Wall clock time and date at job start Mon Mar 30 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47563 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46798 * 299.99844 * 3 2 1 6 6 H 1.48505 * 109.47212 * 59.99572 * 3 2 1 7 7 C 1.40026 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00397 * 180.02562 * 7 2 1 9 9 C 1.41316 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.40589 * 119.78402 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14570 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68273 * 0.02562 * 11 10 9 13 13 C 1.39752 * 119.49062 * 359.97438 * 12 11 10 14 14 N 1.38831 * 119.58641 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99574 * 0.27981 * 14 13 12 16 16 C 1.52996 * 109.47059 * 179.72445 * 15 14 13 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 14 18 18 C 1.38676 * 120.41595 * 269.72230 * 17 16 15 19 19 C 1.38636 * 118.41860 * 179.77787 * 18 17 16 20 20 C 1.38223 * 119.15719 * 0.51582 * 19 18 17 21 21 N 1.31849 * 120.76874 * 359.72396 * 20 19 18 22 22 C 1.31886 * 121.72572 * 359.97438 * 21 20 19 23 23 N 1.31982 * 120.83424 * 0.25859 * 13 12 11 24 24 H 0.96995 * 120.00059 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.43012 * 0.02562 * 10 9 7 26 26 H 1.08002 * 120.65487 * 179.97438 * 11 10 9 27 27 H 1.07998 * 120.25753 * 180.02562 * 12 11 10 28 28 H 0.97001 * 119.99981 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.46963 * 299.72241 * 15 14 13 30 30 H 1.08994 * 109.47567 * 59.72393 * 15 14 13 31 31 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 32 32 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 33 33 H 1.07997 * 120.79296 * 0.02562 * 18 17 16 34 34 H 1.07998 * 120.41816 * 180.21562 * 19 18 17 35 35 H 1.08004 * 119.61843 * 179.74675 * 20 19 18 36 36 H 1.08003 * 119.61986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8418 0.0000 12 6 -0.0819 -4.7945 -0.0011 13 6 -0.7280 -3.5553 -0.0010 14 7 -2.1155 -3.5057 -0.0026 15 6 -2.8928 -4.7474 0.0018 16 6 -4.3860 -4.4143 0.0059 17 6 -5.1857 -5.6916 0.0098 18 6 -5.5667 -6.2851 -1.1842 19 6 -6.2976 -7.4620 -1.1323 20 6 -6.6291 -7.9951 0.0992 21 7 -6.2539 -7.4006 1.2146 22 6 -5.5530 -6.2834 1.2032 23 7 -0.0359 -2.4315 -0.0051 24 1 -0.4850 0.8400 -0.0004 25 1 3.0887 -3.6553 0.0010 26 1 1.8224 -5.7890 -0.0004 27 1 -0.6576 -5.7083 -0.0011 28 1 -2.5701 -2.6488 -0.0022 29 1 -2.6527 -5.3295 -0.8880 30 1 -2.6473 -5.3266 0.8920 31 1 -4.6260 -3.8322 0.8957 32 1 -4.6316 -3.8351 -0.8843 33 1 -5.2971 -5.8432 -2.1320 34 1 -6.6082 -7.9534 -2.0425 35 1 -7.2018 -8.9094 0.1483 36 1 -5.2640 -5.8250 2.1375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320365028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:52 Heat of formation + Delta-G solvation = 67.024179 kcal Electronic energy + Delta-G solvation = -18805.623576 eV Core-core repulsion = 15868.283381 eV Total energy + Delta-G solvation = -2937.340195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31854 -38.26901 -35.89133 -33.75176 -32.91697 -32.03834 -30.41166 -29.49536 -27.51100 -25.34015 -23.79977 -23.69708 -21.83143 -21.09417 -20.30834 -17.38550 -17.23135 -16.56044 -16.29778 -15.36646 -14.90591 -14.64304 -14.40190 -14.28330 -13.90865 -13.52220 -13.20364 -13.07622 -12.87032 -12.41695 -12.11289 -11.76154 -11.58318 -11.35741 -11.09055 -10.96583 -10.61289 -10.42297 -9.93801 -9.89413 -9.59171 -9.48902 -9.09691 -8.88571 -7.90486 -7.50836 -6.52038 -6.32473 -4.46711 0.94421 1.12647 2.86951 3.11881 3.16380 3.24319 3.30162 3.63651 3.98815 4.08667 4.35732 4.65040 4.77508 4.83845 4.85543 4.91393 5.17891 5.21944 5.44090 5.57072 5.71478 5.91056 5.95532 6.08167 6.11638 6.16680 6.27721 6.54921 6.58656 6.86427 6.90096 6.94786 7.25554 7.60222 7.81619 7.81969 7.92443 8.17764 8.36532 8.68356 8.80954 9.12539 10.24944 10.40838 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.003490 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.157633 B = 8021.982607 C = 8582.788333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.411 3.589 14 N -0.740 5.740 15 C 0.150 3.850 16 C -0.089 4.089 17 C -0.123 4.123 18 C -0.072 4.072 19 C -0.172 4.172 20 C 0.088 3.912 21 N -0.485 5.485 22 C 0.103 3.897 23 N -0.532 5.532 24 H 0.269 0.731 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.396 0.604 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 -8.272 -1.749 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.393 4.393 13 C 0.171 3.829 14 N -0.377 5.377 15 C 0.024 3.976 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.098 4.098 19 C -0.192 4.192 20 C -0.069 4.069 21 N -0.193 5.193 22 C -0.054 4.054 23 N -0.253 5.253 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.230 0.770 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.534 -7.921 -0.951 14.857 hybrid contribution 0.868 0.477 -0.887 1.330 sum -11.666 -7.444 -1.838 13.960 Atomic orbital electron populations 1.70158 1.07146 1.27190 1.29310 1.26051 0.94861 1.00920 0.93549 0.86325 0.80928 0.81418 0.78415 1.18451 1.19964 1.19954 1.19617 0.94182 0.89370 1.43461 0.89853 1.18211 0.86898 0.91864 0.86536 1.21543 0.98427 0.93471 1.20442 1.20598 0.93439 0.96382 0.95232 1.20604 0.94632 0.95473 1.28604 1.18499 0.84219 0.90277 0.89899 1.44102 1.02815 1.06632 1.84186 1.20961 0.88061 0.87821 1.00800 1.20735 0.94056 0.93815 1.04125 1.20809 0.99288 0.98192 0.94272 1.21576 0.95102 0.94625 0.98462 1.22143 1.00262 0.97142 0.99615 1.22746 0.97176 0.99026 0.87902 1.67695 1.10850 1.09218 1.31552 1.22750 0.93577 0.91337 0.97741 1.68212 1.07701 1.24309 1.25087 0.92030 0.88696 0.88960 0.89292 0.76969 0.93095 0.92961 0.89880 0.90070 0.84703 0.84855 0.82970 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.00 11.46 55.55 0.64 -18.36 16 2 C 0.07 1.82 5.50 -17.35 -0.10 1.73 16 3 Si 0.90 18.73 29.56 -169.99 -5.02 13.70 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.43 -11.82 9.14 -37.74 -0.34 -12.17 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 9 C 0.29 8.20 6.55 -85.00 -0.56 7.64 16 10 C -0.32 -8.08 9.83 -38.65 -0.38 -8.46 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.37 -8.60 9.34 -38.87 -0.36 -8.96 16 13 C 0.41 10.07 7.65 -155.31 -1.19 8.89 16 14 N -0.74 -14.54 5.72 -60.40 -0.35 -14.88 16 15 C 0.15 2.26 4.86 -4.04 -0.02 2.24 16 16 C -0.09 -1.02 5.48 -27.89 -0.15 -1.17 16 17 C -0.12 -1.36 5.15 -104.48 -0.54 -1.90 16 18 C -0.07 -0.71 9.86 -39.27 -0.39 -1.10 16 19 C -0.17 -1.54 10.11 -39.44 -0.40 -1.93 16 20 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 21 N -0.48 -5.92 10.36 -13.25 -0.14 -6.06 16 22 C 0.10 1.19 10.86 -17.55 -0.19 1.00 16 23 N -0.53 -14.75 7.89 -10.33 -0.08 -14.83 16 24 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 25 H 0.09 2.26 8.06 -52.48 -0.42 1.83 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 28 H 0.40 7.63 8.59 -40.82 -0.35 7.28 16 29 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 30 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 31 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -31.23 313.76 -9.88 -41.11 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.45 Total: 9.28 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -5.21 Total: -14.68 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.07 Total: -54.14 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.23 -9.88 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320365028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.135 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds