Wall clock time and date at job start Mon Mar 30 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99697 * 2 1 4 4 H 1.48496 * 109.47043 * 264.55414 * 3 2 1 5 5 H 1.48500 * 109.47166 * 24.54984 * 3 2 1 6 6 H 1.48497 * 109.47058 * 144.55618 * 3 2 1 7 7 C 1.37872 * 120.00609 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99712 * 356.93304 * 7 2 1 9 9 C 1.50703 * 120.00467 * 176.93611 * 7 2 1 10 10 C 1.52995 * 115.55759 * 299.25949 * 9 7 2 11 11 N 1.46499 * 109.47745 * 319.86479 * 10 9 7 12 12 C 1.38313 * 120.00584 * 182.33402 * 11 10 9 13 13 N 1.33197 * 118.67889 * 3.53851 * 12 11 10 14 14 C 1.31638 * 121.56264 * 179.74608 * 13 12 11 15 15 C 1.40748 * 118.47508 * 0.50972 * 14 13 12 16 16 C 1.40241 * 122.04424 * 179.73101 * 15 14 13 17 17 C 1.36250 * 119.50442 * 180.02562 * 16 15 14 18 18 C 1.39321 * 120.95649 * 359.97438 * 17 16 15 19 19 C 1.36232 * 121.06931 * 0.02562 * 18 17 16 20 20 C 1.40256 * 119.59434 * 359.97438 * 19 18 17 21 21 N 1.31865 * 118.68529 * 183.80217 * 12 11 10 22 22 C 1.52995 * 117.49846 * 84.95003 * 9 7 2 23 23 C 1.52992 * 60.03361 * 107.47664 * 22 9 7 24 24 H 0.97005 * 120.00270 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47090 * 79.86631 * 10 9 7 26 26 H 1.09007 * 109.47070 * 199.86178 * 10 9 7 27 27 H 0.96999 * 119.99375 * 2.33724 * 11 10 9 28 28 H 1.07994 * 120.76030 * 180.23687 * 14 13 12 29 29 H 1.08008 * 120.24826 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.52337 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.46542 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.20441 * 180.02562 * 19 18 17 33 33 H 1.09005 * 117.50031 * 214.98409 * 22 9 7 34 34 H 1.09004 * 117.49927 * 359.97373 * 22 9 7 35 35 H 1.09006 * 117.50061 * 107.49759 * 23 22 9 36 36 H 1.08997 * 117.50236 * 252.51797 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6116 1.9801 -1.3937 5 1 1.3936 2.6832 0.5817 6 1 3.4843 1.4763 0.8119 7 6 2.0046 -1.1939 -0.0005 8 1 1.4658 -2.1287 0.0491 9 6 3.5100 -1.1948 -0.0703 10 6 4.1132 -0.5524 -1.3210 11 7 3.3160 -0.9225 -2.4931 12 6 3.6984 -0.4967 -3.7522 13 7 4.8340 0.1880 -3.8779 14 6 5.2544 0.6162 -5.0496 15 6 4.4680 0.3446 -6.1849 16 6 4.8416 0.7701 -7.4679 17 6 4.0407 0.4791 -8.5311 18 6 2.8567 -0.2354 -8.3620 19 6 2.4638 -0.6637 -7.1298 20 6 3.2626 -0.3829 -6.0117 21 7 2.9216 -0.7803 -4.7793 22 6 4.2782 -1.0403 1.2438 23 6 4.2447 -2.3946 0.5329 24 1 -0.4851 0.8401 0.0004 25 1 4.1126 0.5318 -1.2089 26 1 5.1368 -0.9036 -1.4522 27 1 2.5199 -1.4662 -2.3860 28 1 6.1792 1.1670 -5.1371 29 1 5.7573 1.3244 -7.6122 30 1 4.3279 0.8069 -9.5192 31 1 2.2398 -0.4524 -9.2215 32 1 1.5435 -1.2169 -7.0149 33 1 5.2133 -0.4808 1.2174 34 1 3.6947 -0.9375 2.1588 35 1 5.1578 -2.7263 0.0386 36 1 3.6389 -3.1828 0.9799 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328481954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:30 Heat of formation + Delta-G solvation = 82.679475 kcal Electronic energy + Delta-G solvation = -19675.767075 eV Core-core repulsion = 16739.105744 eV Total energy + Delta-G solvation = -2936.661331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.12939 -39.44374 -38.43939 -35.65089 -34.83382 -34.34919 -31.96887 -30.75221 -28.22264 -26.95388 -25.81122 -23.95916 -23.15868 -23.07311 -21.10230 -19.39059 -19.35877 -18.22700 -17.83421 -17.09031 -16.38425 -16.25825 -16.07395 -15.43540 -15.14778 -15.00396 -14.95853 -14.51268 -14.46400 -13.98523 -13.30198 -13.26584 -13.04740 -12.68439 -12.54024 -12.24253 -12.13738 -12.07970 -11.72027 -11.49315 -11.06643 -10.86096 -10.63539 -10.29533 -10.05329 -9.77380 -8.59061 -8.37075 -6.41067 -0.52279 -0.01718 1.05595 1.26795 1.29627 1.39354 2.01902 2.18066 2.28211 2.94211 3.20562 3.22417 3.34049 3.60102 3.78891 3.83691 4.01980 4.16794 4.27885 4.35729 4.42169 4.45613 4.55921 4.74435 4.76516 4.90385 4.90753 5.00085 5.12190 5.20027 5.34978 5.41518 5.50640 5.55001 5.62734 5.88301 6.04644 6.13499 6.27863 6.61224 6.71397 7.27016 7.42763 8.77396 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.005310 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.057077 B = 5271.853719 C = 5573.089535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.039 3.961 3 Si 0.928 3.072 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.226 1.226 7 C -0.479 4.479 8 H 0.039 0.961 9 C -0.051 4.051 10 C 0.178 3.822 11 N -0.676 5.676 12 C 0.552 3.448 13 N -0.586 5.586 14 C 0.239 3.761 15 C -0.240 4.240 16 C -0.043 4.043 17 C -0.153 4.153 18 C -0.052 4.052 19 C -0.159 4.159 20 C 0.177 3.823 21 N -0.619 5.619 22 C -0.176 4.176 23 C -0.160 4.160 24 H 0.264 0.736 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.414 0.586 28 H 0.224 0.776 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.138 3.200 -16.440 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.160 4.160 3 Si 0.755 3.245 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.148 1.148 7 C -0.517 4.517 8 H 0.057 0.943 9 C -0.052 4.052 10 C 0.054 3.946 11 N -0.311 5.311 12 C 0.194 3.806 13 N -0.306 5.306 14 C 0.058 3.942 15 C -0.247 4.247 16 C -0.063 4.063 17 C -0.171 4.171 18 C -0.073 4.073 19 C -0.179 4.179 20 C 0.048 3.952 21 N -0.347 5.347 22 C -0.214 4.214 23 C -0.197 4.197 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.253 0.747 28 H 0.240 0.760 29 H 0.190 0.810 30 H 0.184 0.816 31 H 0.177 0.823 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.674 2.947 -15.233 20.681 hybrid contribution -0.829 0.593 -0.207 1.040 sum 12.845 3.541 -15.440 20.394 Atomic orbital electron populations 1.70010 1.08077 1.27854 1.51802 1.25549 0.94880 1.02031 0.93537 0.86123 0.80428 0.79715 0.78225 1.21746 1.22694 1.14837 1.20341 0.88790 0.92691 1.49870 0.94270 1.19545 0.92802 1.01634 0.91197 1.20830 0.93239 0.97241 0.83299 1.44532 1.30290 1.54751 1.01478 1.19612 0.86078 0.87770 0.87095 1.67818 1.15928 1.16986 1.29839 1.24326 0.97331 0.87889 0.84662 1.19672 0.98914 1.07812 0.98323 1.21307 1.00189 0.95731 0.89098 1.21307 0.94724 1.00354 1.00749 1.21389 0.96378 0.93183 0.96331 1.20790 1.00791 1.04800 0.91567 1.19240 0.93015 0.92231 0.90728 1.68306 1.34669 1.32092 0.99666 1.23071 1.01560 1.00288 0.96504 1.22898 1.01471 0.91177 1.04153 0.92677 0.94514 0.90777 0.74715 0.76023 0.80966 0.81642 0.82269 0.85896 0.88208 0.90088 0.87928 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.85 13.96 21.44 0.30 -58.55 16 2 C 0.04 2.28 5.47 84.65 0.46 2.74 16 3 Si 0.93 46.14 24.65 68.60 1.69 47.83 16 4 H -0.29 -15.00 6.93 99.48 0.69 -14.31 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 6 H -0.23 -10.01 6.32 99.48 0.63 -9.38 16 7 C -0.48 -26.54 8.02 25.60 0.21 -26.33 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 9 C -0.05 -2.27 1.20 -52.91 -0.06 -2.33 16 10 C 0.18 7.62 4.82 86.38 0.42 8.04 16 11 N -0.68 -31.03 5.51 -351.06 -1.93 -32.96 16 12 C 0.55 23.92 8.39 261.50 2.19 26.11 16 13 N -0.59 -21.58 9.49 -196.70 -1.87 -23.45 16 14 C 0.24 6.36 11.15 85.34 0.95 7.31 16 15 C -0.24 -6.48 5.74 -21.28 -0.12 -6.60 16 16 C -0.04 -0.72 9.81 22.29 0.22 -0.50 16 17 C -0.15 -2.24 9.95 22.07 0.22 -2.02 16 18 C -0.05 -0.97 9.95 22.06 0.22 -0.75 16 19 C -0.16 -4.54 10.01 22.29 0.22 -4.31 16 20 C 0.18 6.19 6.62 40.21 0.27 6.45 16 21 N -0.62 -26.81 10.46 -191.72 -2.01 -28.81 16 22 C -0.18 -6.80 8.82 30.59 0.27 -6.53 16 23 C -0.16 -6.02 9.88 30.62 0.30 -5.72 16 24 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 25 H 0.04 1.66 4.95 -2.39 -0.01 1.65 16 26 H 0.07 2.82 7.94 -2.38 -0.02 2.80 16 27 H 0.41 20.73 7.51 -92.71 -0.70 20.04 16 28 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.10 3.30 8.14 -2.38 -0.02 3.29 16 34 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 35 H 0.10 3.29 8.09 -2.38 -0.02 3.27 16 36 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -74.83 303.83 2.26 -72.57 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.31 Total: 27.83 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.76 Total: -4.45 kcal Atomic # 7 Polarization: -138.27 SS G_CDS: -5.51 Total: -143.77 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.69 Total: 47.83 kcal Total: -74.83 2.26 -72.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328481954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.247 kcal (2) G-P(sol) polarization free energy of solvation -74.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds