Wall clock time and date at job start Mon Mar 30 2020 00:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00177 * 2 1 4 4 O 1.42905 * 109.46803 * 85.76182 * 3 2 1 5 5 C 1.42892 * 114.00535 * 286.10547 * 4 3 2 6 6 C 1.50688 * 109.47294 * 205.76260 * 3 2 1 7 7 O 1.21294 * 120.00028 * 30.00116 * 6 3 2 8 8 N 1.34775 * 120.00300 * 209.99791 * 6 3 2 9 9 C 1.40163 * 120.00351 * 179.97438 * 8 6 3 10 10 C 1.40410 * 125.97013 * 0.02562 * 9 8 6 11 11 C 1.35236 * 107.86549 * 179.73294 * 10 9 8 12 12 N 1.34967 * 107.86295 * 0.39233 * 11 10 9 13 13 C 1.46496 * 125.97987 * 179.87503 * 12 11 10 14 14 C 1.50698 * 109.47578 * 124.70774 * 13 12 11 15 15 H 1.08009 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00381 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00145 * 359.73138 * 16 14 13 18 18 Si 1.86803 * 120.00087 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47022 * 179.72583 * 18 16 14 20 20 H 1.48502 * 109.47050 * 299.72252 * 18 16 14 21 21 H 1.48500 * 109.47363 * 59.72586 * 18 16 14 22 22 N 1.31210 * 125.97542 * 179.97438 * 9 8 6 23 23 H 1.09007 * 109.47333 * 186.53313 * 1 2 3 24 24 H 1.09002 * 109.47067 * 306.53008 * 1 2 3 25 25 H 1.08994 * 109.47591 * 66.53471 * 1 2 3 26 26 H 1.08993 * 109.46943 * 325.76819 * 3 2 1 27 27 H 1.09005 * 109.46939 * 316.33171 * 5 4 3 28 28 H 1.08995 * 109.47484 * 76.32525 * 5 4 3 29 29 H 1.09001 * 109.47446 * 196.33040 * 5 4 3 30 30 H 0.97001 * 119.99883 * 0.02562 * 8 6 3 31 31 H 1.07997 * 126.06533 * 359.97438 * 10 9 8 32 32 H 1.08002 * 126.06916 * 180.25842 * 11 10 9 33 33 H 1.09001 * 109.46910 * 4.71220 * 13 12 11 34 34 H 1.08999 * 109.47464 * 244.71477 * 13 12 11 35 35 H 0.96999 * 119.99709 * 0.26689 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7810 1.3437 5 6 0.8653 2.1750 1.9179 6 6 3.3834 1.2439 -0.6175 7 8 3.6282 0.4174 -1.4708 8 7 4.3397 2.1072 -0.2217 9 6 5.6171 2.0496 -0.7956 10 6 6.0356 1.1486 -1.7878 11 6 7.3285 1.4203 -2.0764 12 7 7.7205 2.4472 -1.2932 13 6 9.0511 3.0600 -1.2794 14 6 8.9244 4.5419 -1.5221 15 1 7.9499 4.9832 -1.6713 16 6 10.0522 5.3343 -1.5538 17 7 11.2383 4.7977 -1.3669 18 14 9.8949 7.1713 -1.8540 19 1 11.2433 7.7933 -1.8341 20 1 9.2618 7.4043 -3.1769 21 1 9.0548 7.7767 -0.7896 22 7 6.6306 2.8289 -0.5004 23 1 -0.3634 -1.0210 0.1169 24 1 -0.3633 0.6117 0.8258 25 1 -0.3634 0.4092 -0.9426 26 1 1.3819 1.9829 -0.5781 27 1 0.2979 2.7558 1.1907 28 1 0.2972 1.2875 2.1967 29 1 1.0488 2.7822 2.8043 30 1 4.1441 2.7680 0.4610 31 1 5.4309 0.3780 -2.2428 32 1 7.9397 0.9055 -2.8030 33 1 9.6643 2.6147 -2.0629 34 1 9.5198 2.8893 -0.3102 35 1 11.3199 3.8439 -1.2106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331960190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:44 Heat of formation + Delta-G solvation = -34.253313 kcal Electronic energy + Delta-G solvation = -20184.772693 eV Core-core repulsion = 16799.898762 eV Total energy + Delta-G solvation = -3384.873931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88534 -40.00552 -38.48560 -36.55607 -34.82615 -33.65699 -31.06056 -29.49802 -29.31646 -26.62590 -26.44021 -25.63127 -23.12280 -21.78579 -20.54577 -19.71410 -17.98502 -17.79099 -17.60948 -17.18733 -16.39876 -15.50062 -15.23206 -14.85231 -14.70688 -14.47009 -14.08273 -13.87299 -13.76961 -13.30974 -13.05704 -12.60237 -12.42654 -12.17614 -11.90009 -11.82706 -11.16617 -10.81801 -10.51884 -10.47284 -10.32092 -10.15983 -10.09733 -9.71507 -9.00490 -8.58034 -8.22063 -7.54829 -6.57995 -4.32024 1.91206 2.46846 2.78523 3.19361 3.37816 3.39797 3.43520 3.58796 3.64656 3.91063 4.20660 4.41125 4.58019 4.69225 4.80831 4.90739 4.96063 5.15869 5.20445 5.35744 5.43517 5.71009 6.14162 6.31972 6.39981 6.46569 6.55281 6.59704 6.75241 7.29452 7.44193 7.69237 7.82440 8.08885 8.34100 8.52807 8.61763 9.36229 10.79702 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031956 B = 0.003734 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.001031 B = 7496.645555 C = 8071.028782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.367 6.367 3 C 0.237 3.763 4 O -0.385 6.385 5 C 0.022 3.978 6 C 0.541 3.459 7 O -0.490 6.490 8 N -0.613 5.613 9 C 0.257 3.743 10 C -0.285 4.285 11 C 0.052 3.948 12 N -0.316 5.316 13 C 0.249 3.751 14 C -0.608 4.608 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.077 2.923 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.285 1.285 22 N -0.297 5.297 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.419 0.581 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.199 -6.121 3.426 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.286 6.286 3 C 0.138 3.862 4 O -0.305 6.305 5 C -0.074 4.074 6 C 0.324 3.676 7 O -0.362 6.362 8 N -0.262 5.262 9 C 0.004 3.996 10 C -0.316 4.316 11 C -0.098 4.098 12 N -0.098 5.098 13 C 0.131 3.869 14 C -0.647 4.647 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.540 5.540 18 Si 0.904 3.096 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.211 1.211 22 N -0.128 5.128 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.255 0.745 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.351 -4.472 3.482 20.164 hybrid contribution -1.790 -1.552 -0.042 2.370 sum -21.141 -6.025 3.440 22.250 Atomic orbital electron populations 1.23195 0.80171 1.04039 1.00667 1.88129 1.20279 1.26585 1.93591 1.23021 0.93522 0.85200 0.84447 1.88087 1.31467 1.82292 1.28685 1.23084 0.85742 0.99516 0.99070 1.19400 0.84159 0.81120 0.82937 1.90706 1.79089 1.35432 1.30986 1.42258 1.07481 1.35968 1.40502 1.19071 0.85980 0.97425 0.97105 1.21534 0.95913 1.07834 1.06344 1.22563 0.96280 0.92917 0.97994 1.48816 1.10330 1.23738 1.26892 1.19776 0.73764 0.95291 0.98096 1.22107 0.96668 0.91222 1.54677 0.91815 1.25928 0.91717 1.07003 0.93533 1.70850 1.24280 1.14435 1.44449 0.83416 0.75950 0.73547 0.76681 1.20526 1.21246 1.21123 1.77370 0.93610 1.22458 1.19342 0.88659 0.93035 0.93247 0.89174 0.93344 0.92878 0.88775 0.74466 0.82135 0.81357 0.93551 0.94686 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.68 101.05 1.08 1.19 16 2 O -0.37 -4.46 10.27 -65.67 -0.67 -5.13 16 3 C 0.24 2.74 3.33 36.00 0.12 2.86 16 4 O -0.38 -4.14 9.76 -59.04 -0.58 -4.71 16 5 C 0.02 0.14 9.76 101.05 0.99 1.13 16 6 C 0.54 8.49 7.56 -10.99 -0.08 8.41 16 7 O -0.49 -9.12 13.87 -12.29 -0.17 -9.29 16 8 N -0.61 -10.19 5.36 -11.13 -0.06 -10.25 16 9 C 0.26 5.35 8.11 -154.39 -1.25 4.09 16 10 C -0.29 -5.79 9.61 -39.83 -0.38 -6.17 16 11 C 0.05 1.06 11.43 -17.24 -0.20 0.86 16 12 N -0.32 -7.48 3.67 -62.57 -0.23 -7.71 16 13 C 0.25 6.34 5.57 -5.20 -0.03 6.31 16 14 C -0.61 -17.19 9.23 -34.44 -0.32 -17.50 16 15 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 17 N -0.90 -26.42 13.65 55.43 0.76 -25.66 16 18 Si 1.08 24.91 29.90 -169.99 -5.08 19.83 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 N -0.30 -7.02 12.42 31.44 0.39 -6.63 16 23 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.05 0.27 4.80 -51.93 -0.25 0.02 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.76 7.56 -51.93 -0.39 0.37 16 27 H 0.05 0.22 7.80 -51.93 -0.41 -0.18 16 28 H 0.05 0.30 6.27 -51.93 -0.33 -0.02 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.42 5.99 8.11 -40.82 -0.33 5.66 16 31 H 0.16 3.15 5.92 -52.49 -0.31 2.84 16 32 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 33 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 34 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 35 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -34.77 304.89 -5.26 -40.03 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.03 Total: 3.21 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.17 Total: 1.72 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.86 Total: -50.25 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.42 Total: -19.14 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.77 -5.26 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331960190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.779 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds