Wall clock time and date at job start Mon Mar 30 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99494 * 2 1 4 4 C 1.50700 * 109.46781 * 179.97438 * 3 2 1 5 5 N 1.30952 * 126.44539 * 90.33531 * 4 3 2 6 6 C 1.35221 * 105.57533 * 180.10625 * 5 4 3 7 7 C 1.48449 * 126.40014 * 179.84830 * 6 5 4 8 8 O 1.21476 * 120.00506 * 5.64922 * 7 6 5 9 9 N 1.34784 * 119.99690 * 185.65467 * 7 6 5 10 10 C 1.46501 * 119.99915 * 355.94873 * 9 7 6 11 11 C 1.46504 * 120.00045 * 175.95027 * 9 7 6 12 12 H 1.09004 * 109.46774 * 359.97438 * 11 9 7 13 13 C 1.52997 * 109.46834 * 119.99820 * 11 9 7 14 14 C 1.50698 * 109.47300 * 240.00169 * 11 9 7 15 15 H 1.08003 * 119.99821 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99786 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00302 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99678 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46915 * 89.99800 * 18 16 14 20 20 H 1.48502 * 109.47193 * 210.00100 * 18 16 14 21 21 H 1.48498 * 109.47080 * 330.00118 * 18 16 14 22 22 N 1.30664 * 107.18953 * 359.58473 * 6 5 4 23 23 O 1.21289 * 110.11280 * 0.26553 * 22 6 5 24 24 H 1.09000 * 109.47579 * 300.00136 * 1 2 3 25 25 H 1.09004 * 109.47817 * 60.00638 * 1 2 3 26 26 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47476 * 59.99816 * 3 2 1 28 28 H 1.08997 * 109.46769 * 299.99617 * 3 2 1 29 29 H 1.08990 * 109.47051 * 275.65086 * 10 9 7 30 30 H 1.09003 * 109.46811 * 35.65149 * 10 9 7 31 31 H 1.09004 * 109.46843 * 155.64652 * 10 9 7 32 32 H 1.09007 * 109.46796 * 180.02562 * 13 11 9 33 33 H 1.08994 * 109.47254 * 60.00343 * 13 11 9 34 34 H 1.09001 * 109.47245 * 299.99887 * 13 11 9 35 35 H 0.96993 * 119.99941 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2888 1.1312 -1.0524 6 6 5.5477 1.0263 -0.5702 7 6 6.7930 0.9281 -1.3723 8 8 6.7475 1.0410 -2.5810 9 7 7.9742 0.7137 -0.7595 10 6 8.0425 0.6660 0.7032 11 6 9.1897 0.5283 -1.5560 12 1 8.9434 0.5956 -2.6157 13 6 10.2049 1.6154 -1.1977 14 6 9.7804 -0.8269 -1.2632 15 1 9.2987 -1.4841 -0.5544 16 6 10.9362 -1.2271 -1.8996 17 7 11.5229 -0.4266 -2.7623 18 14 11.6687 -2.9066 -1.5361 19 1 11.1006 -3.9079 -2.4742 20 1 13.1430 -2.8507 -1.7049 21 1 11.3447 -3.2964 -0.1403 22 7 5.4636 1.0333 0.7337 23 8 4.3037 1.1246 1.0764 24 1 -0.3634 0.5138 0.8899 25 1 -0.3635 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6884 1.8464 -0.8900 29 1 8.1299 1.6789 1.0960 30 1 7.1372 0.2014 1.0942 31 1 8.9111 0.0819 1.0074 32 1 11.1091 1.4777 -1.7907 33 1 10.4511 1.5476 -0.1381 34 1 9.7776 2.5956 -1.4096 35 1 12.3362 -0.7081 -3.2097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320409298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:59 Heat of formation + Delta-G solvation = -12.605888 kcal Electronic energy + Delta-G solvation = -20554.671782 eV Core-core repulsion = 17170.736553 eV Total energy + Delta-G solvation = -3383.935228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.98359 -40.96819 -39.02879 -37.54373 -36.89679 -35.17683 -34.07837 -31.50391 -29.43381 -28.02825 -27.39024 -26.85444 -26.73380 -24.28040 -23.03784 -20.84929 -19.64650 -18.90196 -18.64558 -18.18320 -17.39242 -17.32459 -17.00164 -16.50409 -16.35757 -16.28344 -15.03682 -14.71532 -14.46205 -14.18437 -13.94297 -13.61681 -13.27930 -13.12611 -13.06306 -12.88832 -12.82508 -12.77688 -12.41023 -12.29715 -12.22178 -12.14636 -11.48389 -11.35926 -11.28085 -10.77362 -10.58876 -9.64048 -8.20924 -6.38293 -0.40188 0.35636 1.39157 1.41119 1.44092 1.49450 1.54678 1.88199 2.37689 2.53537 2.69480 3.07788 3.13101 3.55616 3.98467 4.20602 4.31424 4.38197 4.55072 4.57870 4.62573 4.66601 4.68768 4.82277 4.92656 4.97322 4.97748 5.33634 5.39109 5.56061 5.89005 6.02099 6.03724 6.39140 6.62734 6.74744 6.94052 7.32646 8.84371 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.004161 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.786874 B = 6727.278726 C = 6958.485303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.160 3.840 4 C 0.193 3.807 5 N -0.457 5.457 6 C 0.123 3.877 7 C 0.582 3.418 8 O -0.562 6.562 9 N -0.572 5.572 10 C 0.077 3.923 11 C 0.263 3.737 12 H 0.018 0.982 13 C -0.132 4.132 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.020 3.980 17 N -0.914 5.914 18 Si 0.969 3.031 19 H -0.281 1.281 20 H -0.276 1.276 21 H -0.262 1.262 22 N -0.332 5.332 23 O 0.121 5.879 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.022 0.978 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.191 4.154 11.727 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.028 4.028 5 N -0.191 5.191 6 C -0.149 4.149 7 C 0.366 3.634 8 O -0.440 6.440 9 N -0.303 5.303 10 C -0.065 4.065 11 C 0.162 3.838 12 H 0.035 0.965 13 C -0.191 4.191 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.793 3.207 19 H -0.207 1.207 20 H -0.201 1.201 21 H -0.186 1.186 22 N -0.035 5.035 23 O 0.049 5.951 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.157 0.843 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.048 3.995 10.994 22.353 hybrid contribution 0.418 -0.642 -0.308 0.826 sum -18.630 3.353 10.686 21.737 Atomic orbital electron populations 1.23072 0.76823 1.04521 1.02362 1.87915 1.23383 1.26288 1.96028 1.21087 0.76195 0.87004 1.07510 1.29298 0.99263 0.95208 0.79024 1.71983 0.99419 1.17710 1.30025 1.25393 0.94860 1.06444 0.88233 1.16896 0.81742 0.78868 0.85922 1.90737 1.85865 1.52697 1.14667 1.48194 1.06959 1.65921 1.09223 1.22130 1.04091 1.02739 0.77557 1.18815 0.79298 0.95321 0.90366 0.96452 1.21890 1.00942 0.95165 1.01065 1.21501 1.09797 1.00915 1.26286 0.92073 1.25725 0.96785 1.01282 0.94274 1.70001 1.19893 1.37732 1.27541 0.85396 0.77523 0.78866 0.78891 1.20741 1.20122 1.18635 1.75119 0.98216 1.16313 1.13854 1.85283 1.11272 1.62780 1.35808 0.90873 0.92142 0.88655 0.84275 0.86336 0.91231 0.89725 0.89709 0.90557 0.93105 0.95907 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -6.91 10.69 -148.98 -1.59 -8.50 16 3 C 0.16 2.01 6.56 71.24 0.47 2.48 16 4 C 0.19 4.71 8.13 88.36 0.72 5.43 16 5 N -0.46 -16.21 11.57 -302.78 -3.50 -19.71 16 6 C 0.12 4.87 7.71 137.33 1.06 5.93 16 7 C 0.58 28.25 7.70 86.96 0.67 28.92 16 8 O -0.56 -31.72 16.44 -3.64 -0.06 -31.78 16 9 N -0.57 -26.97 2.75 -829.51 -2.28 -29.26 16 10 C 0.08 2.86 8.62 127.77 1.10 3.97 16 11 C 0.26 14.23 2.63 44.24 0.12 14.34 16 12 H 0.02 1.11 6.91 -2.39 -0.02 1.09 16 13 C -0.13 -6.52 8.97 71.98 0.65 -5.88 16 14 C -0.55 -30.45 7.95 25.60 0.20 -30.24 16 15 H 0.06 3.33 7.43 -2.91 -0.02 3.31 16 16 C 0.02 1.09 5.30 84.65 0.45 1.54 16 17 N -0.91 -52.70 11.32 21.45 0.24 -52.46 16 18 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 N -0.33 -10.75 8.70 -59.37 -0.52 -11.27 16 23 O 0.12 3.05 11.29 74.44 0.84 3.89 16 24 H 0.07 0.19 8.14 -2.39 -0.02 0.18 16 25 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.94 5.30 -2.39 -0.01 2.92 16 31 H 0.08 3.19 7.11 -2.38 -0.02 3.17 16 32 H 0.08 4.11 6.07 -2.38 -0.01 4.09 16 33 H 0.05 2.27 7.67 -2.39 -0.02 2.25 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.75 303.99 2.95 -72.81 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 1.11 Total: 2.93 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 6.68 Total: 27.93 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -6.06 Total: -112.69 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.81 Total: -36.39 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -75.75 2.95 -72.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320409298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.199 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds