Wall clock time and date at job start Mon Mar 30 2020 00:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53232 * 88.08401 * 207.20841 * 5 4 2 7 7 C 1.50704 * 114.32916 * 220.47066 * 6 5 4 8 8 O 1.21282 * 119.99419 * 93.76119 * 7 6 5 9 9 N 1.34773 * 119.99989 * 273.76178 * 7 6 5 10 10 C 1.46500 * 119.99972 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46984 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99914 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99813 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99922 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00202 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00082 * 180.02562 * 14 13 11 17 17 N 1.31412 * 120.00211 * 180.02562 * 16 14 13 18 18 Si 1.86809 * 119.99780 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47023 * 89.99804 * 18 16 14 20 20 H 1.48500 * 109.46762 * 209.99886 * 18 16 14 21 21 H 1.48496 * 109.47119 * 329.99538 * 18 16 14 22 22 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 26 26 H 1.08992 * 113.46685 * 321.94854 * 5 4 2 27 27 H 1.09001 * 113.46148 * 92.38027 * 5 4 2 28 28 H 1.09006 * 114.19295 * 87.73034 * 6 5 4 29 29 H 0.97004 * 119.99779 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.47284 * 300.00302 * 10 9 7 31 31 H 1.09000 * 109.46733 * 60.00083 * 10 9 7 32 32 H 0.96997 * 119.99867 * 0.02562 * 13 11 10 33 33 H 0.96998 * 119.99748 * 180.02562 * 17 16 14 34 34 H 1.08996 * 113.47127 * 267.61738 * 22 4 2 35 35 H 1.09000 * 113.46848 * 38.06571 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1647 -2.8710 0.6990 7 6 3.8766 -4.1043 0.2054 8 8 4.7082 -4.0137 -0.6728 9 7 3.5891 -5.3076 0.7399 10 6 4.2807 -6.5065 0.2597 11 6 3.7810 -7.7110 1.0150 12 8 2.9305 -7.5809 1.8699 13 7 4.2785 -8.9330 0.7398 14 6 3.8243 -10.0288 1.4272 15 1 3.0676 -9.9128 2.1891 16 6 4.3376 -11.2885 1.1439 17 7 3.9019 -12.3389 1.8025 18 14 5.6470 -11.4890 -0.1733 19 1 6.9920 -11.3521 0.4409 20 1 5.5213 -12.8313 -0.7958 21 1 5.4683 -10.4430 -1.2121 22 6 3.5942 -1.5740 -0.0002 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 -0.8900 -0.5138 25 1 -0.3633 0.8900 -0.5138 26 1 0.9614 -2.8244 0.6275 27 1 1.7565 -3.0286 -0.9918 28 1 3.1274 -2.8012 1.7861 29 1 2.9242 -5.3799 1.4425 30 1 4.0847 -6.6374 -0.8045 31 1 5.3531 -6.3963 0.4207 32 1 4.9584 -9.0371 0.0558 33 1 4.2605 -13.2183 1.6049 34 1 4.0003 -1.7333 -0.9991 35 1 4.2288 -0.9380 0.6169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328647864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:09 Heat of formation + Delta-G solvation = -94.309864 kcal Electronic energy + Delta-G solvation = -19689.658701 eV Core-core repulsion = 16302.180522 eV Total energy + Delta-G solvation = -3387.478179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97150 -40.67188 -39.89578 -38.51157 -36.26797 -35.30779 -33.81219 -32.30622 -30.30963 -28.96142 -26.99955 -26.40758 -24.22010 -21.44443 -21.27246 -20.46634 -20.01205 -18.87055 -18.00089 -17.46309 -17.10979 -16.92909 -16.70679 -16.51515 -16.18231 -15.70902 -15.30450 -14.96343 -14.47118 -14.14741 -14.12906 -13.97124 -13.74382 -13.53903 -13.35874 -13.23487 -12.96257 -12.93616 -12.42681 -11.99318 -11.85973 -11.55841 -11.26627 -10.87279 -10.62114 -10.31568 -10.17193 -9.87560 -8.43822 -6.05582 1.32384 1.35624 1.45118 1.46915 1.51355 1.65238 1.82918 2.12582 2.22083 2.91474 3.12277 3.13922 3.48566 3.74210 3.90605 4.05535 4.12584 4.31200 4.44842 4.45999 4.47792 4.50095 4.59916 4.63511 4.72344 4.98903 5.07458 5.26240 5.50353 5.90755 6.47930 6.51631 6.62206 6.81039 7.01968 7.13148 7.32521 7.80931 8.72544 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.048317 B = 0.003077 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.365790 B = 9098.815216 C = 9469.333254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.533 3.467 3 O -0.602 6.602 4 N -0.651 5.651 5 C 0.125 3.875 6 C -0.140 4.140 7 C 0.533 3.467 8 O -0.573 6.573 9 N -0.702 5.702 10 C 0.116 3.884 11 C 0.446 3.554 12 O -0.613 6.613 13 N -0.580 5.580 14 C -0.329 4.329 15 H 0.065 0.935 16 C -0.009 4.009 17 N -0.927 5.927 18 Si 0.958 3.042 19 H -0.258 1.258 20 H -0.276 1.276 21 H -0.231 1.231 22 C 0.116 3.884 23 H 0.113 0.887 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.417 0.583 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.392 0.608 33 H 0.280 0.720 34 H 0.091 0.909 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 17.722 -6.229 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.326 3.674 3 O -0.484 6.484 4 N -0.386 5.386 5 C 0.002 3.998 6 C -0.162 4.162 7 C 0.320 3.680 8 O -0.452 6.452 9 N -0.356 5.356 10 C -0.012 4.012 11 C 0.233 3.767 12 O -0.498 6.498 13 N -0.220 5.220 14 C -0.459 4.459 15 H 0.083 0.917 16 C -0.209 4.209 17 N -0.567 5.567 18 Si 0.778 3.222 19 H -0.183 1.183 20 H -0.201 1.201 21 H -0.154 1.154 22 C -0.007 4.007 23 H 0.132 0.868 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.117 0.883 28 H 0.169 0.831 29 H 0.256 0.744 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.227 0.773 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.072 18.383 -6.241 19.655 hybrid contribution 0.568 -0.854 -0.104 1.031 sum -2.504 17.529 -6.345 18.810 Atomic orbital electron populations 1.21872 0.87224 1.06150 1.06454 1.21287 0.91868 0.80455 0.73781 1.90710 1.72240 1.32223 1.53196 1.49738 1.09624 1.06369 1.72851 1.23011 0.97063 0.77615 1.02101 1.23023 0.98092 0.91120 1.03931 1.20387 0.82183 0.84170 0.81302 1.90715 1.35360 1.86673 1.32481 1.45718 1.43145 1.05475 1.41279 1.20909 0.98459 0.82711 0.99098 1.20548 0.84977 0.84856 0.86297 1.90533 1.36231 1.85740 1.37343 1.41953 1.38044 1.06167 1.35840 1.19027 1.22548 0.85663 1.18616 0.91725 1.26057 1.00428 0.94001 1.00378 1.69781 1.44237 1.00047 1.42637 0.85459 0.78383 0.79677 0.78684 1.18280 1.20096 1.15384 1.22838 0.84614 0.91768 1.01484 0.86830 0.87870 0.88499 0.85768 0.88264 0.83053 0.74425 0.87552 0.87812 0.77259 0.90999 0.89122 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.18 71.24 0.73 -0.87 16 2 C 0.53 10.87 8.19 87.66 0.72 11.59 16 3 O -0.60 -18.51 17.88 -3.02 -0.05 -18.56 16 4 N -0.65 -11.32 3.69 -858.83 -3.17 -14.49 16 5 C 0.12 1.44 7.81 83.09 0.65 2.09 16 6 C -0.14 -2.11 4.48 -11.30 -0.05 -2.16 16 7 C 0.53 11.77 7.40 87.66 0.65 12.42 16 8 O -0.57 -16.46 15.95 -3.03 -0.05 -16.51 16 9 N -0.70 -16.97 5.53 -466.79 -2.58 -19.56 16 10 C 0.12 3.25 6.15 85.63 0.53 3.78 16 11 C 0.45 17.69 7.85 87.66 0.69 18.38 16 12 O -0.61 -29.00 15.24 -3.06 -0.05 -29.05 16 13 N -0.58 -25.02 5.09 -306.99 -1.56 -26.59 16 14 C -0.33 -17.95 10.16 84.04 0.85 -17.09 16 15 H 0.06 4.17 7.39 -2.91 -0.02 4.15 16 16 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 17 N -0.93 -53.23 13.96 21.66 0.30 -52.93 16 18 Si 0.96 36.73 27.74 68.60 1.90 38.63 16 19 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 22 C 0.12 2.18 7.97 83.18 0.66 2.85 16 23 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 0.58 7.94 -2.39 -0.02 0.56 16 25 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 28 H 0.15 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.42 9.91 7.44 -92.71 -0.69 9.22 16 30 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.39 14.09 5.76 -92.71 -0.53 13.56 16 33 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.09 1.91 7.45 -2.39 -0.02 1.90 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -78.67 310.87 0.49 -78.18 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.15 Total: 29.89 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 5.89 Total: 30.98 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -7.01 Total: -113.56 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -0.15 Total: -64.12 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 1.90 Total: 38.63 kcal Total: -78.67 0.49 -78.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328647864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.127 kcal (2) G-P(sol) polarization free energy of solvation -78.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds