Wall clock time and date at job start Mon Mar 30 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00140 * 12 2 1 14 14 N 1.34774 * 120.00337 * 299.99528 * 12 2 1 15 15 N 1.40105 * 120.00180 * 179.97438 * 14 12 2 16 16 C 1.34776 * 119.99582 * 180.02562 * 15 14 12 17 17 O 1.21277 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99433 * 180.02562 * 16 15 14 19 19 H 1.08991 * 110.22026 * 41.92588 * 18 16 15 20 20 C 1.54480 * 110.24351 * 279.99505 * 18 16 15 21 21 C 1.54624 * 101.76637 * 215.58629 * 20 18 16 22 22 C 1.51287 * 104.19596 * 24.79891 * 21 20 18 23 23 O 1.21280 * 124.94163 * 163.74707 * 22 21 20 24 24 N 1.34420 * 110.11225 * 343.75069 * 22 21 20 25 25 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 27 27 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 28 28 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00043 * 0.02562 * 14 12 2 30 30 H 0.96997 * 119.99772 * 0.02562 * 15 14 12 31 31 H 1.09007 * 110.97194 * 333.71141 * 20 18 16 32 32 H 1.09001 * 110.96764 * 97.46428 * 20 18 16 33 33 H 1.08998 * 110.48919 * 143.47871 * 21 20 18 34 34 H 1.09002 * 110.48835 * 265.99147 * 21 20 18 35 35 H 0.96997 * 124.34910 * 179.57132 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 3.1572 -2.2796 -3.6036 10 1 1.1766 -1.5863 -4.8186 11 1 3.1504 -0.1777 -4.8137 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 7 2.1733 -0.9106 3.5986 16 6 1.8473 -0.4503 4.8226 17 8 1.1498 0.5356 4.9339 18 6 2.3497 -1.1607 6.0531 19 1 3.3920 -1.4507 5.9215 20 6 1.4813 -2.4048 6.3440 21 6 1.4626 -2.4218 7.8901 22 6 1.7146 -0.9819 8.2800 23 8 1.5042 -0.5127 9.3784 24 7 2.2055 -0.2983 7.2318 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1613 -3.4844 29 1 1.1489 0.5386 2.5436 30 1 2.7309 -1.6993 3.5095 31 1 0.4753 -2.2808 5.9430 32 1 1.9482 -3.3073 5.9496 33 1 0.4904 -2.7516 8.2563 34 1 2.2528 -3.0669 8.2741 35 1 2.4347 0.6440 7.2519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329172676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:49 Heat of formation + Delta-G solvation = -79.079296 kcal Electronic energy + Delta-G solvation = -20174.303595 eV Core-core repulsion = 16787.485863 eV Total energy + Delta-G solvation = -3386.817732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10375 -39.68608 -38.51008 -36.46218 -35.07968 -33.92940 -31.86912 -31.51925 -30.16798 -28.06023 -25.26455 -23.50422 -22.63119 -21.31484 -20.86651 -20.03398 -18.02380 -17.85542 -17.16077 -16.32862 -16.18355 -15.46580 -15.32871 -15.20335 -14.53453 -14.34410 -14.00810 -13.95284 -13.52789 -13.28371 -13.08609 -12.70005 -12.39715 -11.76380 -11.58366 -11.15002 -11.07861 -10.84454 -10.77909 -10.46246 -10.39183 -10.21184 -10.08881 -9.51108 -9.11334 -8.98028 -8.48950 -8.09569 -6.14875 -4.19589 1.91075 2.19054 2.32965 3.02324 3.25688 3.33889 3.41020 3.41283 3.79944 3.89912 4.09851 4.35818 4.45393 4.54909 4.76088 4.93350 5.18795 5.24488 5.34611 5.47723 5.81350 6.34887 6.48770 6.66341 6.67427 6.73099 6.87995 6.90949 7.31367 7.62473 7.75794 7.90196 7.96026 8.00066 8.18863 8.88396 8.93160 9.46567 10.92646 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.053225 B = 0.003385 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.943607 B = 8270.248248 C = 8532.682674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.506 4.506 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.523 3.477 13 O -0.543 6.543 14 N -0.540 5.540 15 N -0.515 5.515 16 C 0.497 3.503 17 O -0.534 6.534 18 C 0.124 3.876 19 H 0.112 0.888 20 C -0.124 4.124 21 C -0.154 4.154 22 C 0.524 3.476 23 O -0.531 6.531 24 N -0.707 5.707 25 H 0.034 0.966 26 H 0.015 0.985 27 H 0.097 0.903 28 H 0.262 0.738 29 H 0.428 0.572 30 H 0.430 0.570 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -5.679 15.508 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.544 4.544 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.416 6.416 14 N -0.292 5.292 15 N -0.260 5.260 16 C 0.280 3.720 17 O -0.410 6.410 18 C 0.013 3.987 19 H 0.130 0.870 20 C -0.163 4.163 21 C -0.194 4.194 22 C 0.310 3.690 23 O -0.407 6.407 24 N -0.363 5.363 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.270 0.730 30 H 0.271 0.729 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 1.702 -5.457 15.931 16.925 hybrid contribution 0.398 0.081 -0.977 1.058 sum 2.100 -5.376 14.954 16.029 Atomic orbital electron populations 1.21814 0.96022 1.00201 1.01466 1.18916 0.94474 0.97057 0.87569 0.92271 1.21127 1.31570 1.13102 0.88607 0.90500 1.24958 0.94958 0.95020 0.99204 1.69875 1.36727 1.22849 1.23765 0.86344 0.78673 0.79694 0.82230 1.19509 1.20956 1.20956 1.22667 0.78728 0.84826 0.82429 1.90553 1.38270 1.26897 1.85927 1.45912 1.55286 1.31343 0.96669 1.44761 1.52145 1.30367 0.98683 1.20785 0.82047 0.85773 0.83347 1.90769 1.37977 1.26187 1.86037 1.21445 1.01854 0.91143 0.84236 0.87025 1.22686 1.01455 0.96381 0.95742 1.22378 1.05859 0.95197 0.96007 1.20824 0.75359 0.89129 0.83660 1.90776 1.52453 1.75050 1.22433 1.45927 1.66272 1.13484 1.10663 0.94664 0.96614 0.88408 0.92769 0.72973 0.72903 0.88995 0.87615 0.87410 0.87133 0.74277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.04 0.99 2.64 -92.93 -0.25 0.74 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.51 -13.50 8.37 -34.44 -0.29 -13.79 16 5 H 0.08 2.15 6.75 -52.49 -0.35 1.80 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.52 10.86 7.26 -10.99 -0.08 10.78 16 13 O -0.54 -12.47 15.30 5.56 0.09 -12.39 16 14 N -0.54 -9.00 6.15 31.22 0.19 -8.81 16 15 N -0.51 -6.71 6.26 31.22 0.20 -6.51 16 16 C 0.50 5.90 7.15 -10.98 -0.08 5.82 16 17 O -0.53 -8.35 16.38 5.56 0.09 -8.26 16 18 C 0.12 0.96 3.93 -68.16 -0.27 0.69 16 19 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 20 C -0.12 -0.72 6.67 -25.10 -0.17 -0.89 16 21 C -0.15 -0.97 6.86 -26.74 -0.18 -1.15 16 22 C 0.52 5.55 8.43 -10.86 -0.09 5.46 16 23 O -0.53 -7.89 18.03 5.56 0.10 -7.79 16 24 N -0.71 -6.71 5.46 -53.88 -0.29 -7.00 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 27 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.43 6.93 7.42 -182.60 -1.35 5.58 16 30 H 0.43 4.88 8.00 -182.60 -1.46 3.42 16 31 H 0.09 0.64 7.91 -51.92 -0.41 0.23 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.42 4.06 8.94 -40.82 -0.36 3.70 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -33.72 305.05 -6.92 -40.64 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.32 Total: 6.64 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.17 Total: 6.51 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.72 Total: -45.74 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: 0.28 Total: -28.44 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.72 -6.92 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329172676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.438 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds