Wall clock time and date at job start Mon Mar 30 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34421 * 124.34930 * 2 1 4 4 O 1.21277 * 124.94211 * 359.62206 * 3 2 1 5 5 C 1.51287 * 110.11526 * 179.58835 * 3 2 1 6 6 C 1.54630 * 104.19244 * 343.74503 * 5 3 2 7 7 C 1.46765 * 124.34772 * 179.97438 * 2 1 3 8 8 H 1.08995 * 110.31635 * 77.98298 * 7 2 1 9 9 C 1.50700 * 110.24730 * 316.02008 * 7 2 1 10 10 O 1.21283 * 119.99803 * 343.95054 * 9 7 2 11 11 N 1.34777 * 119.99675 * 164.22929 * 9 7 2 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 C 1.50706 * 109.47174 * 179.97438 * 12 11 9 14 14 O 1.21295 * 119.99429 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00107 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99559 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00395 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99947 * 180.02562 * 16 15 13 19 19 N 1.31419 * 119.99402 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00241 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47092 * 60.00064 * 20 18 16 22 22 H 1.48496 * 109.47069 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47105 * 299.99687 * 20 18 16 24 24 H 1.08997 * 109.47540 * 270.00439 * 1 2 3 25 25 H 1.09010 * 109.47151 * 30.00416 * 1 2 3 26 26 H 1.09001 * 109.47016 * 150.00094 * 1 2 3 27 27 H 1.08997 * 110.48540 * 225.06711 * 5 3 2 28 28 H 1.08997 * 110.48692 * 102.42151 * 5 3 2 29 29 H 1.08993 * 110.97006 * 266.67380 * 6 5 3 30 30 H 1.09009 * 111.00032 * 142.93324 * 6 5 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 32 32 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 33 33 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 34 34 H 0.96993 * 120.00302 * 0.02562 * 15 13 12 35 35 H 0.97004 * 119.99339 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 -0.0066 5 6 3.6898 0.7378 0.0102 6 6 3.7009 -0.7487 0.4359 7 6 2.2930 -1.2117 0.0005 8 1 2.3308 -1.6447 -0.9990 9 6 1.7473 -2.2159 0.9828 10 8 0.9523 -1.8659 1.8292 11 7 2.1470 -3.5017 0.9241 12 6 1.6210 -4.4766 1.8828 13 6 2.2211 -5.8304 1.6030 14 8 3.0109 -5.9672 0.6926 15 7 1.8811 -6.8888 2.3650 16 6 2.4275 -8.1202 2.1107 17 1 3.1307 -8.2421 1.3001 18 6 2.0766 -9.2116 2.8959 19 7 1.2212 -9.0632 3.8825 20 14 2.8215 -10.8893 2.5500 21 1 4.2986 -10.8119 2.6828 22 1 2.2887 -11.8774 3.5219 23 1 2.4700 -11.3120 1.1705 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2326 1.3460 0.7338 28 1 4.1195 0.8529 -0.9849 29 1 3.8268 -0.8446 1.5143 30 1 4.4754 -1.3016 -0.0959 31 1 2.7827 -3.7816 0.2471 32 1 1.8795 -4.1665 2.8952 33 1 0.5368 -4.5332 1.7858 34 1 1.2498 -6.7793 3.0932 35 1 0.9765 -9.8250 4.4309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322533207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:05 Heat of formation + Delta-G solvation = -103.944926 kcal Electronic energy + Delta-G solvation = -20166.170016 eV Core-core repulsion = 16778.274029 eV Total energy + Delta-G solvation = -3387.895986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02239 -39.27371 -38.17814 -36.30702 -34.62061 -33.85505 -32.90142 -31.46716 -29.33461 -27.06952 -26.76699 -24.56561 -22.74089 -20.65402 -19.86580 -19.42267 -18.23585 -17.77207 -17.00351 -16.25486 -15.91842 -15.39209 -15.31802 -14.99949 -14.46990 -14.19221 -14.09182 -13.88659 -13.63375 -13.47144 -12.88192 -12.65481 -12.36954 -12.30941 -12.11365 -11.87492 -11.69348 -11.41063 -11.15871 -10.56169 -10.38239 -10.14461 -9.94447 -9.69671 -9.00808 -8.82176 -8.72135 -8.17818 -6.58329 -4.00806 2.36077 2.47894 2.72937 3.08552 3.16947 3.18648 3.25457 3.65232 4.03351 4.05197 4.14730 4.50396 4.66268 4.76860 4.83522 5.06677 5.10032 5.16944 5.38626 5.48250 5.52107 5.63000 5.77021 5.81935 5.83629 5.96552 6.21630 6.48157 6.88013 7.39195 7.58123 7.83770 7.96792 8.21231 8.36967 8.97139 9.31054 9.78327 10.58279 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.051463 B = 0.003296 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.948134 B = 8492.929785 C = 8803.335414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.600 5.600 3 C 0.519 3.481 4 O -0.534 6.534 5 C -0.152 4.152 6 C -0.121 4.121 7 C 0.114 3.886 8 H 0.107 0.893 9 C 0.504 3.496 10 O -0.535 6.535 11 N -0.700 5.700 12 C 0.109 3.891 13 C 0.426 3.574 14 O -0.598 6.598 15 N -0.547 5.547 16 C -0.308 4.308 17 H 0.106 0.894 18 C 0.027 3.973 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.412 0.588 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.396 0.604 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 12.841 -6.356 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.334 5.334 3 C 0.307 3.693 4 O -0.410 6.410 5 C -0.193 4.193 6 C -0.160 4.160 7 C 0.006 3.994 8 H 0.125 0.875 9 C 0.287 3.713 10 O -0.411 6.411 11 N -0.355 5.355 12 C -0.018 4.018 13 C 0.211 3.789 14 O -0.485 6.485 15 N -0.181 5.181 16 C -0.437 4.437 17 H 0.123 0.877 18 C -0.176 4.176 19 N -0.533 5.533 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.230 0.770 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.052 13.415 -6.192 14.916 hybrid contribution 0.108 -1.201 0.114 1.211 sum 2.160 12.214 -6.078 13.813 Atomic orbital electron populations 1.21575 0.77249 1.02290 1.03004 1.47853 1.06865 1.05732 1.72914 1.20840 0.89279 0.84129 0.75085 1.90721 1.78776 1.20841 1.50705 1.22362 0.94762 0.97085 1.05051 1.22621 0.94154 0.95466 1.03715 1.21641 0.91854 0.86212 0.99717 0.87503 1.20539 0.82202 0.82889 0.85654 1.90721 1.34209 1.79158 1.37038 1.45669 1.46930 1.07477 1.35402 1.20979 0.99207 0.88303 0.93357 1.19694 0.87214 0.85586 0.86367 1.90497 1.39251 1.84799 1.33956 1.41790 1.39747 1.07437 1.29124 1.19690 1.24219 0.83926 1.15860 0.87655 1.25342 0.96511 1.00350 0.95423 1.69609 1.32403 1.32860 1.18472 0.85860 0.79271 0.80475 0.78309 1.19721 1.20821 1.19727 0.91287 0.90945 0.91339 0.87568 0.87333 0.89197 0.87747 0.74931 0.89726 0.89757 0.77021 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 9.57 59.84 0.57 1.74 16 2 N -0.60 -7.16 3.01 -174.03 -0.52 -7.68 16 3 C 0.52 6.49 8.02 -10.86 -0.09 6.41 16 4 O -0.53 -8.66 17.59 5.56 0.10 -8.56 16 5 C -0.15 -1.22 6.86 -26.74 -0.18 -1.41 16 6 C -0.12 -0.95 6.67 -25.10 -0.17 -1.12 16 7 C 0.11 1.15 3.71 -68.17 -0.25 0.90 16 8 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 9 C 0.50 6.83 6.73 -10.98 -0.07 6.75 16 10 O -0.53 -9.01 14.94 5.55 0.08 -8.93 16 11 N -0.70 -10.02 5.53 -61.47 -0.34 -10.36 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 C 0.43 9.13 7.85 -10.98 -0.09 9.05 16 14 O -0.60 -14.31 15.24 5.54 0.08 -14.22 16 15 N -0.55 -12.94 5.29 -10.96 -0.06 -13.00 16 16 C -0.31 -8.06 9.68 -14.93 -0.14 -8.21 16 17 H 0.11 2.86 7.16 -52.49 -0.38 2.49 16 18 C 0.03 0.68 5.50 -17.46 -0.10 0.59 16 19 N -0.89 -23.22 13.05 55.50 0.72 -22.50 16 20 Si 0.93 19.92 29.55 -169.99 -5.02 14.90 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16 25 H 0.07 0.79 7.92 -51.92 -0.41 0.38 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 30 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.41 5.63 7.44 -40.82 -0.30 5.32 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 35 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 307.35 15.07 4.63 4.63 Total: -1.00 -32.74 307.35 -5.18 -37.92 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.31 Total: 11.30 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: -0.55 Total: 16.49 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.20 Total: -53.54 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: 0.27 Total: -31.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.74 -5.18 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322533207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.023 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds