Wall clock time and date at job start Mon Mar 30 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99494 * 2 1 4 4 C 1.50700 * 109.46781 * 179.97438 * 3 2 1 5 5 N 1.30952 * 126.44539 * 90.33531 * 4 3 2 6 6 C 1.35221 * 105.57533 * 180.10625 * 5 4 3 7 7 C 1.48449 * 126.40014 * 179.84830 * 6 5 4 8 8 O 1.21476 * 120.00506 * 5.64922 * 7 6 5 9 9 N 1.34784 * 119.99690 * 185.65467 * 7 6 5 10 10 C 1.46501 * 119.99915 * 355.94873 * 9 7 6 11 11 C 1.46504 * 120.00045 * 175.95027 * 9 7 6 12 12 H 1.09004 * 109.46774 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.46834 * 119.99820 * 11 9 7 14 14 C 1.50698 * 109.47300 * 240.00169 * 11 9 7 15 15 H 1.08003 * 119.99821 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99786 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00302 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99678 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46915 * 89.99800 * 18 16 14 20 20 H 1.48502 * 109.47193 * 210.00100 * 18 16 14 21 21 H 1.48498 * 109.47080 * 330.00118 * 18 16 14 22 22 N 1.30664 * 107.18953 * 359.58473 * 6 5 4 23 23 O 1.21289 * 110.11280 * 0.26553 * 22 6 5 24 24 H 1.09000 * 109.47579 * 300.00136 * 1 2 3 25 25 H 1.09004 * 109.47817 * 60.00638 * 1 2 3 26 26 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47476 * 59.99816 * 3 2 1 28 28 H 1.08997 * 109.46769 * 299.99617 * 3 2 1 29 29 H 1.08990 * 109.47051 * 275.65086 * 10 9 7 30 30 H 1.09003 * 109.46811 * 35.65149 * 10 9 7 31 31 H 1.09004 * 109.46843 * 155.64652 * 10 9 7 32 32 H 1.09007 * 109.46796 * 180.02562 * 13 11 9 33 33 H 1.08994 * 109.47254 * 60.00343 * 13 11 9 34 34 H 1.09001 * 109.47245 * 299.99887 * 13 11 9 35 35 H 0.96993 * 119.99941 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2888 1.1312 -1.0524 6 6 5.5477 1.0263 -0.5702 7 6 6.7930 0.9281 -1.3723 8 8 6.7475 1.0410 -2.5810 9 7 7.9742 0.7137 -0.7595 10 6 8.0425 0.6660 0.7032 11 6 9.1897 0.5283 -1.5560 12 1 8.9434 0.5956 -2.6157 13 6 10.2049 1.6154 -1.1977 14 6 9.7804 -0.8269 -1.2632 15 1 9.2987 -1.4841 -0.5544 16 6 10.9362 -1.2271 -1.8996 17 7 11.5229 -0.4266 -2.7623 18 14 11.6687 -2.9066 -1.5361 19 1 11.1006 -3.9079 -2.4742 20 1 13.1430 -2.8507 -1.7049 21 1 11.3447 -3.2964 -0.1403 22 7 5.4636 1.0333 0.7337 23 8 4.3037 1.1246 1.0764 24 1 -0.3634 0.5138 0.8899 25 1 -0.3635 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6884 1.8464 -0.8900 29 1 8.1299 1.6789 1.0960 30 1 7.1372 0.2014 1.0942 31 1 8.9111 0.0819 1.0074 32 1 11.1091 1.4777 -1.7907 33 1 10.4511 1.5476 -0.1381 34 1 9.7776 2.5956 -1.4096 35 1 12.3362 -0.7081 -3.2097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320409298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:59 Heat of formation + Delta-G solvation = 13.396675 kcal Electronic energy + Delta-G solvation = -20553.544226 eV Core-core repulsion = 17170.736553 eV Total energy + Delta-G solvation = -3382.807673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.66861 -39.14362 -38.41790 -35.86801 -35.32237 -33.46989 -32.52712 -29.62827 -28.60661 -26.39861 -26.23262 -25.38164 -25.13000 -22.98476 -21.35752 -19.19519 -18.39844 -17.44581 -16.90081 -16.72304 -16.48954 -16.24707 -15.62815 -15.40066 -14.55160 -14.37432 -13.67179 -13.32581 -13.01091 -12.71798 -12.62252 -12.34735 -12.06040 -11.67990 -11.56842 -11.49122 -11.12449 -10.92287 -10.86338 -10.74433 -10.31654 -10.27142 -10.21443 -10.14704 -9.53053 -9.23707 -8.47741 -7.76479 -6.11864 -4.20532 0.84693 1.70194 2.46510 3.01700 3.26576 3.33031 3.35611 3.54532 3.64182 3.90952 4.23088 4.38747 4.55949 4.82128 4.90623 4.98281 4.98768 5.19814 5.29049 5.41391 5.77880 5.94765 6.06261 6.43885 6.50312 6.70546 6.77607 6.97984 7.26322 7.39611 7.64710 7.89930 8.01221 8.09006 8.33118 8.65172 8.85879 9.45773 10.93702 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.004161 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.786874 B = 6727.278726 C = 6958.485303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.161 3.839 4 C 0.168 3.832 5 N -0.419 5.419 6 C 0.151 3.849 7 C 0.589 3.411 8 O -0.514 6.514 9 N -0.567 5.567 10 C 0.074 3.926 11 C 0.259 3.741 12 H 0.067 0.933 13 C -0.146 4.146 14 C -0.530 4.530 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.338 5.338 23 O 0.093 5.907 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.013 0.987 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.456 4.336 9.338 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.083 3.917 4 C -0.054 4.054 5 N -0.154 5.154 6 C -0.124 4.124 7 C 0.370 3.630 8 O -0.387 6.387 9 N -0.299 5.299 10 C -0.069 4.069 11 C 0.160 3.840 12 H 0.085 0.915 13 C -0.205 4.205 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 N -0.046 5.046 23 O 0.027 5.973 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.323 4.172 8.584 19.778 hybrid contribution 0.063 -0.732 0.385 0.829 sum -17.260 3.440 8.969 19.753 Atomic orbital electron populations 1.22850 0.79096 1.03743 1.00620 1.87980 1.20981 1.25491 1.95632 1.20566 0.80012 0.86833 1.04285 1.28273 0.97693 0.98724 0.80730 1.72023 0.99607 1.15731 1.28002 1.26203 0.95563 1.03005 0.87590 1.16512 0.80575 0.79891 0.86067 1.90785 1.84826 1.50640 1.12490 1.48219 1.07688 1.66191 1.07765 1.21980 1.03564 1.01285 0.80115 1.19142 0.77824 0.94731 0.92301 0.91520 1.22093 1.02457 0.95418 1.00511 1.21288 1.09372 1.00295 1.25944 0.92034 1.24883 0.96477 0.97614 0.94652 1.69873 1.19569 1.35989 1.26949 0.86438 0.78150 0.83739 0.78754 1.20500 1.21021 1.19839 1.75197 0.96674 1.17356 1.15331 1.85306 1.12096 1.63902 1.35973 0.93312 0.93226 0.88815 0.89017 0.88138 0.93404 0.90981 0.89464 0.88449 0.94867 0.96769 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.73 10.69 -35.23 -0.38 -4.10 16 3 C 0.16 1.32 6.56 36.01 0.24 1.55 16 4 C 0.17 2.24 8.13 -13.00 -0.11 2.14 16 5 N -0.42 -7.53 11.57 -9.93 -0.11 -7.65 16 6 C 0.15 2.97 7.71 -156.18 -1.20 1.77 16 7 C 0.59 13.80 7.70 -12.05 -0.09 13.70 16 8 O -0.51 -13.69 16.44 5.39 0.09 -13.61 16 9 N -0.57 -13.10 2.75 -176.15 -0.48 -13.58 16 10 C 0.07 1.41 8.62 59.85 0.52 1.93 16 11 C 0.26 6.78 2.63 -69.08 -0.18 6.60 16 12 H 0.07 1.99 6.91 -51.93 -0.36 1.63 16 13 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 14 C -0.53 -14.53 7.95 -34.44 -0.27 -14.80 16 15 H 0.06 1.67 7.43 -52.48 -0.39 1.28 16 16 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 17 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 N -0.34 -5.75 8.70 30.92 0.27 -5.48 16 23 O 0.09 1.30 11.29 17.99 0.20 1.50 16 24 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.30 5.30 -51.93 -0.28 1.02 16 31 H 0.09 1.69 7.11 -51.93 -0.37 1.32 16 32 H 0.10 2.56 6.07 -51.92 -0.32 2.24 16 33 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -33.37 303.99 -4.18 -37.55 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.20 Total: -3.62 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 0.24 Total: 12.69 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.30 Total: -51.13 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.08 Total: -16.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.37 -4.18 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320409298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.949 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds