Wall clock time and date at job start Mon Mar 30 2020 00:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31517 * 120.00193 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47177 * 89.99899 * 8 6 4 10 10 H 1.48505 * 109.47036 * 210.00183 * 8 6 4 11 11 H 1.48499 * 109.46776 * 329.99672 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.46909 * 180.02562 * 15 13 12 17 17 C 1.46415 * 119.53852 * 89.99974 * 16 15 13 18 18 C 1.53042 * 109.51980 * 144.12049 * 17 16 15 19 19 C 1.50800 * 109.18313 * 46.69369 * 18 17 16 20 20 O 1.21233 * 120.01539 * 145.78889 * 19 18 17 21 21 N 1.34563 * 119.96855 * 325.77006 * 19 18 17 22 22 C 1.34287 * 119.53574 * 269.72451 * 16 15 13 23 23 O 1.21544 * 119.20758 * 5.71436 * 22 16 15 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00055 * 179.97438 * 7 6 4 28 28 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 29 29 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 30 30 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 31 31 H 1.08999 * 109.45962 * 264.13728 * 17 16 15 32 32 H 1.08999 * 109.45852 * 24.10870 * 17 16 15 33 33 H 1.08997 * 109.51956 * 166.61162 * 18 17 16 34 34 H 1.09004 * 109.51683 * 286.78533 * 18 17 16 35 35 H 0.97005 * 119.50464 * 184.41013 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 7 2.6995 0.2132 -4.7088 17 6 3.9203 0.9847 -4.9500 18 6 4.1291 1.1539 -6.4566 19 6 2.8293 1.5787 -7.0924 20 8 2.8365 2.3322 -8.0420 21 7 1.6615 1.1206 -6.6053 22 6 1.6267 0.3524 -5.5044 23 8 0.5973 -0.2272 -5.2187 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9033 -0.5281 4.4375 28 1 2.2491 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5506 -3.8326 31 1 3.8280 1.9656 -4.4836 32 1 4.7733 0.4580 -4.5220 33 1 4.8882 1.9152 -6.6359 34 1 4.4531 0.2067 -6.8880 35 1 0.8338 1.3461 -7.0580 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318437085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:31 Heat of formation + Delta-G solvation = -117.693716 kcal Electronic energy + Delta-G solvation = -20795.232172 eV Core-core repulsion = 17406.739993 eV Total energy + Delta-G solvation = -3388.492179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.71575 -40.68878 -39.83364 -37.39152 -36.71847 -35.68176 -34.38539 -32.66906 -31.72926 -28.54660 -27.20379 -25.98965 -24.31931 -23.06174 -21.35177 -20.19233 -19.41324 -19.11629 -18.69628 -18.00603 -17.47645 -17.33125 -16.54526 -16.16265 -15.85156 -15.66351 -15.49188 -15.42670 -14.92747 -14.64792 -14.14579 -14.14042 -13.77696 -13.49069 -13.27474 -12.91413 -12.79352 -12.50490 -12.15271 -11.85985 -11.64230 -11.37806 -11.37207 -11.26935 -11.05800 -10.86474 -9.89680 -9.83826 -8.37242 -6.42023 0.66070 1.22772 1.27266 1.35150 1.43869 1.78010 1.96237 2.19741 2.26144 2.59222 2.99366 3.41242 3.65380 3.90988 4.04225 4.17586 4.42940 4.44805 4.48213 4.54955 4.61307 4.71904 4.87888 4.95703 4.98016 5.11156 5.32526 5.43038 5.45321 5.67352 6.15506 6.29609 6.43547 6.60511 6.88887 7.04510 7.21639 7.49413 8.77676 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.004205 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.092181 B = 6656.916027 C = 6750.603823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.244 3.756 3 H 0.022 0.978 4 C -0.528 4.528 5 H 0.065 0.935 6 C 0.033 3.967 7 N -0.931 5.931 8 Si 0.934 3.066 9 H -0.265 1.265 10 H -0.292 1.292 11 H -0.266 1.266 12 N -0.698 5.698 13 C 0.483 3.517 14 O -0.593 6.593 15 C 0.117 3.883 16 N -0.594 5.594 17 C 0.103 3.897 18 C -0.143 4.143 19 C 0.522 3.478 20 O -0.541 6.541 21 N -0.674 5.674 22 C 0.711 3.289 23 O -0.595 6.595 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.270 0.730 28 H 0.411 0.589 29 H 0.168 0.832 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -0.501 -19.332 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 H 0.040 0.960 4 C -0.566 4.566 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.762 3.238 9 H -0.191 1.191 10 H -0.219 1.219 11 H -0.191 1.191 12 N -0.348 5.348 13 C 0.269 3.731 14 O -0.474 6.474 15 C -0.009 4.009 16 N -0.329 5.329 17 C -0.018 4.018 18 C -0.182 4.182 19 C 0.313 3.687 20 O -0.416 6.416 21 N -0.342 5.342 22 C 0.412 3.588 23 O -0.473 6.473 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.247 0.753 29 H 0.186 0.814 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 6.281 0.366 -19.422 20.416 hybrid contribution -1.240 0.560 0.547 1.467 sum 5.041 0.927 -18.875 19.559 Atomic orbital electron populations 1.22355 0.98618 1.01499 0.98878 1.18700 0.90600 0.93283 0.83591 0.96014 1.21254 1.32165 1.13616 0.89608 0.91734 1.25470 0.96726 0.99006 0.95550 1.69959 1.46705 1.41773 0.98611 0.86083 0.79817 0.80810 0.77069 1.19120 1.21895 1.19102 1.45961 1.65347 1.14534 1.08986 1.21937 0.77682 0.87582 0.85920 1.90643 1.52627 1.18395 1.85688 1.21555 1.07259 0.90849 0.81217 1.46694 1.13780 1.44441 1.27986 1.22010 0.87031 0.97587 0.95196 1.22372 0.93159 1.08215 0.94463 1.21819 0.86851 0.77706 0.82359 1.90777 1.87912 1.34210 1.28732 1.44273 1.12758 1.49959 1.27205 1.15735 0.83922 0.79186 0.79943 1.90984 1.31202 1.50753 1.74316 0.94328 0.94488 0.91676 0.92087 0.75285 0.81434 0.85790 0.91739 0.83569 0.83216 0.83588 0.73474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.90 8.96 71.98 0.65 -6.26 16 2 C 0.24 11.23 2.15 44.25 0.10 11.33 16 3 H 0.02 1.13 6.64 -2.39 -0.02 1.12 16 4 C -0.53 -27.71 9.31 25.60 0.24 -27.47 16 5 H 0.06 3.53 7.98 -2.91 -0.02 3.51 16 6 C 0.03 1.79 5.45 84.65 0.46 2.25 16 7 N -0.93 -54.58 13.96 21.44 0.30 -54.29 16 8 Si 0.93 44.56 24.37 68.60 1.67 46.23 16 9 H -0.27 -12.10 6.87 99.48 0.68 -11.41 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.27 -12.73 6.53 99.48 0.65 -12.08 16 12 N -0.70 -24.97 5.07 -446.09 -2.26 -27.23 16 13 C 0.48 15.99 7.86 87.66 0.69 16.68 16 14 O -0.59 -25.24 16.09 -3.02 -0.05 -25.29 16 15 C 0.12 2.32 5.82 85.63 0.50 2.82 16 16 N -0.59 -11.92 2.28 -845.65 -1.93 -13.85 16 17 C 0.10 1.21 6.64 86.41 0.57 1.78 16 18 C -0.14 -1.20 6.28 29.89 0.19 -1.01 16 19 C 0.52 9.70 7.76 87.72 0.68 10.38 16 20 O -0.54 -13.60 17.93 -2.88 -0.05 -13.65 16 21 N -0.67 -14.49 5.18 -441.71 -2.29 -16.78 16 22 C 0.71 18.30 8.21 179.36 1.47 19.77 16 23 O -0.60 -20.22 16.66 -3.85 -0.06 -20.29 16 24 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.41 12.11 8.54 -92.71 -0.79 11.32 16 29 H 0.17 1.52 7.82 -2.39 -0.02 1.50 16 30 H 0.12 2.36 7.43 -2.39 -0.02 2.35 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.15 0.56 7.79 -2.39 -0.02 0.54 16 33 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.15 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.42 8.80 8.86 -92.70 -0.82 7.97 16 Total: -1.00 -81.14 297.83 0.33 -80.82 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.54 Total: 14.06 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: 5.54 Total: 30.26 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.18 Total: -112.14 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -0.16 Total: -59.23 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Total: -81.14 0.33 -80.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318437085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.876 kcal (2) G-P(sol) polarization free energy of solvation -81.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds