Wall clock time and date at job start Mon Mar 30 2020 00:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47272 * 2 1 4 4 C 1.50706 * 109.46990 * 120.00678 * 2 1 3 5 5 H 1.08000 * 119.99670 * 119.99457 * 4 2 1 6 6 C 1.37870 * 119.99639 * 299.99579 * 4 2 1 7 7 N 1.31514 * 120.00394 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99523 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47186 * 59.99884 * 8 6 4 10 10 H 1.48500 * 109.46835 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46981 * 299.99416 * 8 6 4 12 12 C 1.50700 * 109.46563 * 240.00072 * 2 1 3 13 13 O 1.21287 * 120.00366 * 240.00072 * 12 2 1 14 14 N 1.34780 * 119.99918 * 60.01028 * 12 2 1 15 15 N 1.40098 * 119.99854 * 180.02562 * 14 12 2 16 16 C 1.34786 * 119.99849 * 179.97438 * 15 14 12 17 17 O 1.21279 * 120.00011 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99707 * 179.97438 * 16 15 14 19 19 H 1.09002 * 110.29110 * 320.51581 * 18 16 15 20 20 C 1.54484 * 110.24907 * 82.49952 * 18 16 15 21 21 C 1.54624 * 101.76286 * 93.57871 * 20 18 16 22 22 C 1.51281 * 104.20087 * 24.80203 * 21 20 18 23 23 O 1.21279 * 124.94630 * 164.01180 * 22 21 20 24 24 N 1.34424 * 110.11017 * 343.74403 * 22 21 20 25 25 H 1.09000 * 109.47266 * 59.99266 * 1 2 3 26 26 H 1.09001 * 109.47626 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46811 * 299.99663 * 1 2 3 28 28 H 0.96996 * 119.99994 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00330 * 359.97438 * 14 12 2 30 30 H 0.97001 * 120.00491 * 359.97438 * 15 14 12 31 31 H 1.09000 * 110.96838 * 211.70493 * 20 18 16 32 32 H 1.09000 * 110.96325 * 335.42536 * 20 18 16 33 33 H 1.09000 * 110.48926 * 266.12016 * 21 20 18 34 34 H 1.09001 * 110.48194 * 143.48372 * 21 20 18 35 35 H 0.97006 * 124.34522 * 179.61209 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9437 0.8300 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.8075 -1.1195 4.0075 10 1 1.8270 -0.4204 5.2204 11 1 1.8279 -2.5201 4.0079 12 6 2.0322 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 7 2.1731 -0.9105 -3.5985 16 6 1.8471 -0.4502 -4.8227 17 8 1.1497 0.5358 -4.9339 18 6 2.3494 -1.1606 -6.0531 19 1 3.3782 -1.4893 -5.9064 20 6 1.4436 -2.3686 -6.3802 21 6 0.4454 -1.7508 -7.3865 22 6 1.1970 -0.5823 -7.9850 23 8 0.8829 -0.0022 -9.0027 24 7 2.2604 -0.2769 -7.2215 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7097 1.1616 3.4844 29 1 1.1489 0.5387 -2.5436 30 1 2.7306 -1.6993 -3.5097 31 1 2.0169 -3.1721 -6.8426 32 1 0.9290 -2.7233 -5.4871 33 1 -0.4506 -1.4045 -6.8713 34 1 0.1863 -2.4742 -8.1597 35 1 2.8882 0.4361 -7.4176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329172672.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:45 Heat of formation + Delta-G solvation = -77.873973 kcal Electronic energy + Delta-G solvation = -20303.845761 eV Core-core repulsion = 16917.080296 eV Total energy + Delta-G solvation = -3386.765465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14911 -39.60279 -38.44019 -36.40157 -35.03071 -33.91744 -31.85888 -31.48804 -30.11895 -27.98318 -25.25388 -23.63906 -22.63150 -21.25682 -20.85668 -19.96799 -18.03671 -17.70426 -17.35044 -16.28645 -15.93072 -15.51225 -15.33675 -15.12404 -14.54710 -14.26758 -13.99012 -13.91514 -13.62319 -13.25557 -13.06903 -12.67135 -11.98277 -11.73183 -11.69986 -11.12442 -11.04789 -10.82965 -10.80183 -10.57440 -10.38502 -10.16611 -10.08812 -9.47924 -9.12749 -8.94498 -8.47127 -8.06545 -6.13640 -4.18618 1.92833 2.23573 2.41975 3.02501 3.29898 3.33471 3.38119 3.42736 3.91699 3.98414 4.04506 4.36179 4.40135 4.69760 4.77697 4.95163 5.19782 5.29165 5.38224 5.49618 5.83321 6.36226 6.49897 6.66892 6.68496 6.74509 6.91427 6.94416 7.32618 7.63739 7.77799 7.93962 7.97289 8.03923 8.20302 8.88770 8.94818 9.47390 10.93796 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050774 B = 0.003507 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.333171 B = 7982.740829 C = 8206.674516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.507 4.507 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.544 6.544 14 N -0.540 5.540 15 N -0.517 5.517 16 C 0.490 3.510 17 O -0.533 6.533 18 C 0.124 3.876 19 H 0.119 0.881 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.529 3.471 23 O -0.531 6.531 24 N -0.707 5.707 25 H 0.015 0.985 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.264 0.736 29 H 0.428 0.572 30 H 0.429 0.571 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -5.709 -15.681 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.545 4.545 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.417 6.417 14 N -0.292 5.292 15 N -0.262 5.262 16 C 0.273 3.727 17 O -0.407 6.407 18 C 0.013 3.987 19 H 0.136 0.864 20 C -0.160 4.160 21 C -0.198 4.198 22 C 0.316 3.684 23 O -0.407 6.407 24 N -0.363 5.363 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.270 0.730 30 H 0.270 0.730 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.441 -5.387 -16.047 16.988 hybrid contribution 0.629 -0.013 0.918 1.113 sum 2.069 -5.401 -15.129 16.197 Atomic orbital electron populations 1.21813 0.96033 1.00181 1.01449 1.18906 0.94466 0.97039 0.87580 0.92300 1.21042 1.31723 1.13125 0.88643 0.90622 1.24948 0.94943 0.95019 0.99172 1.69853 1.36601 1.22815 1.23967 0.86446 0.79274 0.79665 0.81410 1.20120 1.21297 1.20120 1.22654 0.78730 0.84819 0.82460 1.90551 1.38314 1.26920 1.85957 1.45898 1.55245 1.31340 0.96743 1.44826 1.52320 1.30377 0.98684 1.21152 0.82137 0.85948 0.83472 1.90765 1.37835 1.26088 1.86056 1.21410 1.02584 0.90568 0.84161 0.86351 1.22648 0.96776 0.95530 1.01037 1.22377 0.99798 0.97325 1.00288 1.20816 0.80158 0.84641 0.82766 1.90764 1.68839 1.56581 1.24503 1.45867 1.30111 1.36842 1.23462 0.96625 0.94673 0.88428 0.92658 0.73008 0.72987 0.88105 0.88268 0.87241 0.87404 0.74539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.04 1.00 2.64 -92.92 -0.25 0.76 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.51 -13.58 8.37 -34.44 -0.29 -13.87 16 5 H 0.08 2.12 6.75 -52.49 -0.35 1.76 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.13 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 C 0.52 10.92 7.26 -10.98 -0.08 10.84 16 13 O -0.54 -12.53 15.30 5.55 0.08 -12.45 16 14 N -0.54 -9.08 6.15 31.22 0.19 -8.89 16 15 N -0.52 -6.78 6.26 31.22 0.20 -6.58 16 16 C 0.49 5.87 7.11 -10.98 -0.08 5.79 16 17 O -0.53 -8.52 16.42 5.56 0.09 -8.43 16 18 C 0.12 0.94 3.93 -68.16 -0.27 0.67 16 19 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.12 -0.70 6.69 -25.10 -0.17 -0.87 16 21 C -0.16 -1.24 6.85 -26.74 -0.18 -1.42 16 22 C 0.53 6.06 8.43 -10.86 -0.09 5.97 16 23 O -0.53 -8.29 18.03 5.56 0.10 -8.19 16 24 N -0.71 -6.58 5.47 -53.88 -0.29 -6.87 16 25 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.43 7.03 7.42 -182.60 -1.35 5.67 16 30 H 0.43 4.90 8.00 -182.60 -1.46 3.44 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.56 7.89 -51.93 -0.41 0.15 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.42 3.49 8.96 -40.82 -0.37 3.12 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -34.19 305.08 -6.92 -41.11 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.32 Total: 6.60 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.17 Total: 6.73 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.72 Total: -45.85 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: 0.28 Total: -29.07 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.19 -6.92 -41.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329172672.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.765 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds