Wall clock time and date at job start Mon Mar 30 2020 00:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47272 * 2 1 4 4 C 1.50706 * 109.46990 * 120.00678 * 2 1 3 5 5 H 1.08000 * 119.99670 * 119.99457 * 4 2 1 6 6 C 1.37870 * 119.99639 * 299.99579 * 4 2 1 7 7 N 1.31514 * 120.00394 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99523 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47186 * 59.99884 * 8 6 4 10 10 H 1.48500 * 109.46835 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46981 * 299.99416 * 8 6 4 12 12 C 1.50700 * 109.46563 * 240.00072 * 2 1 3 13 13 O 1.21287 * 120.00366 * 240.00072 * 12 2 1 14 14 N 1.34780 * 119.99918 * 60.01028 * 12 2 1 15 15 N 1.40098 * 119.99854 * 180.02562 * 14 12 2 16 16 C 1.34786 * 119.99849 * 179.97438 * 15 14 12 17 17 O 1.21279 * 120.00011 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99707 * 179.97438 * 16 15 14 19 19 H 1.09002 * 110.29110 * 320.51581 * 18 16 15 20 20 C 1.54484 * 110.24907 * 82.49952 * 18 16 15 21 21 C 1.54624 * 101.76286 * 93.57871 * 20 18 16 22 22 C 1.51281 * 104.20087 * 24.80203 * 21 20 18 23 23 O 1.21279 * 124.94630 * 164.01180 * 22 21 20 24 24 N 1.34424 * 110.11017 * 343.74403 * 22 21 20 25 25 H 1.09000 * 109.47266 * 59.99266 * 1 2 3 26 26 H 1.09001 * 109.47626 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46811 * 299.99663 * 1 2 3 28 28 H 0.96996 * 119.99994 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00330 * 359.97438 * 14 12 2 30 30 H 0.97001 * 120.00491 * 359.97438 * 15 14 12 31 31 H 1.09000 * 110.96838 * 211.70493 * 20 18 16 32 32 H 1.09000 * 110.96325 * 335.42536 * 20 18 16 33 33 H 1.09000 * 110.48926 * 266.12016 * 21 20 18 34 34 H 1.09001 * 110.48194 * 143.48372 * 21 20 18 35 35 H 0.97006 * 124.34522 * 179.61209 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9437 0.8300 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.8075 -1.1195 4.0075 10 1 1.8270 -0.4204 5.2204 11 1 1.8279 -2.5201 4.0079 12 6 2.0322 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 7 2.1731 -0.9105 -3.5985 16 6 1.8471 -0.4502 -4.8227 17 8 1.1497 0.5358 -4.9339 18 6 2.3494 -1.1606 -6.0531 19 1 3.3782 -1.4893 -5.9064 20 6 1.4436 -2.3686 -6.3802 21 6 0.4454 -1.7508 -7.3865 22 6 1.1970 -0.5823 -7.9850 23 8 0.8829 -0.0022 -9.0027 24 7 2.2604 -0.2769 -7.2215 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7097 1.1616 3.4844 29 1 1.1489 0.5387 -2.5436 30 1 2.7306 -1.6993 -3.5097 31 1 2.0169 -3.1721 -6.8426 32 1 0.9290 -2.7233 -5.4871 33 1 -0.4506 -1.4045 -6.8713 34 1 0.1863 -2.4742 -8.1597 35 1 2.8882 0.4361 -7.4176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329172672.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:45 Heat of formation + Delta-G solvation = -106.143170 kcal Electronic energy + Delta-G solvation = -20305.071605 eV Core-core repulsion = 16917.080296 eV Total energy + Delta-G solvation = -3387.991309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04406 -40.89718 -39.75065 -37.34089 -36.35953 -35.80359 -33.26890 -32.34495 -31.64019 -28.88425 -27.21020 -24.89685 -23.81986 -22.35229 -21.73499 -21.25721 -19.13796 -18.83350 -18.45148 -18.07487 -17.32853 -16.74514 -16.49547 -16.20848 -16.11777 -15.62622 -15.13293 -14.90285 -14.74199 -14.50898 -14.31215 -13.64705 -13.56133 -12.97865 -12.77494 -12.62556 -12.57067 -12.39434 -12.30813 -12.16084 -12.02321 -11.55245 -11.08433 -11.06514 -10.79744 -10.47374 -10.21205 -9.38658 -8.15074 -6.26596 0.78271 1.22160 1.45983 1.46543 1.52136 1.55589 1.82341 2.27731 2.44950 2.98688 3.15700 3.28348 3.44777 3.64361 3.89426 4.18683 4.23038 4.43209 4.71327 4.79395 4.89492 4.93458 4.96035 5.03713 5.43255 5.59580 5.61869 5.73943 5.75541 5.88945 5.97972 6.18313 6.58581 6.82493 6.88390 7.12314 7.37929 7.47225 8.90686 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050774 B = 0.003507 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.333171 B = 7982.740829 C = 8206.674516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.035 3.965 3 H 0.046 0.954 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.530 3.470 13 O -0.569 6.569 14 N -0.532 5.532 15 N -0.509 5.509 16 C 0.494 3.506 17 O -0.574 6.574 18 C 0.130 3.870 19 H 0.165 0.835 20 C -0.111 4.111 21 C -0.157 4.157 22 C 0.518 3.482 23 O -0.583 6.583 24 N -0.703 5.703 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.265 0.735 29 H 0.431 0.569 30 H 0.439 0.561 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -7.271 -16.315 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 H 0.064 0.936 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.320 3.680 13 O -0.445 6.445 14 N -0.281 5.281 15 N -0.257 5.257 16 C 0.280 3.720 17 O -0.451 6.451 18 C 0.019 3.981 19 H 0.182 0.818 20 C -0.149 4.149 21 C -0.197 4.197 22 C 0.306 3.694 23 O -0.463 6.463 24 N -0.357 5.357 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.283 0.717 31 H 0.158 0.842 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.118 -6.950 -16.684 18.198 hybrid contribution 0.417 0.532 1.037 1.238 sum 2.535 -6.418 -15.647 17.101 Atomic orbital electron populations 1.21625 0.94980 0.99927 1.01726 1.18791 0.95351 0.96230 0.88404 0.93604 1.21233 1.31981 1.13034 0.90475 0.92347 1.25616 0.95097 0.95678 1.01573 1.69948 1.37061 1.23561 1.24520 0.85596 0.78709 0.78730 0.78533 1.19974 1.20494 1.19871 1.21861 0.78674 0.84318 0.83191 1.90531 1.39544 1.27916 1.86543 1.45377 1.54249 1.31065 0.97449 1.45000 1.52636 1.30600 0.97476 1.22130 0.80754 0.85252 0.83869 1.90762 1.39623 1.28130 1.86553 1.21741 1.05357 0.90042 0.80926 0.81756 1.22791 0.96036 0.95247 1.00797 1.22434 0.99548 0.96445 1.01238 1.21496 0.80484 0.85162 0.82220 1.90729 1.70193 1.58503 1.26895 1.45983 1.29436 1.36943 1.23323 0.93575 0.95056 0.90827 0.92554 0.72647 0.71732 0.84225 0.87644 0.88208 0.85320 0.74314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.87 71.98 0.64 -4.78 16 2 C 0.03 1.65 2.64 -12.28 -0.03 1.61 16 3 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.53 -28.63 8.37 25.60 0.21 -28.42 16 5 H 0.06 3.31 6.75 -2.91 -0.02 3.29 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -49.51 11.32 21.44 0.24 -49.27 16 8 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.53 21.83 7.26 87.66 0.64 22.47 16 13 O -0.57 -25.88 15.30 -3.05 -0.05 -25.92 16 14 N -0.53 -17.19 6.15 -173.52 -1.07 -18.26 16 15 N -0.51 -12.16 6.26 -173.53 -1.09 -13.25 16 16 C 0.49 10.66 7.11 87.65 0.62 11.28 16 17 O -0.57 -17.63 16.42 -3.03 -0.05 -17.68 16 18 C 0.13 1.50 3.93 44.70 0.18 1.67 16 19 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 20 C -0.11 -0.80 6.69 31.65 0.21 -0.59 16 21 C -0.16 -2.09 6.85 30.59 0.21 -1.88 16 22 C 0.52 11.23 8.43 87.90 0.74 11.97 16 23 O -0.58 -18.34 18.03 -3.02 -0.05 -18.39 16 24 N -0.70 -11.62 5.47 -442.96 -2.42 -14.04 16 25 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 28 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.43 13.68 7.42 -213.33 -1.58 12.10 16 30 H 0.44 8.73 8.00 -213.32 -1.71 7.02 16 31 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.11 0.74 7.89 -2.39 -0.02 0.72 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 6.38 8.96 -92.70 -0.83 5.55 16 Total: -1.00 -75.97 305.08 -1.55 -77.52 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -2.96 Total: 19.67 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 3.87 Total: 14.86 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.33 Total: -94.82 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -0.15 Total: -61.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.97 -1.55 -77.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329172672.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.626 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds