Wall clock time and date at job start Mon Mar 30 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 C 1.53004 * 109.47269 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46754 * 63.92154 * 4 3 2 6 6 C 1.36905 * 120.00391 * 263.94940 * 5 4 3 7 7 H 1.08004 * 119.99864 * 139.63947 * 6 5 4 8 8 C 1.39010 * 120.00286 * 319.64477 * 6 5 4 9 9 N 1.31384 * 120.00033 * 168.19661 * 8 6 5 10 10 Si 1.86804 * 120.00023 * 348.19548 * 8 6 5 11 11 H 1.48505 * 109.46578 * 91.14550 * 10 8 6 12 12 H 1.48502 * 109.47114 * 211.14295 * 10 8 6 13 13 H 1.48496 * 109.47160 * 331.14817 * 10 8 6 14 14 C 1.34781 * 119.99535 * 83.95953 * 5 4 3 15 15 O 1.21605 * 120.00143 * 5.30054 * 14 5 4 16 16 C 1.47620 * 119.99700 * 185.29947 * 14 5 4 17 17 C 1.41101 * 125.98573 * 174.17739 * 16 14 5 18 18 C 1.35580 * 107.79770 * 180.12268 * 17 16 14 19 19 O 1.35764 * 126.07707 * 179.90976 * 18 17 16 20 20 N 1.35866 * 107.84497 * 359.63889 * 18 17 16 21 21 C 1.46494 * 125.94686 * 180.20450 * 20 18 17 22 22 N 1.31923 * 125.98745 * 353.89320 * 16 14 5 23 23 H 1.09004 * 109.46945 * 299.99398 * 1 2 3 24 24 H 1.09000 * 109.47609 * 59.99941 * 1 2 3 25 25 H 1.09001 * 109.47554 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47130 * 60.00228 * 3 2 1 27 27 H 1.08997 * 109.47245 * 300.00170 * 3 2 1 28 28 H 1.08999 * 109.47136 * 303.92935 * 4 3 2 29 29 H 1.08999 * 109.47316 * 183.92454 * 4 3 2 30 30 H 0.97006 * 120.00170 * 180.02562 * 9 8 6 31 31 H 1.08002 * 126.09920 * 0.02779 * 17 16 14 32 32 H 0.96706 * 113.99698 * 269.68652 * 19 18 17 33 33 H 1.09000 * 109.46924 * 90.00549 * 21 20 18 34 34 H 1.09002 * 109.47166 * 210.00405 * 21 20 18 35 35 H 1.09002 * 109.47360 * 330.00607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9737 0.5410 -1.2416 6 6 4.2140 -0.8066 -1.2660 7 1 3.9051 -1.3949 -2.1174 8 6 4.8556 -1.4178 -0.1949 9 7 4.8818 -2.7283 -0.1058 10 14 5.6805 -0.3757 1.1178 11 1 4.7126 -0.0971 2.2091 12 1 6.8499 -1.1072 1.6681 13 1 6.1345 0.9055 0.5199 14 6 4.1405 1.2756 -2.3592 15 8 4.0212 2.4850 -2.3153 16 6 4.4680 0.6121 -3.6365 17 6 4.5559 1.2387 -4.8977 18 6 4.8746 0.2889 -5.8111 19 8 5.0498 0.4870 -7.1428 20 7 4.9934 -0.8955 -5.1561 21 6 5.3322 -2.1844 -5.7642 22 7 4.7350 -0.6697 -3.7981 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8527 0.5840 0.8518 29 1 3.9786 2.1779 0.0697 30 1 5.3292 -3.1548 0.6418 31 1 4.3961 2.2876 -5.0996 32 1 4.2428 0.3828 -7.6654 33 1 6.4141 -2.3165 -5.7567 34 1 4.8641 -2.9884 -5.1963 35 1 4.9705 -2.2074 -6.7922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329325278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:06 Heat of formation + Delta-G solvation = -5.117132 kcal Electronic energy + Delta-G solvation = -21345.655732 eV Core-core repulsion = 17962.045240 eV Total energy + Delta-G solvation = -3383.610492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75761 -38.74728 -37.12850 -36.75739 -34.82437 -32.72482 -31.89458 -29.77233 -28.49613 -26.68666 -25.81268 -24.76967 -23.05890 -21.40408 -20.84277 -18.95998 -18.14794 -16.98987 -16.18279 -15.97680 -15.74743 -15.37601 -14.87426 -14.63495 -14.34339 -13.99166 -13.81944 -13.66260 -13.44778 -12.70684 -12.50184 -12.35007 -12.07417 -11.77970 -11.62314 -11.45063 -11.33011 -10.87132 -10.76943 -10.28026 -9.80615 -9.55420 -9.21942 -9.10571 -8.68925 -8.65893 -8.11338 -7.71876 -6.28363 -3.88863 2.05602 2.61489 2.79554 3.13346 3.29096 3.33109 4.01739 4.21985 4.30807 4.42536 4.54138 4.90742 5.15284 5.44582 5.56327 5.60791 5.65878 5.73813 5.78266 5.84324 5.93525 6.03175 6.03800 6.12839 6.25153 6.36400 6.43394 6.81745 7.00329 7.39724 7.77307 7.80216 8.12046 8.18541 8.57330 9.06965 9.41981 9.66954 10.81442 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.007476 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.354074 B = 3744.427345 C = 4282.645472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.054 3.946 4 C 0.096 3.904 5 N -0.436 5.436 6 C -0.308 4.308 7 H 0.131 0.869 8 C 0.068 3.932 9 N -0.861 5.861 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.543 3.457 15 O -0.594 6.594 16 C 0.061 3.939 17 C -0.231 4.231 18 C 0.229 3.771 19 O -0.469 6.469 20 N -0.393 5.393 21 C 0.104 3.896 22 N -0.181 5.181 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.272 0.728 31 H 0.154 0.846 32 H 0.390 0.610 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 2.393 -7.009 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.024 4.024 4 C -0.026 4.026 5 N -0.154 5.154 6 C -0.437 4.437 7 H 0.148 0.852 8 C -0.138 4.138 9 N -0.498 5.498 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.187 1.187 14 C 0.332 3.668 15 O -0.479 6.479 16 C -0.105 4.105 17 C -0.262 4.262 18 C 0.063 3.937 19 O -0.271 6.271 20 N -0.188 5.188 21 C -0.038 4.038 22 N -0.010 5.010 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.302 1.571 -6.312 7.294 hybrid contribution -0.290 1.051 0.083 1.094 sum -3.591 2.622 -6.229 7.654 Atomic orbital electron populations 1.22664 0.82875 1.02127 0.98843 1.88189 1.17840 1.26755 1.95057 1.22868 0.94637 0.85216 0.99633 1.21869 0.92488 0.98996 0.89283 1.43613 1.55941 1.08869 1.07014 1.19562 1.36171 0.80297 1.07719 0.85191 1.25298 0.95723 0.95341 0.97442 1.69643 1.40858 1.08355 1.30901 0.87018 0.79167 0.81324 0.82045 1.20055 1.21700 1.18706 1.17077 0.81701 0.85330 0.82695 1.90634 1.58200 1.13228 1.85811 1.21868 1.02614 0.91269 0.94799 1.21010 1.13909 1.00239 0.91071 1.18747 1.04545 0.86720 0.83731 1.84883 1.37618 1.91002 1.13630 1.49848 1.54826 1.06945 1.07139 1.21717 1.01774 0.82828 0.97493 1.78876 1.17714 1.15787 0.88653 0.95070 0.94834 0.90072 0.93551 0.93022 0.90261 0.89464 0.91740 0.82817 0.75492 0.91062 0.88925 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.69 10.42 -35.23 -0.37 -8.06 16 3 C 0.05 1.08 6.24 37.16 0.23 1.31 16 4 C 0.10 2.19 4.20 -4.04 -0.02 2.17 16 5 N -0.44 -11.06 2.14 -115.96 -0.25 -11.30 16 6 C -0.31 -8.42 8.35 -15.00 -0.13 -8.54 16 7 H 0.13 3.79 5.91 -52.48 -0.31 3.48 16 8 C 0.07 1.88 5.42 -17.46 -0.09 1.79 16 9 N -0.86 -24.51 13.96 55.50 0.77 -23.73 16 10 Si 0.88 21.20 24.66 -169.99 -4.19 17.01 16 11 H -0.27 -6.29 6.66 56.52 0.38 -5.91 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.26 -6.40 7.01 56.52 0.40 -6.00 16 14 C 0.54 13.66 7.59 -12.43 -0.09 13.57 16 15 O -0.59 -15.28 16.55 5.27 0.09 -15.20 16 16 C 0.06 1.42 6.84 -82.91 -0.57 0.85 16 17 C -0.23 -4.57 10.60 -39.45 -0.42 -4.99 16 18 C 0.23 3.94 7.97 -16.72 -0.13 3.80 16 19 O -0.47 -6.11 13.58 -19.00 -0.26 -6.37 16 20 N -0.39 -7.21 4.04 -68.19 -0.28 -7.48 16 21 C 0.10 1.38 11.42 59.84 0.68 2.06 16 22 N -0.18 -4.18 9.27 33.34 0.31 -3.87 16 23 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.85 3.07 -51.93 -0.16 1.69 16 29 H 0.09 1.87 7.54 -51.93 -0.39 1.48 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 32 H 0.39 2.93 9.06 45.56 0.41 3.34 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -34.16 302.11 -2.46 -36.61 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.42 Total: 4.19 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 0.58 Total: 13.64 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.56 Total: -46.39 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.54 Total: -29.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.19 Total: 17.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.16 -2.46 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329325278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.498 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds