Wall clock time and date at job start Mon Mar 30 2020 00:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34421 * 124.34930 * 2 1 4 4 O 1.21277 * 124.94211 * 359.62206 * 3 2 1 5 5 C 1.51287 * 110.11526 * 179.58835 * 3 2 1 6 6 C 1.54630 * 104.19244 * 343.74503 * 5 3 2 7 7 C 1.46765 * 124.34772 * 179.97438 * 2 1 3 8 8 H 1.08995 * 110.31635 * 77.98298 * 7 2 1 9 9 C 1.50700 * 110.24730 * 316.02008 * 7 2 1 10 10 O 1.21283 * 119.99803 * 343.95054 * 9 7 2 11 11 N 1.34777 * 119.99675 * 164.22929 * 9 7 2 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 C 1.50706 * 109.47174 * 179.97438 * 12 11 9 14 14 O 1.21295 * 119.99429 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00107 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99559 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00395 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99947 * 180.02562 * 16 15 13 19 19 N 1.31419 * 119.99402 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00241 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47092 * 60.00064 * 20 18 16 22 22 H 1.48496 * 109.47069 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47105 * 299.99687 * 20 18 16 24 24 H 1.08997 * 109.47540 * 270.00439 * 1 2 3 25 25 H 1.09010 * 109.47151 * 30.00416 * 1 2 3 26 26 H 1.09001 * 109.47016 * 150.00094 * 1 2 3 27 27 H 1.08997 * 110.48540 * 225.06711 * 5 3 2 28 28 H 1.08997 * 110.48692 * 102.42151 * 5 3 2 29 29 H 1.08993 * 110.97006 * 266.67380 * 6 5 3 30 30 H 1.09009 * 111.00032 * 142.93324 * 6 5 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 32 32 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 33 33 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 34 34 H 0.96993 * 120.00302 * 0.02562 * 15 13 12 35 35 H 0.97004 * 119.99339 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2442 -0.0066 5 6 3.6898 0.7378 0.0102 6 6 3.7009 -0.7487 0.4359 7 6 2.2930 -1.2117 0.0005 8 1 2.3308 -1.6447 -0.9990 9 6 1.7473 -2.2159 0.9828 10 8 0.9523 -1.8659 1.8292 11 7 2.1470 -3.5017 0.9241 12 6 1.6210 -4.4766 1.8828 13 6 2.2211 -5.8304 1.6030 14 8 3.0109 -5.9672 0.6926 15 7 1.8811 -6.8888 2.3650 16 6 2.4275 -8.1202 2.1107 17 1 3.1307 -8.2421 1.3001 18 6 2.0766 -9.2116 2.8959 19 7 1.2212 -9.0632 3.8825 20 14 2.8215 -10.8893 2.5500 21 1 4.2986 -10.8119 2.6828 22 1 2.2887 -11.8774 3.5219 23 1 2.4700 -11.3120 1.1705 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2326 1.3460 0.7338 28 1 4.1195 0.8529 -0.9849 29 1 3.8268 -0.8446 1.5143 30 1 4.4754 -1.3016 -0.0959 31 1 2.7827 -3.7816 0.2471 32 1 1.8795 -4.1665 2.8952 33 1 0.5368 -4.5332 1.7858 34 1 1.2498 -6.7793 3.0932 35 1 0.9765 -9.8250 4.4309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322533207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:04 Heat of formation + Delta-G solvation = -129.923475 kcal Electronic energy + Delta-G solvation = -20167.296530 eV Core-core repulsion = 16778.274029 eV Total energy + Delta-G solvation = -3389.022501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.98130 -40.59677 -39.72297 -37.33036 -36.24586 -35.36828 -33.72706 -33.35558 -30.46993 -28.37980 -27.64167 -26.29698 -23.56337 -21.74973 -21.38995 -20.54020 -20.02173 -18.92554 -17.93794 -17.48902 -17.20632 -16.71928 -16.67452 -16.41655 -15.99420 -15.59741 -15.39074 -14.83370 -14.80446 -14.55878 -13.98403 -13.80012 -13.58281 -13.52486 -13.41760 -13.10308 -12.89532 -12.79841 -12.45465 -12.13426 -12.05968 -11.54111 -11.22283 -10.94003 -10.54036 -10.24328 -10.07536 -9.79812 -8.50013 -6.00069 1.38137 1.39793 1.44214 1.45169 1.54923 1.77667 1.92960 2.15348 2.33193 3.12797 3.17654 3.26798 3.39325 3.67834 3.98758 4.05569 4.22870 4.30575 4.39000 4.43894 4.45314 4.60664 4.82957 4.83839 4.98011 5.03660 5.23093 5.31802 5.39590 5.92757 5.98774 6.44218 6.51176 7.01291 7.04790 7.11672 7.46138 7.95484 8.66556 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.051463 B = 0.003296 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.948134 B = 8492.929785 C = 8803.335414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.606 5.606 3 C 0.506 3.494 4 O -0.581 6.581 5 C -0.140 4.140 6 C -0.114 4.114 7 C 0.115 3.885 8 H 0.141 0.859 9 C 0.507 3.493 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.122 3.878 13 C 0.434 3.566 14 O -0.620 6.620 15 N -0.561 5.561 16 C -0.337 4.337 17 H 0.089 0.911 18 C -0.011 4.011 19 N -0.918 5.918 20 Si 0.995 3.005 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.269 1.269 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.419 0.581 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.398 0.602 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 12.643 -7.309 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.339 5.339 3 C 0.296 3.704 4 O -0.461 6.461 5 C -0.179 4.179 6 C -0.152 4.152 7 C 0.008 3.992 8 H 0.159 0.841 9 C 0.293 3.707 10 O -0.449 6.449 11 N -0.351 5.351 12 C -0.006 4.006 13 C 0.221 3.779 14 O -0.508 6.508 15 N -0.196 5.196 16 C -0.466 4.466 17 H 0.107 0.893 18 C -0.211 4.211 19 N -0.558 5.558 20 Si 0.819 3.181 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.194 1.194 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.258 0.742 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.373 13.211 -7.155 15.398 hybrid contribution -0.327 -1.074 0.394 1.190 sum 3.046 12.137 -6.761 14.223 Atomic orbital electron populations 1.21537 0.77810 1.03026 1.01877 1.48066 1.07018 1.06516 1.72264 1.21689 0.91292 0.83456 0.73932 1.90691 1.79970 1.22620 1.52837 1.22411 0.91369 0.97044 1.07121 1.22730 0.93339 0.95531 1.03615 1.21894 0.92451 0.84607 1.00221 0.84124 1.21144 0.81272 0.82756 0.85570 1.90721 1.35847 1.79611 1.38706 1.45619 1.47079 1.07388 1.35050 1.20759 0.99325 0.86053 0.94463 1.20404 0.85935 0.86627 0.84946 1.90476 1.40052 1.85627 1.34680 1.41855 1.40365 1.07514 1.29888 1.19719 1.25087 0.85533 1.16275 0.89325 1.26116 0.96669 1.03350 0.94994 1.69679 1.33164 1.33883 1.19039 0.84944 0.78521 0.76391 0.78270 1.19387 1.19933 1.19436 0.93358 0.90793 0.90033 0.86598 0.84317 0.90252 0.84170 0.74229 0.88872 0.88924 0.76806 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.29 9.57 127.77 1.22 3.51 16 2 N -0.61 -13.58 3.01 -823.09 -2.48 -16.06 16 3 C 0.51 12.00 8.02 87.90 0.71 12.70 16 4 O -0.58 -18.83 17.59 -3.02 -0.05 -18.88 16 5 C -0.14 -1.79 6.86 30.59 0.21 -1.58 16 6 C -0.11 -1.37 6.67 31.65 0.21 -1.16 16 7 C 0.12 2.00 3.71 44.69 0.17 2.17 16 8 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 9 C 0.51 12.79 6.73 87.66 0.59 13.38 16 10 O -0.57 -18.75 14.94 -3.04 -0.05 -18.80 16 11 N -0.70 -18.52 5.53 -466.79 -2.58 -21.11 16 12 C 0.12 3.94 6.15 85.64 0.53 4.46 16 13 C 0.43 18.36 7.85 87.66 0.69 19.04 16 14 O -0.62 -29.22 15.24 -3.08 -0.05 -29.27 16 15 N -0.56 -26.66 5.29 -306.97 -1.62 -28.28 16 16 C -0.34 -17.77 9.68 84.04 0.81 -16.96 16 17 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16 18 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 19 N -0.92 -47.55 13.05 21.67 0.28 -47.27 16 20 Si 1.00 40.35 29.55 68.60 2.03 42.38 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 24 H 0.05 1.30 7.46 -2.39 -0.02 1.28 16 25 H 0.07 1.64 7.92 -2.38 -0.02 1.62 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.14 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.17 7.90 -2.39 -0.02 1.15 16 30 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.42 10.37 7.44 -92.71 -0.69 9.68 16 32 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.40 18.32 7.90 -92.71 -0.73 17.59 16 35 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -71.57 307.35 0.80 -70.77 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.28 Total: 31.02 kcal Atomic # 6 Polarization: 29.89 SS G_CDS: 5.60 Total: 35.49 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -6.40 Total: -112.72 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -0.15 Total: -66.95 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.57 0.80 -70.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322533207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.150 kcal (2) G-P(sol) polarization free energy of solvation -71.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds