Wall clock time and date at job start Mon Mar 30 2020 00:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46932 * 2 1 4 4 C 1.50700 * 109.46889 * 119.99613 * 2 1 3 5 5 H 1.07998 * 120.00158 * 119.99972 * 4 2 1 6 6 C 1.37879 * 120.00190 * 300.00220 * 4 2 1 7 7 N 1.31513 * 119.99658 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47087 * 90.00315 * 8 6 4 10 10 H 1.48499 * 109.47131 * 209.99621 * 8 6 4 11 11 H 1.48495 * 109.47293 * 329.99912 * 8 6 4 12 12 C 1.50693 * 109.47422 * 239.99490 * 2 1 3 13 13 O 1.21277 * 120.00471 * 240.00000 * 12 2 1 14 14 N 1.34778 * 119.99563 * 60.00114 * 12 2 1 15 15 N 1.40105 * 119.99769 * 179.97438 * 14 12 2 16 16 C 1.34778 * 119.99769 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00237 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99515 * 179.97438 * 16 15 14 19 19 H 1.09000 * 110.21801 * 41.93386 * 18 16 15 20 20 C 1.54479 * 110.24823 * 279.99732 * 18 16 15 21 21 C 1.54623 * 101.76734 * 266.33379 * 20 18 16 22 22 C 1.51282 * 104.31101 * 335.13584 * 21 20 18 23 23 O 1.21286 * 124.94199 * 196.27917 * 22 21 20 24 24 N 1.34735 * 109.93792 * 16.31290 * 22 21 20 25 25 H 1.09010 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47665 * 300.00031 * 1 2 3 27 27 H 1.09003 * 109.47139 * 60.00198 * 1 2 3 28 28 H 0.97011 * 119.99728 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00525 * 359.97438 * 14 12 2 30 30 H 0.97004 * 120.00033 * 0.02562 * 15 14 12 31 31 H 1.08994 * 110.96846 * 148.20816 * 20 18 16 32 32 H 1.09005 * 110.99674 * 24.46498 * 20 18 16 33 33 H 1.09002 * 110.48860 * 93.88058 * 21 20 18 34 34 H 1.08998 * 110.48497 * 216.38951 * 21 20 18 35 35 H 0.97003 * 124.30433 * 180.38606 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3211 -1.1202 4.0081 9 1 3.6294 -0.5457 4.4126 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7122 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6965 -1.1190 14 7 1.7068 -0.2500 -2.4544 15 7 2.1743 -0.9102 -3.5983 16 6 1.8483 -0.4501 -4.8225 17 8 1.1506 0.5357 -4.9338 18 6 2.3516 -1.1600 -6.0529 19 1 2.2791 -2.2395 -5.9211 20 6 3.8134 -0.7539 -6.3439 21 6 3.6241 0.4136 -7.3399 22 6 2.2758 0.1498 -7.9733 23 8 1.8764 0.6644 -8.9964 24 7 1.5863 -0.7397 -7.2326 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7093 1.1620 3.4844 29 1 1.1488 0.5384 -2.5436 30 1 2.7320 -1.6989 -3.5093 31 1 4.3619 -1.5752 -6.8052 32 1 4.3128 -0.4152 -5.4362 33 1 3.6178 1.3676 -6.8127 34 1 4.4096 0.4016 -8.0955 35 1 0.6978 -1.0614 -7.4516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329172670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:43 Heat of formation + Delta-G solvation = -78.115534 kcal Electronic energy + Delta-G solvation = -20293.515710 eV Core-core repulsion = 16906.739770 eV Total energy + Delta-G solvation = -3386.775940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12799 -39.59596 -38.44047 -36.40551 -35.03290 -33.91797 -31.85850 -31.47036 -30.11746 -27.98303 -25.25438 -23.63628 -22.63812 -21.25022 -20.84877 -19.96552 -18.02486 -17.70349 -17.36199 -16.26547 -15.93335 -15.50364 -15.41910 -15.06113 -14.54675 -14.21059 -14.07061 -13.92577 -13.59918 -13.24261 -13.07831 -12.67858 -11.97999 -11.74908 -11.68845 -11.12443 -11.05239 -10.82580 -10.80519 -10.56824 -10.37610 -10.17111 -10.08739 -9.47587 -9.11811 -8.94391 -8.47546 -8.06448 -6.13903 -4.18674 1.92862 2.24155 2.40811 3.01975 3.27596 3.34030 3.40116 3.42731 3.91551 3.98154 4.04754 4.36192 4.40019 4.69645 4.78032 4.95045 5.19682 5.29044 5.37984 5.49008 5.83383 6.36542 6.49905 6.65928 6.68460 6.74579 6.91580 6.94555 7.32563 7.63669 7.77887 7.93518 7.97257 8.04032 8.20281 8.89098 8.94920 9.47355 10.93568 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.049771 B = 0.003514 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.445612 B = 7966.575454 C = 8244.371241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.506 4.506 5 H 0.076 0.924 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.523 3.477 13 O -0.543 6.543 14 N -0.540 5.540 15 N -0.517 5.517 16 C 0.490 3.510 17 O -0.533 6.533 18 C 0.125 3.875 19 H 0.119 0.881 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.530 3.470 23 O -0.530 6.530 24 N -0.708 5.708 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.015 0.985 28 H 0.263 0.737 29 H 0.428 0.572 30 H 0.429 0.571 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -4.006 -15.657 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.544 4.544 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.417 6.417 14 N -0.292 5.292 15 N -0.262 5.262 16 C 0.273 3.727 17 O -0.408 6.408 18 C 0.013 3.987 19 H 0.137 0.863 20 C -0.160 4.160 21 C -0.198 4.198 22 C 0.317 3.683 23 O -0.405 6.405 24 N -0.364 5.364 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.270 0.730 30 H 0.270 0.730 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.100 -3.588 -16.027 16.927 hybrid contribution -0.221 -0.570 0.911 1.097 sum 3.879 -4.157 -15.116 16.150 Atomic orbital electron populations 1.21814 0.96054 1.00183 1.01447 1.18908 0.94456 0.97052 0.87605 0.92278 1.21082 1.31624 1.13115 0.88625 0.90569 1.24954 0.94941 0.95041 0.99189 1.69868 1.36616 1.22879 1.23855 0.86392 0.78482 0.80163 0.81827 1.20575 1.21216 1.19702 1.22646 0.78742 0.84816 0.82456 1.90549 1.38334 1.26894 1.85949 1.45900 1.55175 1.31410 0.96743 1.44820 1.52276 1.30443 0.98682 1.21160 0.82035 0.86036 0.83483 1.90764 1.37947 1.25996 1.86054 1.21398 0.93044 1.00287 0.83947 0.86314 1.22652 0.92910 0.99194 1.01264 1.22377 0.96408 1.00876 1.00187 1.20885 0.87398 0.77112 0.82953 1.90766 1.74498 1.51288 1.23998 1.45928 1.20588 1.46347 1.23518 0.94689 0.88424 0.96622 0.92724 0.73010 0.72987 0.88102 0.88252 0.87272 0.87400 0.74556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.87 37.16 0.33 -2.67 16 2 C 0.04 0.99 2.64 -92.93 -0.25 0.75 16 3 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 4 C -0.51 -13.55 8.37 -34.44 -0.29 -13.84 16 5 H 0.08 2.13 6.75 -52.49 -0.35 1.78 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.52 10.91 7.26 -10.99 -0.08 10.83 16 13 O -0.54 -12.53 15.30 5.56 0.09 -12.44 16 14 N -0.54 -9.08 6.15 31.22 0.19 -8.88 16 15 N -0.52 -6.78 6.26 31.22 0.20 -6.58 16 16 C 0.49 5.87 7.13 -10.98 -0.08 5.80 16 17 O -0.53 -8.53 16.40 5.56 0.09 -8.44 16 18 C 0.12 0.95 3.93 -68.16 -0.27 0.68 16 19 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.12 -0.69 6.69 -25.10 -0.17 -0.86 16 21 C -0.16 -1.24 6.84 -26.74 -0.18 -1.42 16 22 C 0.53 6.05 8.46 -10.72 -0.09 5.96 16 23 O -0.53 -8.25 18.03 5.55 0.10 -8.15 16 24 N -0.71 -6.59 5.47 -53.80 -0.29 -6.88 16 25 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.43 7.03 7.42 -182.60 -1.35 5.67 16 30 H 0.43 4.89 8.00 -182.59 -1.46 3.43 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.55 7.89 -51.93 -0.41 0.14 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.42 3.50 8.96 -40.82 -0.37 3.14 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -34.20 305.09 -6.92 -41.12 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.32 Total: 6.57 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.17 Total: 6.72 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.72 Total: -45.84 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: 0.28 Total: -29.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.20 -6.92 -41.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329172670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.998 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds