Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38676 * 120.78838 * 2 1 4 4 C 1.38174 * 119.16571 * 180.02562 * 3 2 1 5 5 N 1.31892 * 120.76170 * 359.97438 * 4 3 2 6 6 C 1.31850 * 121.73050 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.61978 * 180.27424 * 6 5 4 8 8 N 1.46498 * 109.47220 * 274.72718 * 7 6 5 9 9 C 1.38823 * 120.00116 * 180.02562 * 8 7 6 10 10 C 1.39801 * 119.58365 * 0.02562 * 9 8 7 11 11 C 1.38596 * 119.49097 * 179.97438 * 10 9 8 12 12 C 1.38381 * 118.68342 * 359.97438 * 11 10 9 13 13 C 1.40558 * 119.14890 * 359.97438 * 12 11 10 14 14 C 1.41312 * 119.78486 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00349 * 359.97438 * 14 13 12 16 16 C 1.40029 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.30744 * 120.00106 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99808 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47130 * 89.99956 * 18 16 14 20 20 H 1.48504 * 109.46813 * 209.99749 * 18 16 14 21 21 H 1.48497 * 109.47303 * 329.99650 * 18 16 14 22 22 N 1.31958 * 119.58900 * 179.72544 * 9 8 7 23 23 C 1.38235 * 120.75840 * 359.97438 * 6 5 4 24 24 H 1.09001 * 109.46935 * 269.97976 * 1 2 3 25 25 H 1.08994 * 109.46848 * 29.97494 * 1 2 3 26 26 H 1.08992 * 109.46596 * 149.98179 * 1 2 3 27 27 H 1.08004 * 120.42041 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.62058 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47207 * 34.73132 * 7 6 5 30 30 H 1.09007 * 109.46776 * 154.72745 * 7 6 5 31 31 H 0.97005 * 120.00055 * 359.97438 * 8 7 6 32 32 H 1.08005 * 120.25383 * 359.95098 * 10 9 8 33 33 H 1.08002 * 120.65387 * 180.02562 * 11 10 9 34 34 H 1.08000 * 120.42775 * 179.97438 * 12 11 10 35 35 H 0.96999 * 119.99774 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.41461 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5985 -1.1515 0.0005 7 6 4.3802 -2.4398 0.0067 8 7 4.7355 -2.8021 -1.3676 9 6 5.4618 -3.9590 -1.6148 10 6 5.8492 -4.7724 -0.5458 11 6 6.5738 -5.9273 -0.7948 12 6 6.8931 -6.2417 -2.1041 13 6 6.4740 -5.3842 -3.1359 14 6 6.7922 -5.6926 -4.4777 15 1 7.3560 -6.5845 -4.7077 16 6 6.3773 -4.8411 -5.5091 17 7 5.6952 -3.7610 -5.2306 18 14 6.7985 -5.2484 -7.2828 19 1 5.7171 -6.0797 -7.8701 20 1 6.9340 -3.9907 -8.0607 21 1 8.0793 -5.9986 -7.3277 22 7 5.7728 -4.2804 -2.8563 23 6 2.2167 -1.1908 0.0021 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6967 2.1378 0.0004 28 1 4.1583 2.0756 -0.0010 29 1 5.2887 -2.3107 0.5949 30 1 3.7726 -3.2313 0.4456 31 1 4.4626 -2.2339 -2.1050 32 1 5.5862 -4.5026 0.4664 33 1 6.8824 -6.5695 0.0168 34 1 7.4571 -7.1346 -2.3302 35 1 5.4075 -3.1715 -5.9451 36 1 1.6966 -2.1373 0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326239527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = 50.359833 kcal Electronic energy + Delta-G solvation = -19038.876742 eV Core-core repulsion = 16100.813926 eV Total energy + Delta-G solvation = -2938.062816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32484 -40.06021 -36.90988 -35.26961 -34.76261 -32.92586 -32.16064 -30.51153 -28.74055 -27.36738 -26.97466 -24.10931 -23.40758 -22.52528 -21.71049 -19.27004 -18.24317 -17.63133 -17.17110 -16.73182 -16.52023 -16.15790 -15.89052 -15.31212 -15.02782 -14.79245 -14.70969 -14.09127 -13.80522 -13.66552 -13.61317 -13.37290 -13.30618 -12.83844 -12.72700 -12.59808 -12.29836 -12.21376 -11.74705 -11.31657 -10.70113 -10.46036 -10.40508 -10.07285 -9.84255 -9.44754 -8.32738 -8.22636 -6.48182 0.04910 0.29547 1.06146 1.34810 1.40945 1.54657 1.58775 2.25061 2.46932 2.92628 3.02971 3.25786 3.64001 3.83452 4.04601 4.12758 4.17419 4.35623 4.41375 4.54285 4.58725 4.68741 4.78887 4.79339 4.86318 4.98342 5.01070 5.04803 5.10517 5.21861 5.34528 5.37264 5.71136 5.76801 5.96547 6.05842 6.21795 6.52561 6.80277 6.90550 7.03467 7.19212 8.33864 8.51448 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.004383 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.616432 B = 6386.416341 C = 7235.565267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.166 4.166 4 C 0.088 3.912 5 N -0.511 5.511 6 C 0.101 3.899 7 C 0.195 3.805 8 N -0.726 5.726 9 C 0.395 3.605 10 C -0.366 4.366 11 C -0.028 4.028 12 C -0.342 4.342 13 C 0.259 3.741 14 C -0.472 4.472 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.755 5.755 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.255 1.255 22 N -0.566 5.566 23 C -0.163 4.163 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.389 0.611 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.275 0.725 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 9.601 8.567 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.056 4.056 3 C -0.185 4.185 4 C -0.069 4.069 5 N -0.221 5.221 6 C -0.036 4.036 7 C 0.070 3.930 8 N -0.361 5.361 9 C 0.154 3.846 10 C -0.392 4.392 11 C -0.052 4.052 12 C -0.365 4.365 13 C 0.132 3.868 14 C -0.504 4.504 15 H 0.106 0.894 16 C -0.196 4.196 17 N -0.377 5.377 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.179 1.179 22 N -0.289 5.289 23 C -0.183 4.183 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.187 0.813 28 H 0.195 0.805 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.222 0.778 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.125 10.278 8.043 16.518 hybrid contribution -0.250 -0.526 -0.285 0.648 sum -10.375 9.752 7.759 16.216 Atomic orbital electron populations 1.20895 0.87672 1.04333 1.04052 1.20773 0.98598 0.92330 0.93894 1.22441 0.95063 0.99976 1.01050 1.23254 0.93069 0.95882 0.94741 1.67446 1.42829 0.99081 1.12769 1.21110 0.91872 0.93076 0.97511 1.19953 0.97885 0.91491 0.83630 1.44135 1.60878 1.24186 1.06940 1.18929 0.88510 0.86504 0.90623 1.20957 1.18335 1.02279 0.97640 1.21013 0.93552 0.94869 0.95796 1.21708 1.15708 1.04941 0.94135 1.18691 0.87244 0.86777 0.94121 1.19959 1.31462 1.08366 0.90625 0.89379 1.26993 0.93206 0.93753 1.05659 1.70272 1.23514 1.08990 1.34947 0.85151 0.79875 0.78743 0.75520 1.18662 1.19451 1.17884 1.68163 1.22286 1.21017 1.17412 1.22086 0.93963 1.00410 1.01871 0.88937 0.89345 0.90833 0.81319 0.80502 0.92081 0.90039 0.77830 0.86281 0.85026 0.87755 0.91476 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.06 71.24 0.72 -0.66 16 2 C -0.05 -0.93 5.92 -19.67 -0.12 -1.05 16 3 C -0.17 -3.00 9.82 22.36 0.22 -2.78 16 4 C 0.09 2.02 11.18 84.67 0.95 2.97 16 5 N -0.51 -15.95 10.27 -183.89 -1.89 -17.84 16 6 C 0.10 3.09 6.15 42.55 0.26 3.35 16 7 C 0.20 6.70 5.19 85.63 0.44 7.14 16 8 N -0.73 -31.76 5.71 -348.72 -1.99 -33.75 16 9 C 0.39 20.38 7.65 133.42 1.02 21.40 16 10 C -0.37 -17.15 9.34 22.73 0.21 -16.94 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 12 C -0.34 -17.96 9.83 22.87 0.22 -17.73 16 13 C 0.26 15.27 6.55 40.18 0.26 15.53 16 14 C -0.47 -26.99 9.14 23.46 0.21 -26.78 16 15 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 16 C 0.03 1.35 5.50 85.29 0.47 1.82 16 17 N -0.75 -42.57 11.46 21.84 0.25 -42.32 16 18 Si 0.99 39.75 29.56 68.60 2.03 41.78 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 N -0.57 -33.37 7.89 -186.58 -1.47 -34.84 16 23 C -0.16 -4.04 9.43 22.36 0.21 -3.83 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.80 8.10 -2.39 -0.02 0.78 16 26 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 27 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.06 2.17 7.92 -2.39 -0.02 2.15 16 30 H 0.08 2.51 7.82 -2.38 -0.02 2.49 16 31 H 0.39 17.87 8.58 -92.70 -0.80 17.07 16 32 H 0.12 4.78 6.68 -2.91 -0.02 4.76 16 33 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 34 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 35 H 0.27 14.04 8.29 -92.71 -0.77 13.27 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.56 313.89 2.54 -69.02 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.30 Total: 36.59 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 5.31 Total: -18.63 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.10 Total: -128.76 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -71.56 2.54 -69.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326239527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.381 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds