Wall clock time and date at job start Mon Mar 30 2020 00:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53232 * 88.08401 * 207.20841 * 5 4 2 7 7 C 1.50704 * 114.32916 * 220.47066 * 6 5 4 8 8 O 1.21282 * 119.99419 * 93.76119 * 7 6 5 9 9 N 1.34773 * 119.99989 * 273.76178 * 7 6 5 10 10 C 1.46500 * 119.99972 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46984 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99914 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99813 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99922 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00202 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00082 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00211 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99780 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47023 * 89.99804 * 18 16 14 20 20 H 1.48500 * 109.46762 * 209.99886 * 18 16 14 21 21 H 1.48496 * 109.47119 * 329.99538 * 18 16 14 22 22 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 26 26 H 1.08992 * 113.46685 * 321.94854 * 5 4 2 27 27 H 1.09001 * 113.46148 * 92.38027 * 5 4 2 28 28 H 1.09006 * 114.19295 * 87.73034 * 6 5 4 29 29 H 0.97004 * 119.99779 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.47284 * 300.00302 * 10 9 7 31 31 H 1.09000 * 109.46733 * 60.00083 * 10 9 7 32 32 H 0.96997 * 119.99867 * 0.02562 * 13 11 10 33 33 H 0.96998 * 119.99748 * 180.02562 * 17 16 14 34 34 H 1.08996 * 113.47127 * 267.61738 * 22 4 2 35 35 H 1.09000 * 113.46848 * 38.06571 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1647 -2.8710 0.6990 7 6 3.8766 -4.1043 0.2054 8 8 4.7082 -4.0137 -0.6728 9 7 3.5891 -5.3076 0.7399 10 6 4.2807 -6.5065 0.2597 11 6 3.7810 -7.7110 1.0150 12 8 2.9305 -7.5809 1.8699 13 7 4.2785 -8.9330 0.7398 14 6 3.8243 -10.0288 1.4272 15 1 3.0676 -9.9128 2.1891 16 6 4.3376 -11.2885 1.1439 17 7 3.9019 -12.3389 1.8025 18 14 5.6470 -11.4890 -0.1733 19 1 6.9920 -11.3521 0.4409 20 1 5.5213 -12.8313 -0.7958 21 1 5.4683 -10.4430 -1.2121 22 6 3.5942 -1.5740 -0.0002 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 -0.8900 -0.5138 25 1 -0.3633 0.8900 -0.5138 26 1 0.9614 -2.8244 0.6275 27 1 1.7565 -3.0286 -0.9918 28 1 3.1274 -2.8012 1.7861 29 1 2.9242 -5.3799 1.4425 30 1 4.0847 -6.6374 -0.8045 31 1 5.3531 -6.3963 0.4207 32 1 4.9584 -9.0371 0.0558 33 1 4.2605 -13.2183 1.6049 34 1 4.0003 -1.7333 -0.9991 35 1 4.2288 -0.9380 0.6169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328647864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:10 Heat of formation + Delta-G solvation = -65.720841 kcal Electronic energy + Delta-G solvation = -19688.418988 eV Core-core repulsion = 16302.180522 eV Total energy + Delta-G solvation = -3386.238466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12380 -39.44006 -38.49498 -37.54014 -34.65111 -33.86221 -31.88272 -31.52399 -29.42743 -27.78804 -26.31136 -24.75958 -23.18361 -20.29329 -19.69185 -19.28824 -18.73785 -17.74463 -17.22852 -16.26911 -15.96635 -15.62549 -15.47370 -15.31449 -14.88700 -14.51444 -14.05275 -13.53314 -13.29941 -13.16508 -12.93698 -12.81135 -12.74035 -12.55539 -12.27896 -12.22806 -12.11698 -11.29421 -11.14248 -10.69945 -10.32018 -10.12643 -9.91117 -9.76610 -9.10260 -9.03272 -8.86007 -8.37405 -6.46992 -4.00002 2.29164 2.42189 2.45843 2.94225 2.99179 3.07616 3.16907 3.47839 3.88858 3.97827 4.13440 4.44243 4.50982 4.70940 4.84756 4.86008 5.02299 5.05687 5.07632 5.13092 5.31353 5.35155 5.53681 5.58257 5.67781 5.70454 5.73753 6.39306 7.34555 7.36921 7.55259 7.81860 7.92847 8.16392 8.38020 8.75000 9.22873 9.55451 10.65000 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.048317 B = 0.003077 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.365790 B = 9098.815216 C = 9469.333254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.542 3.458 3 O -0.547 6.547 4 N -0.650 5.650 5 C 0.118 3.882 6 C -0.152 4.152 7 C 0.526 3.474 8 O -0.543 6.543 9 N -0.701 5.701 10 C 0.105 3.895 11 C 0.436 3.564 12 O -0.580 6.580 13 N -0.575 5.575 14 C -0.312 4.312 15 H 0.122 0.878 16 C 0.046 3.954 17 N -0.873 5.873 18 Si 0.879 3.121 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.267 1.267 22 C 0.125 3.875 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.414 0.586 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.375 0.625 33 H 0.276 0.724 34 H 0.102 0.898 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 16.867 -4.713 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.333 3.667 3 O -0.424 6.424 4 N -0.387 5.387 5 C -0.005 4.005 6 C -0.174 4.174 7 C 0.310 3.690 8 O -0.421 6.421 9 N -0.355 5.355 10 C -0.023 4.023 11 C 0.222 3.778 12 O -0.464 6.464 13 N -0.212 5.212 14 C -0.440 4.440 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.511 5.511 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.192 1.192 22 C 0.003 3.997 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.148 0.852 29 H 0.252 0.748 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.208 0.792 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.348 17.522 -4.722 18.454 hybrid contribution 0.727 -0.658 -0.658 1.181 sum -2.621 16.865 -5.380 17.895 Atomic orbital electron populations 1.21841 0.90897 1.04928 1.04943 1.20414 0.90159 0.81129 0.75025 1.90739 1.70853 1.30264 1.50542 1.49650 1.09744 1.05510 1.73803 1.22864 0.96869 0.79452 1.01357 1.23063 0.97732 0.93803 1.02845 1.19964 0.82817 0.83956 0.82220 1.90717 1.33939 1.86311 1.31097 1.45701 1.43081 1.05707 1.41024 1.21015 0.97638 0.84589 0.99063 1.19608 0.86687 0.84038 0.87468 1.90542 1.34986 1.84926 1.35959 1.42129 1.37057 1.06771 1.35248 1.19438 1.22669 0.83436 1.18461 0.86046 1.25077 0.97915 0.95119 0.97754 1.69615 1.42064 0.99207 1.40242 0.86669 0.82236 0.78916 0.81654 1.19360 1.19945 1.19224 1.22828 0.83991 0.91016 1.01893 0.88657 0.90116 0.88700 0.88961 0.88760 0.85185 0.74776 0.89571 0.89555 0.79220 0.91311 0.88033 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.18 36.01 0.37 -0.70 16 2 C 0.54 5.89 8.19 -10.98 -0.09 5.80 16 3 O -0.55 -8.37 17.88 5.56 0.10 -8.27 16 4 N -0.65 -6.29 3.69 -185.39 -0.68 -6.98 16 5 C 0.12 0.88 7.81 -8.64 -0.07 0.81 16 6 C -0.15 -1.35 4.48 -91.40 -0.41 -1.76 16 7 C 0.53 6.48 7.40 -10.98 -0.08 6.40 16 8 O -0.54 -8.40 15.95 5.56 0.09 -8.31 16 9 N -0.70 -9.40 5.53 -61.47 -0.34 -9.74 16 10 C 0.10 1.62 6.15 -5.19 -0.03 1.59 16 11 C 0.44 8.92 7.85 -10.99 -0.09 8.83 16 12 O -0.58 -13.70 15.24 5.55 0.08 -13.62 16 13 N -0.57 -12.69 5.09 -10.96 -0.06 -12.75 16 14 C -0.31 -8.28 10.16 -14.93 -0.15 -8.43 16 15 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 16 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 17 N -0.87 -24.30 13.96 55.50 0.77 -23.52 16 18 Si 0.88 18.37 27.74 -169.99 -4.71 13.65 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16 22 C 0.13 1.26 7.97 -8.51 -0.07 1.19 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.38 7.94 -51.93 -0.41 -0.03 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.41 5.40 7.44 -40.82 -0.30 5.10 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 33 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.10 1.10 7.45 -51.93 -0.39 0.71 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -34.18 310.87 -5.05 -39.23 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.27 Total: 10.80 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -0.72 Total: 14.82 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.31 Total: -52.99 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: 0.27 Total: -30.20 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.71 Total: 13.65 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.18 -5.05 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328647864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.488 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds