Wall clock time and date at job start Mon Mar 30 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47563 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46798 * 299.99844 * 3 2 1 6 6 H 1.48505 * 109.47212 * 59.99572 * 3 2 1 7 7 C 1.40026 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00397 * 180.02562 * 7 2 1 9 9 C 1.41316 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.40589 * 119.78402 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14570 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68273 * 0.02562 * 11 10 9 13 13 C 1.39752 * 119.49062 * 359.97438 * 12 11 10 14 14 N 1.38831 * 119.58641 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99574 * 0.27981 * 14 13 12 16 16 C 1.52996 * 109.47059 * 179.72445 * 15 14 13 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 14 18 18 C 1.38676 * 120.41595 * 269.72230 * 17 16 15 19 19 C 1.38636 * 118.41860 * 179.77787 * 18 17 16 20 20 C 1.38223 * 119.15719 * 0.51582 * 19 18 17 21 21 N 1.31849 * 120.76874 * 359.72396 * 20 19 18 22 22 C 1.31886 * 121.72572 * 359.97438 * 21 20 19 23 23 N 1.31982 * 120.83424 * 0.25859 * 13 12 11 24 24 H 0.96995 * 120.00059 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.43012 * 0.02562 * 10 9 7 26 26 H 1.08002 * 120.65487 * 179.97438 * 11 10 9 27 27 H 1.07998 * 120.25753 * 180.02562 * 12 11 10 28 28 H 0.97001 * 119.99981 * 179.97438 * 14 13 12 29 29 H 1.09004 * 109.46963 * 299.72241 * 15 14 13 30 30 H 1.08994 * 109.47567 * 59.72393 * 15 14 13 31 31 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 32 32 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 33 33 H 1.07997 * 120.79296 * 0.02562 * 18 17 16 34 34 H 1.07998 * 120.41816 * 180.21562 * 19 18 17 35 35 H 1.08004 * 119.61843 * 179.74675 * 20 19 18 36 36 H 1.08003 * 119.61986 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8418 0.0000 12 6 -0.0819 -4.7945 -0.0011 13 6 -0.7280 -3.5553 -0.0010 14 7 -2.1155 -3.5057 -0.0026 15 6 -2.8928 -4.7474 0.0018 16 6 -4.3860 -4.4143 0.0059 17 6 -5.1857 -5.6916 0.0098 18 6 -5.5667 -6.2851 -1.1842 19 6 -6.2976 -7.4620 -1.1323 20 6 -6.6291 -7.9951 0.0992 21 7 -6.2539 -7.4006 1.2146 22 6 -5.5530 -6.2834 1.2032 23 7 -0.0359 -2.4315 -0.0051 24 1 -0.4850 0.8400 -0.0004 25 1 3.0887 -3.6553 0.0010 26 1 1.8224 -5.7890 -0.0004 27 1 -0.6576 -5.7083 -0.0011 28 1 -2.5701 -2.6488 -0.0022 29 1 -2.6527 -5.3295 -0.8880 30 1 -2.6473 -5.3266 0.8920 31 1 -4.6260 -3.8322 0.8957 32 1 -4.6316 -3.8351 -0.8843 33 1 -5.2971 -5.8432 -2.1320 34 1 -6.6082 -7.9534 -2.0425 35 1 -7.2018 -8.9094 0.1483 36 1 -5.2640 -5.8250 2.1375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320365028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:52 Heat of formation + Delta-G solvation = 48.891563 kcal Electronic energy + Delta-G solvation = -18806.409866 eV Core-core repulsion = 15868.283381 eV Total energy + Delta-G solvation = -2938.126485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12038 -40.10451 -37.30391 -35.40739 -34.29257 -32.88076 -32.26463 -31.06961 -28.86279 -27.24596 -24.95218 -24.48305 -23.44368 -22.42044 -21.99902 -19.26735 -18.17996 -17.82143 -17.39406 -16.72030 -16.51535 -16.17540 -15.73656 -15.61788 -15.15167 -14.79628 -14.57570 -14.15767 -14.09905 -13.92465 -13.75650 -12.96458 -12.94692 -12.71086 -12.66944 -12.54206 -12.27975 -12.15627 -11.70859 -11.28527 -10.72981 -10.65786 -10.38590 -9.90845 -9.83703 -9.45281 -8.30735 -8.22787 -6.47705 0.16259 0.35281 1.05397 1.33826 1.42739 1.57731 1.57931 2.25973 2.59913 2.89852 2.92792 3.58111 3.87823 3.90967 4.04859 4.05963 4.11321 4.15560 4.36652 4.37528 4.53341 4.66597 4.75408 4.87301 4.96593 4.97352 5.00208 5.04316 5.14684 5.21857 5.38117 5.39273 5.71339 5.80117 5.96129 6.06295 6.23686 6.55008 6.84203 6.95310 7.03621 7.22375 8.34115 8.51605 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.003490 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.157633 B = 8021.982607 C = 8582.788333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.470 4.470 8 H 0.086 0.914 9 C 0.258 3.742 10 C -0.343 4.343 11 C -0.030 4.030 12 C -0.370 4.370 13 C 0.394 3.606 14 N -0.733 5.733 15 C 0.151 3.849 16 C -0.074 4.074 17 C -0.132 4.132 18 C -0.078 4.078 19 C -0.166 4.166 20 C 0.081 3.919 21 N -0.513 5.513 22 C 0.088 3.912 23 N -0.565 5.565 24 H 0.276 0.724 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.114 0.886 28 H 0.396 0.604 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.165 0.835 35 H 0.178 0.822 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.493 -8.852 -2.451 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.502 4.502 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.366 4.366 11 C -0.055 4.055 12 C -0.395 4.395 13 C 0.153 3.847 14 N -0.369 5.369 15 C 0.026 3.974 16 C -0.112 4.112 17 C -0.135 4.135 18 C -0.104 4.104 19 C -0.186 4.186 20 C -0.076 4.076 21 N -0.222 5.222 22 C -0.069 4.069 23 N -0.287 5.287 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.146 0.854 27 H 0.132 0.868 28 H 0.230 0.770 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.385 -8.539 -1.651 15.962 hybrid contribution 1.002 0.487 -0.688 1.310 sum -12.382 -8.052 -2.339 14.954 Atomic orbital electron populations 1.70241 1.08730 1.28654 1.29622 1.26955 0.95777 1.04329 0.92551 0.85103 0.79370 0.76123 0.78712 1.17979 1.19111 1.19167 1.19963 0.94598 0.90480 1.45158 0.89597 1.18693 0.87704 0.93194 0.87291 1.21700 0.99008 0.93768 1.22164 1.21001 0.93721 0.97189 0.93545 1.20933 0.95010 0.96055 1.27539 1.18958 0.86042 0.90218 0.89434 1.44272 1.01392 1.08298 1.82944 1.21124 0.89813 0.85929 1.00500 1.20567 0.91416 0.94440 1.04819 1.20727 0.99949 0.98073 0.94726 1.21877 0.94887 0.94978 0.98646 1.22481 0.99060 0.96544 1.00488 1.23274 0.96867 0.99684 0.87784 1.67703 1.11744 1.09769 1.32980 1.22882 0.94069 0.91644 0.98270 1.68197 1.07978 1.26011 1.26554 0.91296 0.87942 0.85436 0.86794 0.76986 0.93033 0.93325 0.89429 0.89213 0.83182 0.81788 0.80468 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.56 11.46 21.84 0.25 -40.31 16 2 C 0.03 1.33 5.50 85.29 0.47 1.80 16 3 Si 0.99 38.69 29.56 68.60 2.03 40.71 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 7 C -0.47 -26.31 9.14 23.46 0.21 -26.10 16 8 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.26 14.92 6.55 40.19 0.26 15.18 16 10 C -0.34 -17.84 9.83 22.87 0.22 -17.62 16 11 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 12 C -0.37 -17.00 9.34 22.73 0.21 -16.78 16 13 C 0.39 19.45 7.65 133.40 1.02 20.47 16 14 N -0.73 -28.67 5.72 -345.01 -1.97 -30.64 16 15 C 0.15 4.40 4.86 86.38 0.42 4.83 16 16 C -0.07 -1.61 5.48 29.85 0.16 -1.45 16 17 C -0.13 -2.73 5.15 -19.77 -0.10 -2.83 16 18 C -0.08 -1.37 9.86 22.47 0.22 -1.15 16 19 C -0.17 -2.50 10.11 22.36 0.23 -2.27 16 20 C 0.08 1.42 11.18 84.69 0.95 2.37 16 21 N -0.51 -11.95 10.36 -195.84 -2.03 -13.98 16 22 C 0.09 1.96 10.86 84.67 0.92 2.88 16 23 N -0.56 -32.10 7.89 -186.59 -1.47 -33.57 16 24 H 0.28 13.41 8.29 -92.71 -0.77 12.64 16 25 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 26 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 27 H 0.11 4.57 6.68 -2.91 -0.02 4.55 16 28 H 0.40 15.33 8.59 -92.71 -0.80 14.53 16 29 H 0.05 1.52 7.92 -2.38 -0.02 1.50 16 30 H 0.05 1.47 7.91 -2.39 -0.02 1.45 16 31 H 0.09 1.82 8.10 -2.38 -0.02 1.80 16 32 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -68.61 313.76 2.53 -66.08 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.30 Total: 33.54 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 5.43 Total: -21.85 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -5.22 Total: -118.49 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.71 kcal Total: -68.61 2.53 -66.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320365028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.975 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds