Wall clock time and date at job start Mon Mar 30 2020 00:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46932 * 2 1 4 4 C 1.50700 * 109.46889 * 119.99613 * 2 1 3 5 5 H 1.07998 * 120.00158 * 119.99972 * 4 2 1 6 6 C 1.37879 * 120.00190 * 300.00220 * 4 2 1 7 7 N 1.31513 * 119.99658 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47087 * 90.00315 * 8 6 4 10 10 H 1.48499 * 109.47131 * 209.99621 * 8 6 4 11 11 H 1.48495 * 109.47293 * 329.99912 * 8 6 4 12 12 C 1.50693 * 109.47422 * 239.99490 * 2 1 3 13 13 O 1.21277 * 120.00471 * 240.00000 * 12 2 1 14 14 N 1.34778 * 119.99563 * 60.00114 * 12 2 1 15 15 N 1.40105 * 119.99769 * 179.97438 * 14 12 2 16 16 C 1.34778 * 119.99769 * 179.97438 * 15 14 12 17 17 O 1.21276 * 120.00237 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99515 * 179.97438 * 16 15 14 19 19 H 1.09000 * 110.21801 * 41.93386 * 18 16 15 20 20 C 1.54479 * 110.24823 * 279.99732 * 18 16 15 21 21 C 1.54623 * 101.76734 * 266.33379 * 20 18 16 22 22 C 1.51282 * 104.31101 * 335.13584 * 21 20 18 23 23 O 1.21286 * 124.94199 * 196.27917 * 22 21 20 24 24 N 1.34735 * 109.93792 * 16.31290 * 22 21 20 25 25 H 1.09010 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47665 * 300.00031 * 1 2 3 27 27 H 1.09003 * 109.47139 * 60.00198 * 1 2 3 28 28 H 0.97011 * 119.99728 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00525 * 359.97438 * 14 12 2 30 30 H 0.97004 * 120.00033 * 0.02562 * 15 14 12 31 31 H 1.08994 * 110.96846 * 148.20816 * 20 18 16 32 32 H 1.09005 * 110.99674 * 24.46498 * 20 18 16 33 33 H 1.09002 * 110.48860 * 93.88058 * 21 20 18 34 34 H 1.08998 * 110.48497 * 216.38951 * 21 20 18 35 35 H 0.97003 * 124.30433 * 180.38606 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3211 -1.1202 4.0081 9 1 3.6294 -0.5457 4.4126 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7122 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6965 -1.1190 14 7 1.7068 -0.2500 -2.4544 15 7 2.1743 -0.9102 -3.5983 16 6 1.8483 -0.4501 -4.8225 17 8 1.1506 0.5357 -4.9338 18 6 2.3516 -1.1600 -6.0529 19 1 2.2791 -2.2395 -5.9211 20 6 3.8134 -0.7539 -6.3439 21 6 3.6241 0.4136 -7.3399 22 6 2.2758 0.1498 -7.9733 23 8 1.8764 0.6644 -8.9964 24 7 1.5863 -0.7397 -7.2326 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7093 1.1620 3.4844 29 1 1.1488 0.5384 -2.5436 30 1 2.7320 -1.6989 -3.5093 31 1 4.3619 -1.5752 -6.8052 32 1 4.3128 -0.4152 -5.4362 33 1 3.6178 1.3676 -6.8127 34 1 4.4096 0.4016 -8.0955 35 1 0.6978 -1.0614 -7.4516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329172670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:43 Heat of formation + Delta-G solvation = -106.381304 kcal Electronic energy + Delta-G solvation = -20294.741406 eV Core-core repulsion = 16906.739770 eV Total energy + Delta-G solvation = -3388.001636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02620 -40.88832 -39.74874 -37.34206 -36.36190 -35.80476 -33.27064 -32.33008 -31.63408 -28.88385 -27.21330 -24.89488 -23.82655 -22.34684 -21.72759 -21.25303 -19.12483 -18.83460 -18.46518 -18.06925 -17.30118 -16.77463 -16.52410 -16.20939 -16.07315 -15.60902 -15.18223 -14.86945 -14.74909 -14.51416 -14.31847 -13.65511 -13.56148 -12.98208 -12.76653 -12.63785 -12.57744 -12.39530 -12.29296 -12.16300 -12.02636 -11.54812 -11.07874 -11.06529 -10.79826 -10.47513 -10.20766 -9.38518 -8.15304 -6.26578 0.78377 1.22651 1.44553 1.46077 1.51327 1.57381 1.82648 2.26913 2.44964 2.98941 3.15589 3.27946 3.44926 3.64568 3.89189 4.18739 4.23202 4.43057 4.70862 4.79317 4.88984 4.93277 4.95432 5.03544 5.42949 5.59691 5.61985 5.73842 5.75781 5.88146 5.97724 6.18184 6.58746 6.82764 6.88593 7.11958 7.38022 7.47322 8.90668 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.049771 B = 0.003514 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.445612 B = 7966.575454 C = 8244.371241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.035 3.965 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.530 3.470 13 O -0.569 6.569 14 N -0.532 5.532 15 N -0.509 5.509 16 C 0.494 3.506 17 O -0.574 6.574 18 C 0.131 3.869 19 H 0.165 0.835 20 C -0.111 4.111 21 C -0.157 4.157 22 C 0.518 3.482 23 O -0.582 6.582 24 N -0.704 5.704 25 H 0.029 0.971 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.265 0.735 29 H 0.431 0.569 30 H 0.439 0.561 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -5.299 -16.273 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.445 6.445 14 N -0.281 5.281 15 N -0.257 5.257 16 C 0.280 3.720 17 O -0.451 6.451 18 C 0.020 3.980 19 H 0.183 0.817 20 C -0.149 4.149 21 C -0.197 4.197 22 C 0.307 3.693 23 O -0.462 6.462 24 N -0.358 5.358 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.283 0.717 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.109 -4.890 -16.645 18.086 hybrid contribution -0.569 -0.128 1.025 1.179 sum 4.540 -5.018 -15.620 17.023 Atomic orbital electron populations 1.21630 0.95088 0.99863 1.01729 1.18792 0.95266 0.96306 0.88421 0.93469 1.21259 1.31882 1.12996 0.90460 0.92364 1.25620 0.95097 0.95700 1.01583 1.69960 1.37064 1.23616 1.24453 0.85537 0.78214 0.78930 0.78867 1.20042 1.20462 1.19894 1.21854 0.78684 0.84313 0.83188 1.90529 1.39572 1.27887 1.86535 1.45379 1.54180 1.31134 0.97449 1.44992 1.52605 1.30648 0.97473 1.22139 0.80671 0.85320 0.83884 1.90761 1.39804 1.27981 1.86552 1.21728 0.93622 1.01978 0.80683 0.81731 1.22795 0.91610 0.99414 1.01083 1.22435 0.94843 1.01433 1.01017 1.21563 0.88778 0.76563 0.82422 1.90731 1.75890 1.53146 1.26393 1.46045 1.20830 1.45510 1.23406 0.95171 0.90794 0.93596 0.92568 0.72649 0.71729 0.84227 0.87633 0.88215 0.85328 0.74341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.87 71.98 0.64 -4.83 16 2 C 0.03 1.64 2.64 -12.29 -0.03 1.61 16 3 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 4 C -0.53 -28.55 8.37 25.60 0.21 -28.34 16 5 H 0.06 3.31 6.75 -2.91 -0.02 3.29 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -49.46 11.32 21.45 0.24 -49.22 16 8 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.53 21.83 7.26 87.65 0.64 22.46 16 13 O -0.57 -25.87 15.30 -3.02 -0.05 -25.92 16 14 N -0.53 -17.19 6.15 -173.54 -1.07 -18.25 16 15 N -0.51 -12.16 6.26 -173.53 -1.09 -13.24 16 16 C 0.49 10.66 7.13 87.66 0.62 11.29 16 17 O -0.57 -17.65 16.40 -3.02 -0.05 -17.70 16 18 C 0.13 1.51 3.93 44.70 0.18 1.68 16 19 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 20 C -0.11 -0.80 6.69 31.65 0.21 -0.59 16 21 C -0.16 -2.09 6.84 30.59 0.21 -1.88 16 22 C 0.52 11.22 8.46 87.85 0.74 11.96 16 23 O -0.58 -18.25 18.03 -3.05 -0.05 -18.30 16 24 N -0.70 -11.63 5.47 -442.52 -2.42 -14.05 16 25 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 27 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 28 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 29 H 0.43 13.68 7.42 -213.32 -1.58 12.09 16 30 H 0.44 8.72 8.00 -213.31 -1.71 7.01 16 31 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.11 0.74 7.89 -2.38 -0.02 0.72 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 6.39 8.96 -92.71 -0.83 5.56 16 Total: -1.00 -75.95 305.09 -1.54 -77.49 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -2.96 Total: 19.58 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 3.87 Total: 14.85 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -4.33 Total: -94.77 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -0.15 Total: -61.92 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.95 -1.54 -77.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329172670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.894 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds