Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38676 * 120.78838 * 2 1 4 4 C 1.38174 * 119.16571 * 180.02562 * 3 2 1 5 5 N 1.31892 * 120.76170 * 359.97438 * 4 3 2 6 6 C 1.31850 * 121.73050 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.61978 * 180.27424 * 6 5 4 8 8 N 1.46498 * 109.47220 * 274.72718 * 7 6 5 9 9 C 1.38823 * 120.00116 * 180.02562 * 8 7 6 10 10 C 1.39801 * 119.58365 * 0.02562 * 9 8 7 11 11 C 1.38596 * 119.49097 * 179.97438 * 10 9 8 12 12 C 1.38381 * 118.68342 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14890 * 359.97438 * 12 11 10 14 14 C 1.41312 * 119.78486 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00349 * 359.97438 * 14 13 12 16 16 C 1.40029 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.30744 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99808 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47130 * 89.99956 * 18 16 14 20 20 H 1.48504 * 109.46813 * 209.99749 * 18 16 14 21 21 H 1.48497 * 109.47303 * 329.99650 * 18 16 14 22 22 N 1.31958 * 119.58900 * 179.72544 * 9 8 7 23 23 C 1.38235 * 120.75840 * 359.97438 * 6 5 4 24 24 H 1.09001 * 109.46935 * 269.97976 * 1 2 3 25 25 H 1.08994 * 109.46848 * 29.97494 * 1 2 3 26 26 H 1.08992 * 109.46596 * 149.98179 * 1 2 3 27 27 H 1.08004 * 120.42041 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.62058 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47207 * 34.73132 * 7 6 5 30 30 H 1.09007 * 109.46776 * 154.72745 * 7 6 5 31 31 H 0.97005 * 120.00055 * 359.97438 * 8 7 6 32 32 H 1.08005 * 120.25383 * 359.95098 * 10 9 8 33 33 H 1.08002 * 120.65387 * 180.02562 * 11 10 9 34 34 H 1.08000 * 120.42775 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99774 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.41461 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5985 -1.1515 0.0005 7 6 4.3802 -2.4398 0.0067 8 7 4.7355 -2.8021 -1.3676 9 6 5.4618 -3.9590 -1.6148 10 6 5.8492 -4.7724 -0.5458 11 6 6.5738 -5.9273 -0.7948 12 6 6.8931 -6.2417 -2.1041 13 6 6.4740 -5.3842 -3.1359 14 6 6.7922 -5.6926 -4.4777 15 1 7.3560 -6.5845 -4.7077 16 6 6.3773 -4.8411 -5.5091 17 7 5.6952 -3.7610 -5.2306 18 14 6.7985 -5.2484 -7.2828 19 1 5.7171 -6.0797 -7.8701 20 1 6.9340 -3.9907 -8.0607 21 1 8.0793 -5.9986 -7.3277 22 7 5.7728 -4.2804 -2.8563 23 6 2.2167 -1.1908 0.0021 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6967 2.1378 0.0004 28 1 4.1583 2.0756 -0.0010 29 1 5.2887 -2.3107 0.5949 30 1 3.7726 -3.2313 0.4456 31 1 4.4626 -2.2339 -2.1050 32 1 5.5862 -4.5026 0.4664 33 1 6.8824 -6.5695 0.0168 34 1 7.4571 -7.1346 -2.3302 35 1 5.4075 -3.1715 -5.9451 36 1 1.6966 -2.1373 0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326239527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = 69.524815 kcal Electronic energy + Delta-G solvation = -19038.045686 eV Core-core repulsion = 16100.813926 eV Total energy + Delta-G solvation = -2937.231760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33016 -38.16827 -35.32768 -33.95293 -33.25776 -31.57388 -30.27072 -28.77738 -27.96771 -25.73978 -25.26247 -23.13494 -21.60519 -21.02078 -20.18367 -17.32617 -16.67788 -16.59938 -16.09861 -15.30083 -14.86792 -14.66051 -14.36111 -13.97730 -13.53450 -13.29997 -13.25521 -12.81486 -12.75419 -12.69649 -12.46126 -11.87220 -11.83988 -11.35077 -11.15453 -10.94700 -10.58375 -10.41321 -9.89847 -9.55497 -9.48483 -9.40276 -9.08651 -8.84848 -7.86363 -7.45900 -6.47177 -6.27833 -4.42857 1.02842 1.20879 2.91704 3.14029 3.17473 3.28690 3.34192 3.64116 4.02120 4.24689 4.46987 4.57631 4.63708 4.88981 4.97966 5.07659 5.24503 5.30735 5.43560 5.61882 5.73288 5.74621 5.96617 6.07150 6.19313 6.20765 6.22093 6.61465 6.66321 6.90023 6.93729 6.97905 7.29464 7.63870 7.85535 7.96047 8.02447 8.20890 8.40020 8.71872 8.84948 9.16428 10.29494 10.45330 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.004383 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.616432 B = 6386.416341 C = 7235.565267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.177 4.177 4 C 0.101 3.899 5 N -0.472 5.472 6 C 0.126 3.874 7 C 0.193 3.807 8 N -0.731 5.731 9 C 0.413 3.587 10 C -0.367 4.367 11 C -0.031 4.031 12 C -0.317 4.317 13 C 0.293 3.707 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.904 3.096 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.531 5.531 23 C -0.156 4.156 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.155 0.845 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.269 0.731 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 8.677 8.155 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.056 4.056 5 N -0.182 5.182 6 C -0.012 4.012 7 C 0.066 3.934 8 N -0.368 5.368 9 C 0.174 3.826 10 C -0.393 4.393 11 C -0.056 4.056 12 C -0.340 4.340 13 C 0.166 3.834 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.338 5.338 18 Si 0.729 3.271 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.252 5.252 23 C -0.176 4.176 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.172 0.828 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.770 9.346 7.580 14.890 hybrid contribution -0.590 -0.353 -0.317 0.757 sum -9.361 8.993 7.263 14.874 Atomic orbital electron populations 1.20820 0.90268 1.03408 1.02735 1.20336 0.96766 0.92978 0.95373 1.22033 0.95741 0.98529 1.03446 1.22761 0.91689 0.96141 0.95027 1.67549 1.41304 0.98031 1.11281 1.21379 0.91096 0.93881 0.94863 1.19856 0.97703 0.89611 0.86182 1.43963 1.61948 1.25609 1.05305 1.18472 0.88208 0.85194 0.90758 1.20603 1.19281 1.02739 0.96703 1.20585 0.94779 0.94651 0.95549 1.21531 1.14521 1.04486 0.93428 1.18192 0.86467 0.85917 0.92818 1.19580 1.30066 1.07305 0.89785 0.89894 1.26050 0.93916 0.94373 1.01011 1.70160 1.22527 1.07908 1.33173 0.86389 0.79932 0.78765 0.82040 1.19533 1.20286 1.18585 1.68193 1.21123 1.20317 1.15603 1.21948 0.94799 0.98953 1.01905 0.90613 0.91098 0.90876 0.85001 0.82778 0.91214 0.91489 0.76944 0.89157 0.88916 0.88718 0.91993 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.06 36.01 0.36 -0.53 16 2 C -0.05 -0.51 5.92 -104.32 -0.62 -1.13 16 3 C -0.18 -1.85 9.82 -39.44 -0.39 -2.24 16 4 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 5 N -0.47 -7.38 10.27 -9.47 -0.10 -7.48 16 6 C 0.13 1.92 6.15 -82.59 -0.51 1.41 16 7 C 0.19 3.28 5.19 -5.20 -0.03 3.25 16 8 N -0.73 -15.57 5.71 -61.57 -0.35 -15.93 16 9 C 0.41 10.44 7.65 -155.32 -1.19 9.25 16 10 C -0.37 -8.67 9.34 -38.87 -0.36 -9.04 16 11 C -0.03 -0.74 10.15 -39.40 -0.40 -1.14 16 12 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 13 C 0.29 8.36 6.55 -85.00 -0.56 7.80 16 14 C -0.44 -12.05 9.14 -37.74 -0.34 -12.40 16 15 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 16 C 0.07 1.87 5.50 -17.34 -0.10 1.78 16 17 N -0.72 -19.57 11.46 55.55 0.64 -18.94 16 18 Si 0.90 19.12 29.56 -169.99 -5.02 14.09 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 22 N -0.53 -15.10 7.89 -10.33 -0.08 -15.18 16 23 C -0.16 -2.01 9.43 -39.44 -0.37 -2.38 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16 30 H 0.07 1.04 7.82 -51.93 -0.41 0.64 16 31 H 0.40 8.73 8.58 -40.82 -0.35 8.38 16 32 H 0.09 1.88 6.68 -52.48 -0.35 1.53 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.27 6.70 8.29 -40.82 -0.34 6.36 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 313.89 15.07 4.73 4.73 Total: -1.00 -31.75 313.89 -9.70 -41.46 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.44 Total: 10.12 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -5.07 Total: -12.87 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.11 Total: -57.53 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.75 -9.70 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326239527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.981 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds