Wall clock time and date at job start Mon Mar 30 2020 00:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00140 * 12 2 1 14 14 N 1.34774 * 120.00337 * 299.99528 * 12 2 1 15 15 N 1.40105 * 120.00180 * 179.97438 * 14 12 2 16 16 C 1.34776 * 119.99582 * 180.02562 * 15 14 12 17 17 O 1.21277 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99433 * 180.02562 * 16 15 14 19 19 H 1.08991 * 110.22026 * 41.92588 * 18 16 15 20 20 C 1.54480 * 110.24351 * 279.99505 * 18 16 15 21 21 C 1.54624 * 101.76637 * 215.58629 * 20 18 16 22 22 C 1.51287 * 104.19596 * 24.79891 * 21 20 18 23 23 O 1.21280 * 124.94163 * 163.74707 * 22 21 20 24 24 N 1.34420 * 110.11225 * 343.75069 * 22 21 20 25 25 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 27 27 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 28 28 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00043 * 0.02562 * 14 12 2 30 30 H 0.96997 * 119.99772 * 0.02562 * 15 14 12 31 31 H 1.09007 * 110.97194 * 333.71141 * 20 18 16 32 32 H 1.09001 * 110.96764 * 97.46428 * 20 18 16 33 33 H 1.08998 * 110.48919 * 143.47871 * 21 20 18 34 34 H 1.09002 * 110.48835 * 265.99147 * 21 20 18 35 35 H 0.96997 * 124.34910 * 179.57132 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 3.1572 -2.2796 -3.6036 10 1 1.1766 -1.5863 -4.8186 11 1 3.1504 -0.1777 -4.8137 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7068 -0.2498 2.4546 15 7 2.1733 -0.9106 3.5986 16 6 1.8473 -0.4503 4.8226 17 8 1.1498 0.5356 4.9339 18 6 2.3497 -1.1607 6.0531 19 1 3.3920 -1.4507 5.9215 20 6 1.4813 -2.4048 6.3440 21 6 1.4626 -2.4218 7.8901 22 6 1.7146 -0.9819 8.2800 23 8 1.5042 -0.5127 9.3784 24 7 2.2055 -0.2983 7.2318 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1613 -3.4844 29 1 1.1489 0.5386 2.5436 30 1 2.7309 -1.6993 3.5095 31 1 0.4753 -2.2808 5.9430 32 1 1.9482 -3.3073 5.9496 33 1 0.4904 -2.7516 8.2563 34 1 2.2528 -3.0669 8.2741 35 1 2.4347 0.6440 7.2519 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329172676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:48 Heat of formation + Delta-G solvation = -106.882589 kcal Electronic energy + Delta-G solvation = -20175.509236 eV Core-core repulsion = 16787.485863 eV Total energy + Delta-G solvation = -3388.023373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.98385 -40.92377 -39.82598 -37.35775 -36.40209 -35.80971 -33.28429 -32.31486 -31.67773 -28.95449 -27.21377 -24.83283 -23.69498 -22.40072 -21.67629 -21.32822 -19.15806 -18.96185 -18.29416 -17.94410 -17.48130 -16.74551 -16.50981 -16.39655 -16.01180 -15.69693 -15.11685 -14.94063 -14.72995 -14.49314 -14.15178 -13.64336 -13.56914 -13.03753 -12.99120 -12.74338 -12.62086 -12.42654 -12.18092 -12.09735 -12.03477 -11.46446 -11.06082 -11.04428 -10.76806 -10.46782 -10.24793 -9.40962 -8.15700 -6.26870 0.76457 1.18737 1.43028 1.46066 1.51653 1.58598 1.81176 2.27561 2.44783 2.88732 3.15227 3.28120 3.42903 3.67113 3.98667 4.04862 4.22324 4.47792 4.71260 4.83956 4.89386 4.95901 4.97705 5.04031 5.43065 5.58575 5.59588 5.72633 5.74530 5.89972 5.97048 6.17670 6.56751 6.82727 6.84725 7.11613 7.36995 7.46209 8.90466 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.053225 B = 0.003385 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.943607 B = 8270.248248 C = 8532.682674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.035 3.965 3 H 0.047 0.953 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.531 3.469 13 O -0.568 6.568 14 N -0.531 5.531 15 N -0.508 5.508 16 C 0.503 3.497 17 O -0.573 6.573 18 C 0.131 3.869 19 H 0.155 0.845 20 C -0.118 4.118 21 C -0.143 4.143 22 C 0.513 3.487 23 O -0.584 6.584 24 N -0.710 5.710 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.265 0.735 29 H 0.432 0.568 30 H 0.440 0.560 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -7.265 16.074 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.320 3.680 13 O -0.445 6.445 14 N -0.281 5.281 15 N -0.255 5.255 16 C 0.288 3.712 17 O -0.450 6.450 18 C 0.020 3.980 19 H 0.172 0.828 20 C -0.156 4.156 21 C -0.182 4.182 22 C 0.302 3.698 23 O -0.464 6.464 24 N -0.364 5.364 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.283 0.717 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.247 -7.042 16.497 18.077 hybrid contribution 0.218 0.641 -1.080 1.275 sum 2.465 -6.402 15.416 16.874 Atomic orbital electron populations 1.21630 0.94974 0.99945 1.01765 1.18794 0.95347 0.96265 0.88344 0.93509 1.21294 1.31819 1.12968 0.90463 0.92370 1.25619 0.95123 0.95676 1.01579 1.69963 1.37168 1.23572 1.24400 0.85488 0.78265 0.78601 0.79212 1.19857 1.20230 1.20353 1.21879 0.78660 0.84318 0.83166 1.90533 1.39518 1.27912 1.86521 1.45382 1.54295 1.31079 0.97344 1.44912 1.52502 1.30605 0.97499 1.21650 0.80714 0.85089 0.83697 1.90765 1.39637 1.28090 1.86507 1.21757 1.04381 0.90731 0.81085 0.82819 1.22814 1.00812 0.96659 0.95287 1.22429 1.07326 0.92273 0.96203 1.21631 0.74263 0.90983 0.82948 1.90744 1.54652 1.76466 1.24579 1.46112 1.65518 1.13636 1.11161 0.95064 0.93529 0.90799 0.92566 0.72561 0.71657 0.90221 0.83711 0.86747 0.84098 0.74916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.77 16 2 C 0.04 1.65 2.64 -12.29 -0.03 1.62 16 3 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.53 -28.45 8.37 25.60 0.21 -28.24 16 5 H 0.06 3.31 6.75 -2.91 -0.02 3.29 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -49.30 11.32 21.45 0.24 -49.06 16 8 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 C 0.53 21.73 7.26 87.66 0.64 22.37 16 13 O -0.57 -25.80 15.30 -3.03 -0.05 -25.84 16 14 N -0.53 -17.04 6.15 -173.54 -1.07 -18.11 16 15 N -0.51 -12.09 6.26 -173.53 -1.09 -13.18 16 16 C 0.50 10.81 7.15 87.66 0.63 11.44 16 17 O -0.57 -17.26 16.38 -3.02 -0.05 -17.31 16 18 C 0.13 1.58 3.93 44.70 0.18 1.76 16 19 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 20 C -0.12 -0.89 6.67 31.65 0.21 -0.68 16 21 C -0.14 -1.31 6.86 30.59 0.21 -1.10 16 22 C 0.51 10.14 8.43 87.90 0.74 10.88 16 23 O -0.58 -17.40 18.03 -3.03 -0.05 -17.45 16 24 N -0.71 -12.29 5.46 -442.96 -2.42 -14.71 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 27 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 28 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.43 13.51 7.42 -213.32 -1.58 11.92 16 30 H 0.44 8.71 8.00 -213.32 -1.71 7.01 16 31 H 0.08 0.86 7.91 -2.38 -0.02 0.84 16 32 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.41 7.76 8.94 -92.71 -0.83 6.93 16 Total: -1.00 -74.96 305.05 -1.54 -76.50 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -2.96 Total: 19.72 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 3.87 Total: 14.76 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -4.33 Total: -95.06 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -0.15 Total: -60.60 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.96 -1.54 -76.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329172676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.381 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds