Wall clock time and date at job start Mon Mar 30 2020 00:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00124 * 2 1 4 4 C 1.50699 * 109.47164 * 180.02562 * 3 2 1 5 5 N 1.30942 * 126.45076 * 90.33908 * 4 3 2 6 6 C 1.35214 * 105.58276 * 180.10671 * 5 4 3 7 7 C 1.48451 * 126.40655 * 179.84630 * 6 5 4 8 8 O 1.21481 * 119.99943 * 5.94048 * 7 6 5 9 9 N 1.34784 * 119.99786 * 185.94455 * 7 6 5 10 10 C 1.46496 * 120.00191 * 5.32607 * 9 7 6 11 11 C 1.46498 * 119.99558 * 185.32174 * 9 7 6 12 12 H 1.08996 * 109.47635 * 359.97438 * 11 9 7 13 13 C 1.53007 * 109.46944 * 239.99905 * 11 9 7 14 14 C 1.50699 * 109.46796 * 120.00258 * 11 9 7 15 15 H 1.07995 * 120.00354 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99814 * 179.97438 * 14 11 9 17 17 N 1.31513 * 120.00097 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99850 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.46898 * 90.00251 * 18 16 14 20 20 H 1.48499 * 109.46876 * 209.99738 * 18 16 14 21 21 H 1.48498 * 109.47287 * 330.00210 * 18 16 14 22 22 N 1.30669 * 107.18715 * 359.57967 * 6 5 4 23 23 O 1.21282 * 110.11010 * 0.26822 * 22 6 5 24 24 H 1.09004 * 109.46941 * 299.99519 * 1 2 3 25 25 H 1.08994 * 109.46970 * 60.00135 * 1 2 3 26 26 H 1.08999 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47191 * 59.99857 * 3 2 1 28 28 H 1.09000 * 109.46988 * 300.00139 * 3 2 1 29 29 H 1.09001 * 109.47061 * 275.28383 * 10 9 7 30 30 H 1.08999 * 109.47277 * 155.28619 * 10 9 7 31 31 H 1.08996 * 109.47183 * 35.28128 * 10 9 7 32 32 H 1.08997 * 109.46963 * 60.00617 * 13 11 9 33 33 H 1.08998 * 109.46745 * 180.02562 * 13 11 9 34 34 H 1.09002 * 109.47199 * 300.00079 * 13 11 9 35 35 H 0.97005 * 119.99816 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2881 1.1313 -1.0542 6 6 5.5474 1.0262 -0.5731 7 6 6.7921 0.9283 -1.3762 8 8 6.7464 1.0469 -2.5843 9 7 7.9729 0.7077 -0.7649 10 6 8.0144 0.4485 0.6764 11 6 9.2147 0.7270 -1.5418 12 1 8.9861 0.9334 -2.5873 13 6 9.9071 -0.6329 -1.4305 14 6 10.1263 1.8003 -1.0050 15 1 9.8120 2.4075 -0.1691 16 6 11.3618 2.0070 -1.5811 17 7 11.7445 1.2679 -2.5994 18 14 12.4916 3.3378 -0.9162 19 1 13.3584 2.7663 0.1453 20 1 13.3384 3.8637 -2.0170 21 1 11.6760 4.4414 -0.3485 22 7 5.4644 1.0327 0.7309 23 8 4.3048 1.1239 1.0745 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 8.0260 1.3956 1.2157 30 1 8.9138 -0.1181 0.9179 31 1 7.1345 -0.1249 0.9680 32 1 9.2478 -1.4091 -1.8188 33 1 10.8313 -0.6183 -2.0082 34 1 10.1358 -0.8397 -0.3850 35 1 12.6139 1.4131 -3.0045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320409297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:57 Heat of formation + Delta-G solvation = -13.711395 kcal Electronic energy + Delta-G solvation = -20542.869382 eV Core-core repulsion = 17158.886215 eV Total energy + Delta-G solvation = -3383.983167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.99111 -40.97111 -39.02630 -37.55069 -36.89994 -35.16109 -34.07809 -31.50556 -29.42809 -28.05019 -27.39103 -26.85007 -26.74059 -24.28750 -23.02687 -20.82490 -19.65986 -18.91876 -18.60065 -18.19132 -17.36918 -17.33120 -17.00089 -16.49943 -16.37548 -16.29791 -15.04686 -14.70171 -14.43958 -14.26724 -13.91268 -13.59359 -13.27277 -13.13752 -13.06091 -12.96961 -12.81429 -12.71174 -12.42807 -12.32662 -12.24448 -12.18363 -11.46570 -11.37642 -11.26340 -10.77264 -10.58440 -9.64518 -8.20525 -6.38013 -0.39714 0.35328 1.39641 1.41463 1.44029 1.50372 1.55437 1.85170 2.38038 2.54275 2.68652 3.07952 3.13299 3.57084 3.98288 4.20058 4.25196 4.38045 4.52627 4.58543 4.62316 4.66528 4.69648 4.80874 4.91400 4.93505 4.98103 5.31363 5.40925 5.56100 5.89368 6.01812 6.03083 6.39279 6.62830 6.74792 6.93415 7.33074 8.84670 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041304 B = 0.003985 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.733014 B = 7024.043401 C = 7180.494721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.160 3.840 4 C 0.192 3.808 5 N -0.457 5.457 6 C 0.122 3.878 7 C 0.583 3.417 8 O -0.562 6.562 9 N -0.574 5.574 10 C 0.088 3.912 11 C 0.263 3.737 12 H 0.018 0.982 13 C -0.135 4.135 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.272 1.272 22 N -0.332 5.332 23 O 0.123 5.877 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.139 0.861 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.756 -0.575 11.221 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.082 3.918 4 C -0.029 4.029 5 N -0.191 5.191 6 C -0.151 4.151 7 C 0.367 3.633 8 O -0.439 6.439 9 N -0.304 5.304 10 C -0.054 4.054 11 C 0.162 3.838 12 H 0.036 0.964 13 C -0.193 4.193 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.197 1.197 22 N -0.034 5.034 23 O 0.050 5.950 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.156 0.844 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.615 -0.791 10.473 22.250 hybrid contribution 0.582 0.708 -0.148 0.929 sum -19.033 -0.082 10.324 21.653 Atomic orbital electron populations 1.23075 0.76831 1.04564 1.02320 1.87907 1.23353 1.26167 1.96022 1.21067 0.76193 0.87054 1.07444 1.29296 0.99257 0.95318 0.79029 1.71972 0.99416 1.17676 1.30000 1.25378 0.94839 1.06655 0.88249 1.16872 0.81703 0.78844 0.85914 1.90738 1.85803 1.52766 1.14605 1.48184 1.05757 1.65523 1.10945 1.21927 1.03341 1.01770 0.78335 1.18815 0.78789 0.95217 0.90943 0.96415 1.21923 1.01307 0.94987 1.01090 1.21491 1.01269 1.18154 1.17467 0.92116 1.25733 0.99103 0.98427 0.94834 1.70008 1.21448 1.40444 1.23319 0.85380 0.78308 0.78798 0.78085 1.19026 1.20827 1.19709 1.75147 0.98317 1.16037 1.13941 1.85281 1.11168 1.62806 1.35765 0.90953 0.92194 0.88523 0.84375 0.86424 0.92096 0.89446 0.90329 0.95922 0.90485 0.92953 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.64 10.69 -148.98 -1.59 -8.23 16 3 C 0.16 2.02 6.56 71.24 0.47 2.49 16 4 C 0.19 4.69 8.13 88.36 0.72 5.41 16 5 N -0.46 -16.16 11.57 -302.80 -3.50 -19.66 16 6 C 0.12 4.81 7.63 137.33 1.05 5.85 16 7 C 0.58 28.31 7.70 86.97 0.67 28.97 16 8 O -0.56 -31.67 16.44 -3.65 -0.06 -31.73 16 9 N -0.57 -27.02 2.75 -829.52 -2.28 -29.31 16 10 C 0.09 3.29 8.53 127.77 1.09 4.38 16 11 C 0.26 14.23 2.62 44.25 0.12 14.34 16 12 H 0.02 1.13 6.91 -2.39 -0.02 1.12 16 13 C -0.13 -6.65 8.96 71.98 0.64 -6.00 16 14 C -0.55 -30.30 8.37 25.60 0.21 -30.09 16 15 H 0.06 3.30 7.65 -2.91 -0.02 3.28 16 16 C 0.02 1.06 5.30 84.66 0.45 1.51 16 17 N -0.91 -52.63 11.32 21.45 0.24 -52.38 16 18 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 N -0.33 -10.88 8.99 -59.38 -0.53 -11.41 16 23 O 0.12 3.14 11.29 74.40 0.84 3.98 16 24 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 25 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 3.11 6.44 -2.39 -0.02 3.10 16 31 H 0.08 2.62 5.96 -2.39 -0.01 2.61 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 4.15 6.07 -2.39 -0.01 4.13 16 34 H 0.05 2.33 6.67 -2.39 -0.02 2.31 16 35 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -75.48 303.71 2.92 -72.56 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.12 Total: 2.60 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: 6.67 Total: 28.31 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -6.08 Total: -112.76 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.81 Total: -35.98 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -75.48 2.92 -72.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320409297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.853 kcal (2) G-P(sol) polarization free energy of solvation -75.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds