Wall clock time and date at job start Mon Mar 30 2020 00:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00124 * 2 1 4 4 C 1.50699 * 109.47164 * 180.02562 * 3 2 1 5 5 N 1.30942 * 126.45076 * 90.33908 * 4 3 2 6 6 C 1.35214 * 105.58276 * 180.10671 * 5 4 3 7 7 C 1.48451 * 126.40655 * 179.84630 * 6 5 4 8 8 O 1.21481 * 119.99943 * 5.94048 * 7 6 5 9 9 N 1.34784 * 119.99786 * 185.94455 * 7 6 5 10 10 C 1.46496 * 120.00191 * 5.32607 * 9 7 6 11 11 C 1.46498 * 119.99558 * 185.32174 * 9 7 6 12 12 H 1.08996 * 109.47635 * 359.97438 * 11 9 7 13 13 C 1.53007 * 109.46944 * 239.99905 * 11 9 7 14 14 C 1.50699 * 109.46796 * 120.00258 * 11 9 7 15 15 H 1.07995 * 120.00354 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99814 * 179.97438 * 14 11 9 17 17 N 1.31513 * 120.00097 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99850 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.46898 * 90.00251 * 18 16 14 20 20 H 1.48499 * 109.46876 * 209.99738 * 18 16 14 21 21 H 1.48498 * 109.47287 * 330.00210 * 18 16 14 22 22 N 1.30669 * 107.18715 * 359.57967 * 6 5 4 23 23 O 1.21282 * 110.11010 * 0.26822 * 22 6 5 24 24 H 1.09004 * 109.46941 * 299.99519 * 1 2 3 25 25 H 1.08994 * 109.46970 * 60.00135 * 1 2 3 26 26 H 1.08999 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47191 * 59.99857 * 3 2 1 28 28 H 1.09000 * 109.46988 * 300.00139 * 3 2 1 29 29 H 1.09001 * 109.47061 * 275.28383 * 10 9 7 30 30 H 1.08999 * 109.47277 * 155.28619 * 10 9 7 31 31 H 1.08996 * 109.47183 * 35.28128 * 10 9 7 32 32 H 1.08997 * 109.46963 * 60.00617 * 13 11 9 33 33 H 1.08998 * 109.46745 * 180.02562 * 13 11 9 34 34 H 1.09002 * 109.47199 * 300.00079 * 13 11 9 35 35 H 0.97005 * 119.99816 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2881 1.1313 -1.0542 6 6 5.5474 1.0262 -0.5731 7 6 6.7921 0.9283 -1.3762 8 8 6.7464 1.0469 -2.5843 9 7 7.9729 0.7077 -0.7649 10 6 8.0144 0.4485 0.6764 11 6 9.2147 0.7270 -1.5418 12 1 8.9861 0.9334 -2.5873 13 6 9.9071 -0.6329 -1.4305 14 6 10.1263 1.8003 -1.0050 15 1 9.8120 2.4075 -0.1691 16 6 11.3618 2.0070 -1.5811 17 7 11.7445 1.2679 -2.5994 18 14 12.4916 3.3378 -0.9162 19 1 13.3584 2.7663 0.1453 20 1 13.3384 3.8637 -2.0170 21 1 11.6760 4.4414 -0.3485 22 7 5.4644 1.0327 0.7309 23 8 4.3048 1.1239 1.0745 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 8.0260 1.3956 1.2157 30 1 8.9138 -0.1181 0.9179 31 1 7.1345 -0.1249 0.9680 32 1 9.2478 -1.4091 -1.8188 33 1 10.8313 -0.6183 -2.0082 34 1 10.1358 -0.8397 -0.3850 35 1 12.6139 1.4131 -3.0045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320409297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:58 Heat of formation + Delta-G solvation = 12.287455 kcal Electronic energy + Delta-G solvation = -20541.741987 eV Core-core repulsion = 17158.886215 eV Total energy + Delta-G solvation = -3382.855772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.67332 -39.14517 -38.42685 -35.87371 -35.32626 -33.44815 -32.53582 -29.62533 -28.61065 -26.40914 -26.24492 -25.40508 -25.11664 -22.98964 -21.34839 -19.17070 -18.40375 -17.46165 -16.85918 -16.73221 -16.49384 -16.24668 -15.62373 -15.41252 -14.56194 -14.39287 -13.66327 -13.31960 -13.01459 -12.73673 -12.57893 -12.43241 -12.07128 -11.64604 -11.59096 -11.49709 -11.13556 -11.01499 -10.83686 -10.74815 -10.33530 -10.28193 -10.21337 -10.13119 -9.53713 -9.22726 -8.48418 -7.76345 -6.11824 -4.20483 0.85372 1.70147 2.46112 3.03438 3.25325 3.32263 3.35734 3.50210 3.66256 3.91529 4.22918 4.38606 4.56172 4.81906 4.89975 4.97915 4.99311 5.19680 5.27621 5.41664 5.77024 5.86305 6.09977 6.35356 6.49154 6.71600 6.76573 6.97072 7.27216 7.37365 7.64845 7.90682 8.00971 8.08243 8.33353 8.64906 8.85960 9.45870 10.93668 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041304 B = 0.003985 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.733014 B = 7024.043401 C = 7180.494721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.162 3.838 4 C 0.166 3.834 5 N -0.419 5.419 6 C 0.149 3.851 7 C 0.590 3.410 8 O -0.514 6.514 9 N -0.568 5.568 10 C 0.085 3.915 11 C 0.259 3.741 12 H 0.067 0.933 13 C -0.148 4.148 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.274 1.274 22 N -0.338 5.338 23 O 0.096 5.904 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.014 0.986 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.183 -1.211 8.770 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.083 3.917 4 C -0.055 4.055 5 N -0.154 5.154 6 C -0.126 4.126 7 C 0.371 3.629 8 O -0.387 6.387 9 N -0.300 5.300 10 C -0.058 4.058 11 C 0.160 3.840 12 H 0.085 0.915 13 C -0.207 4.207 14 C -0.568 4.568 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.199 1.199 22 N -0.043 5.043 23 O 0.029 5.971 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.116 0.884 34 H 0.052 0.948 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.049 -1.409 8.004 19.794 hybrid contribution 0.283 0.922 0.570 1.121 sum -17.766 -0.487 8.574 19.733 Atomic orbital electron populations 1.22849 0.79094 1.03714 1.00652 1.87966 1.20981 1.25544 1.95642 1.20562 0.79999 0.86788 1.04330 1.28267 0.97687 0.98857 0.80733 1.72011 0.99638 1.15706 1.28006 1.26179 0.95511 1.03247 0.87632 1.16482 0.80517 0.79896 0.86049 1.90786 1.84729 1.50776 1.12438 1.48209 1.06558 1.65699 1.09522 1.21781 1.02125 1.01081 0.80851 1.19144 0.77539 0.94334 0.92955 0.91500 1.22118 1.02452 0.95786 1.00299 1.21290 1.00706 1.17551 1.17244 0.92064 1.24889 0.97693 0.96355 0.94732 1.69877 1.20970 1.39158 1.22414 0.86435 0.80392 0.81720 0.78520 1.20508 1.21013 1.19891 1.75206 0.96764 1.17004 1.15364 1.85302 1.11995 1.63925 1.35909 0.93300 0.93221 0.88831 0.88990 0.88132 0.92704 0.90102 0.92199 0.96656 0.88392 0.94832 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.63 10.69 -35.23 -0.38 -4.00 16 3 C 0.16 1.31 6.56 36.01 0.24 1.55 16 4 C 0.17 2.22 8.13 -13.00 -0.11 2.12 16 5 N -0.42 -7.52 11.57 -9.94 -0.12 -7.63 16 6 C 0.15 2.94 7.63 -156.18 -1.19 1.74 16 7 C 0.59 13.81 7.70 -12.05 -0.09 13.72 16 8 O -0.51 -13.68 16.44 5.38 0.09 -13.59 16 9 N -0.57 -13.11 2.75 -176.15 -0.48 -13.60 16 10 C 0.09 1.62 8.53 59.84 0.51 2.13 16 11 C 0.26 6.78 2.62 -69.08 -0.18 6.60 16 12 H 0.07 1.99 6.91 -51.93 -0.36 1.63 16 13 C -0.15 -3.59 8.96 37.16 0.33 -3.26 16 14 C -0.53 -14.49 8.37 -34.44 -0.29 -14.78 16 15 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 17 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.34 -5.77 8.99 30.92 0.28 -5.49 16 23 O 0.10 1.34 11.29 17.98 0.20 1.55 16 24 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.49 6.44 -51.93 -0.33 1.16 16 31 H 0.06 1.04 5.96 -51.93 -0.31 0.73 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 34 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -33.34 303.71 -4.15 -37.48 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -4.16 Total: -3.82 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 0.24 Total: 12.82 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.31 Total: -51.13 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.08 Total: -16.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.34 -4.15 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320409297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.772 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds