Wall clock time and date at job start Mon Mar 30 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 C 1.53004 * 109.47269 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46754 * 63.92154 * 4 3 2 6 6 C 1.36905 * 120.00391 * 263.94940 * 5 4 3 7 7 H 1.08004 * 119.99864 * 139.63947 * 6 5 4 8 8 C 1.39010 * 120.00286 * 319.64477 * 6 5 4 9 9 N 1.31384 * 120.00033 * 168.19661 * 8 6 5 10 10 Si 1.86804 * 120.00023 * 348.19548 * 8 6 5 11 11 H 1.48505 * 109.46578 * 91.14550 * 10 8 6 12 12 H 1.48502 * 109.47114 * 211.14295 * 10 8 6 13 13 H 1.48496 * 109.47160 * 331.14817 * 10 8 6 14 14 C 1.34781 * 119.99535 * 83.95953 * 5 4 3 15 15 O 1.21605 * 120.00143 * 5.30054 * 14 5 4 16 16 C 1.47620 * 119.99700 * 185.29947 * 14 5 4 17 17 C 1.41101 * 125.98573 * 174.17739 * 16 14 5 18 18 C 1.35580 * 107.79770 * 180.12268 * 17 16 14 19 19 O 1.35764 * 126.07707 * 179.90976 * 18 17 16 20 20 N 1.35866 * 107.84497 * 359.63889 * 18 17 16 21 21 C 1.46494 * 125.94686 * 180.20450 * 20 18 17 22 22 N 1.31923 * 125.98745 * 353.89320 * 16 14 5 23 23 H 1.09004 * 109.46945 * 299.99398 * 1 2 3 24 24 H 1.09000 * 109.47609 * 59.99941 * 1 2 3 25 25 H 1.09001 * 109.47554 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47130 * 60.00228 * 3 2 1 27 27 H 1.08997 * 109.47245 * 300.00170 * 3 2 1 28 28 H 1.08999 * 109.47136 * 303.92935 * 4 3 2 29 29 H 1.08999 * 109.47316 * 183.92454 * 4 3 2 30 30 H 0.97006 * 120.00170 * 180.02562 * 9 8 6 31 31 H 1.08002 * 126.09920 * 0.02779 * 17 16 14 32 32 H 0.96706 * 113.99698 * 269.68652 * 19 18 17 33 33 H 1.09000 * 109.46924 * 90.00549 * 21 20 18 34 34 H 1.09002 * 109.47166 * 210.00405 * 21 20 18 35 35 H 1.09002 * 109.47360 * 330.00607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9737 0.5410 -1.2416 6 6 4.2140 -0.8066 -1.2660 7 1 3.9051 -1.3949 -2.1174 8 6 4.8556 -1.4178 -0.1949 9 7 4.8818 -2.7283 -0.1058 10 14 5.6805 -0.3757 1.1178 11 1 4.7126 -0.0971 2.2091 12 1 6.8499 -1.1072 1.6681 13 1 6.1345 0.9055 0.5199 14 6 4.1405 1.2756 -2.3592 15 8 4.0212 2.4850 -2.3153 16 6 4.4680 0.6121 -3.6365 17 6 4.5559 1.2387 -4.8977 18 6 4.8746 0.2889 -5.8111 19 8 5.0498 0.4870 -7.1428 20 7 4.9934 -0.8955 -5.1561 21 6 5.3322 -2.1844 -5.7642 22 7 4.7350 -0.6697 -3.7981 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8527 0.5840 0.8518 29 1 3.9786 2.1779 0.0697 30 1 5.3292 -3.1548 0.6418 31 1 4.3961 2.2876 -5.0996 32 1 4.2428 0.3828 -7.6654 33 1 6.4141 -2.3165 -5.7567 34 1 4.8641 -2.9884 -5.1963 35 1 4.9705 -2.2074 -6.7922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329325278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:06 Heat of formation + Delta-G solvation = -33.969101 kcal Electronic energy + Delta-G solvation = -21346.906847 eV Core-core repulsion = 17962.045240 eV Total energy + Delta-G solvation = -3384.861607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.27973 -40.55100 -38.62054 -38.06488 -36.74034 -34.13223 -33.91349 -31.39385 -30.02441 -28.09883 -27.23170 -26.67638 -24.68498 -23.05535 -22.21072 -20.72976 -19.73029 -18.66943 -17.83613 -17.53980 -17.31861 -16.95103 -16.35973 -16.33433 -15.86011 -15.69641 -15.36802 -15.17740 -14.86319 -14.43409 -14.38611 -13.62715 -13.50490 -13.37482 -13.15111 -13.11822 -12.71507 -12.56976 -12.34916 -12.01254 -11.65537 -11.24445 -11.17062 -10.71806 -10.47495 -10.19870 -9.72465 -9.54995 -8.34389 -5.98052 0.50230 1.04980 1.21756 1.34899 1.40532 1.41986 2.23319 2.40858 2.49989 2.93584 3.06722 3.25078 3.60949 3.99253 4.12786 4.21890 4.38636 4.43125 4.47482 4.54562 4.57084 4.58173 4.64500 4.72646 4.73735 4.84436 4.85835 5.38383 5.47616 5.76533 6.16594 6.37573 6.46195 6.53222 6.73193 7.05659 7.41220 7.69226 8.78553 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.007476 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.354074 B = 3744.427345 C = 4282.645472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.060 3.940 4 C 0.086 3.914 5 N -0.447 5.447 6 C -0.302 4.302 7 H 0.105 0.895 8 C 0.026 3.974 9 N -0.901 5.901 10 Si 0.924 3.076 11 H -0.253 1.253 12 H -0.289 1.289 13 H -0.269 1.269 14 C 0.540 3.460 15 O -0.606 6.606 16 C 0.031 3.969 17 C -0.253 4.253 18 C 0.263 3.737 19 O -0.458 6.458 20 N -0.387 5.387 21 C 0.092 3.908 22 N -0.224 5.224 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.275 0.725 31 H 0.163 0.837 32 H 0.421 0.579 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 3.119 -8.150 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.017 4.017 4 C -0.036 4.036 5 N -0.166 5.166 6 C -0.432 4.432 7 H 0.122 0.878 8 C -0.177 4.177 9 N -0.540 5.540 10 Si 0.752 3.248 11 H -0.179 1.179 12 H -0.216 1.216 13 H -0.193 1.193 14 C 0.329 3.671 15 O -0.492 6.492 16 C -0.134 4.134 17 C -0.283 4.283 18 C 0.095 3.905 19 O -0.264 6.264 20 N -0.182 5.182 21 C -0.048 4.048 22 N -0.055 5.055 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.181 0.819 32 H 0.281 0.719 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.663 2.295 -7.460 8.622 hybrid contribution -0.222 0.813 0.149 0.856 sum -3.885 3.108 -7.311 8.843 Atomic orbital electron populations 1.22878 0.80265 1.03233 1.00564 1.88120 1.20844 1.27680 1.95404 1.22806 0.92630 0.85141 1.01141 1.22057 0.94829 0.98859 0.87891 1.43693 1.56561 1.08285 1.08014 1.19312 1.35936 0.80971 1.06949 0.87756 1.25827 0.96308 0.96167 0.99362 1.69726 1.42587 1.09599 1.32088 0.86229 0.78612 0.79498 0.80509 1.17887 1.21602 1.19333 1.17450 0.80842 0.85392 0.83452 1.90594 1.58604 1.13631 1.86328 1.21827 1.04320 0.92024 0.95221 1.21145 1.15588 1.01287 0.90317 1.18540 1.01353 0.85525 0.85124 1.84849 1.39628 1.90660 1.11274 1.50099 1.53288 1.08839 1.05957 1.22156 1.02710 0.80533 0.99362 1.78739 1.19239 1.15976 0.91537 0.92309 0.94013 0.89404 0.89709 0.93593 0.91012 0.88633 0.91563 0.81916 0.71858 0.89969 0.89483 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.93 10.42 -148.98 -1.55 -18.48 16 3 C 0.06 2.33 6.24 71.98 0.45 2.78 16 4 C 0.09 3.86 4.20 86.38 0.36 4.22 16 5 N -0.45 -23.01 2.14 -639.04 -1.37 -24.38 16 6 C -0.30 -16.97 8.35 84.09 0.70 -16.27 16 7 H 0.11 6.36 5.91 -2.91 -0.02 6.34 16 8 C 0.03 1.45 5.42 84.95 0.46 1.91 16 9 N -0.90 -52.68 13.96 21.67 0.30 -52.37 16 10 Si 0.92 44.05 24.66 68.60 1.69 45.74 16 11 H -0.25 -11.10 6.66 99.48 0.66 -10.44 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.27 -12.90 7.01 99.48 0.70 -12.20 16 14 C 0.54 27.58 7.59 86.72 0.66 28.24 16 15 O -0.61 -31.38 16.55 -4.05 -0.07 -31.45 16 16 C 0.03 1.47 6.84 42.31 0.29 1.76 16 17 C -0.25 -9.75 10.60 22.36 0.24 -9.52 16 18 C 0.26 8.42 7.97 83.45 0.67 9.08 16 19 O -0.46 -9.99 13.58 -90.90 -1.23 -11.23 16 20 N -0.39 -13.62 4.04 -480.56 -1.94 -15.56 16 21 C 0.09 2.23 11.42 127.77 1.46 3.69 16 22 N -0.22 -10.48 9.27 -48.44 -0.45 -10.93 16 23 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 3.31 3.07 -2.39 -0.01 3.30 16 29 H 0.10 4.04 7.54 -2.39 -0.02 4.03 16 30 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.16 5.79 8.06 -2.91 -0.02 5.77 16 32 H 0.42 4.20 9.06 -74.05 -0.67 3.53 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -76.02 302.11 2.32 -73.71 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.40 Total: 17.00 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: 6.53 Total: 27.95 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -3.46 Total: -103.23 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -2.85 Total: -61.16 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.69 Total: 45.74 kcal Total: -76.02 2.32 -73.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329325278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.737 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds