Wall clock time and date at job start Mon Mar 30 2020 00:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00177 * 2 1 4 4 O 1.42905 * 109.46803 * 85.76182 * 3 2 1 5 5 C 1.42892 * 114.00535 * 286.10547 * 4 3 2 6 6 C 1.50688 * 109.47294 * 205.76260 * 3 2 1 7 7 O 1.21294 * 120.00028 * 30.00116 * 6 3 2 8 8 N 1.34775 * 120.00300 * 209.99791 * 6 3 2 9 9 C 1.40163 * 120.00351 * 179.97438 * 8 6 3 10 10 C 1.40410 * 125.97013 * 0.02562 * 9 8 6 11 11 C 1.35236 * 107.86549 * 179.73294 * 10 9 8 12 12 N 1.34967 * 107.86295 * 0.39233 * 11 10 9 13 13 C 1.46496 * 125.97987 * 179.87503 * 12 11 10 14 14 C 1.50698 * 109.47578 * 124.70774 * 13 12 11 15 15 H 1.08009 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00381 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00145 * 359.73138 * 16 14 13 18 18 Si 1.86803 * 120.00087 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47022 * 179.72583 * 18 16 14 20 20 H 1.48502 * 109.47050 * 299.72252 * 18 16 14 21 21 H 1.48500 * 109.47363 * 59.72586 * 18 16 14 22 22 N 1.31210 * 125.97542 * 179.97438 * 9 8 6 23 23 H 1.09007 * 109.47333 * 186.53313 * 1 2 3 24 24 H 1.09002 * 109.47067 * 306.53008 * 1 2 3 25 25 H 1.08994 * 109.47591 * 66.53471 * 1 2 3 26 26 H 1.08993 * 109.46943 * 325.76819 * 3 2 1 27 27 H 1.09005 * 109.46939 * 316.33171 * 5 4 3 28 28 H 1.08995 * 109.47484 * 76.32525 * 5 4 3 29 29 H 1.09001 * 109.47446 * 196.33040 * 5 4 3 30 30 H 0.97001 * 119.99883 * 0.02562 * 8 6 3 31 31 H 1.07997 * 126.06533 * 359.97438 * 10 9 8 32 32 H 1.08002 * 126.06916 * 180.25842 * 11 10 9 33 33 H 1.09001 * 109.46910 * 4.71220 * 13 12 11 34 34 H 1.08999 * 109.47464 * 244.71477 * 13 12 11 35 35 H 0.96999 * 119.99709 * 0.26689 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1130 1.7810 1.3437 5 6 0.8653 2.1750 1.9179 6 6 3.3834 1.2439 -0.6175 7 8 3.6282 0.4174 -1.4708 8 7 4.3397 2.1072 -0.2217 9 6 5.6171 2.0496 -0.7956 10 6 6.0356 1.1486 -1.7878 11 6 7.3285 1.4203 -2.0764 12 7 7.7205 2.4472 -1.2932 13 6 9.0511 3.0600 -1.2794 14 6 8.9244 4.5419 -1.5221 15 1 7.9499 4.9832 -1.6713 16 6 10.0522 5.3343 -1.5538 17 7 11.2383 4.7977 -1.3669 18 14 9.8949 7.1713 -1.8540 19 1 11.2433 7.7933 -1.8341 20 1 9.2618 7.4043 -3.1769 21 1 9.0548 7.7767 -0.7896 22 7 6.6306 2.8289 -0.5004 23 1 -0.3634 -1.0210 0.1169 24 1 -0.3633 0.6117 0.8258 25 1 -0.3634 0.4092 -0.9426 26 1 1.3819 1.9829 -0.5781 27 1 0.2979 2.7558 1.1907 28 1 0.2972 1.2875 2.1967 29 1 1.0488 2.7822 2.8043 30 1 4.1441 2.7680 0.4610 31 1 5.4309 0.3780 -2.2428 32 1 7.9397 0.9055 -2.8030 33 1 9.6643 2.6147 -2.0629 34 1 9.5198 2.8893 -0.3102 35 1 11.3199 3.8439 -1.2106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331960190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:43 Heat of formation + Delta-G solvation = -59.350225 kcal Electronic energy + Delta-G solvation = -20185.860977 eV Core-core repulsion = 16799.898762 eV Total energy + Delta-G solvation = -3385.962215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.39045 -41.18622 -39.54969 -37.34045 -36.41157 -35.52948 -32.82078 -31.08484 -30.26838 -28.23462 -27.00340 -26.72968 -25.04532 -23.16412 -22.16509 -21.15149 -19.26305 -19.00863 -18.68773 -18.55102 -17.84651 -16.88225 -16.51222 -16.14117 -15.76483 -15.60252 -15.48117 -15.24438 -14.92913 -14.66255 -14.25905 -13.95254 -13.83285 -13.67651 -13.24078 -13.17571 -12.60983 -12.43262 -12.09136 -11.94588 -11.71604 -11.17775 -11.11579 -11.01694 -10.90525 -10.69161 -9.88850 -9.26889 -8.78290 -6.56050 0.62722 1.09256 1.23666 1.51995 1.58556 1.79969 1.93469 2.12673 2.47974 2.50512 2.86374 3.01493 3.40173 3.59850 3.85570 4.11514 4.24682 4.35657 4.45037 4.53278 4.54883 4.65838 4.75345 4.76632 4.78645 4.93161 5.00034 5.54116 5.72818 5.74778 5.82173 5.90190 6.11106 6.25355 6.40636 6.77717 6.93329 7.19832 8.58548 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031956 B = 0.003734 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.001031 B = 7496.645555 C = 8071.028782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.400 6.400 3 C 0.248 3.752 4 O -0.405 6.405 5 C 0.012 3.988 6 C 0.538 3.462 7 O -0.523 6.523 8 N -0.608 5.608 9 C 0.264 3.736 10 C -0.292 4.292 11 C 0.059 3.941 12 N -0.341 5.341 13 C 0.259 3.741 14 C -0.623 4.623 15 H 0.046 0.954 16 C -0.019 4.019 17 N -0.923 5.923 18 Si 1.121 2.879 19 H -0.275 1.275 20 H -0.270 1.270 21 H -0.275 1.275 22 N -0.340 5.340 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.128 0.872 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.428 0.572 31 H 0.170 0.830 32 H 0.205 0.795 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.300 -5.695 3.290 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.320 6.320 3 C 0.149 3.851 4 O -0.327 6.327 5 C -0.083 4.083 6 C 0.322 3.678 7 O -0.396 6.396 8 N -0.259 5.259 9 C 0.009 3.991 10 C -0.323 4.323 11 C -0.089 4.089 12 N -0.123 5.123 13 C 0.139 3.861 14 C -0.661 4.661 15 H 0.065 0.935 16 C -0.218 4.218 17 N -0.560 5.560 18 Si 0.941 3.059 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.200 1.200 22 N -0.171 5.171 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.267 0.733 31 H 0.187 0.813 32 H 0.222 0.778 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.502 -4.069 3.366 22.141 hybrid contribution -1.290 -1.800 0.043 2.215 sum -22.792 -5.869 3.410 23.781 Atomic orbital electron populations 1.23473 0.77631 1.05355 1.02331 1.88077 1.23044 1.26994 1.93847 1.22796 0.90864 0.86051 0.85357 1.88050 1.33930 1.82434 1.28241 1.23369 0.84535 1.00430 0.99937 1.20306 0.85352 0.79773 0.82319 1.90669 1.80111 1.36420 1.32434 1.42425 1.06228 1.36655 1.40611 1.19440 0.86890 0.96287 0.96465 1.21736 0.96066 1.08028 1.06430 1.23200 0.96709 0.91585 0.97421 1.48617 1.09960 1.25179 1.28532 1.19455 0.75077 0.94291 0.97242 1.22299 0.96000 0.92905 1.54886 0.93524 1.27300 0.91147 1.10852 0.92545 1.70947 1.24951 1.14257 1.45797 0.82874 0.76391 0.69007 0.77606 1.20029 1.19550 1.20018 1.77285 0.94476 1.24420 1.20926 0.87771 0.90926 0.91882 0.85569 0.90952 0.92032 0.87704 0.73291 0.81319 0.77803 0.92626 0.96517 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.68 113.37 1.21 1.29 16 2 O -0.40 -8.95 10.27 -119.87 -1.23 -10.18 16 3 C 0.25 5.20 3.33 71.23 0.24 5.43 16 4 O -0.41 -7.86 9.76 -126.21 -1.23 -9.09 16 5 C 0.01 0.12 9.76 113.37 1.11 1.23 16 6 C 0.54 16.35 7.56 87.65 0.66 17.01 16 7 O -0.52 -19.15 13.87 13.98 0.19 -18.96 16 8 N -0.61 -19.91 5.36 -307.52 -1.65 -21.56 16 9 C 0.26 10.96 8.11 133.33 1.08 12.04 16 10 C -0.29 -11.72 9.61 22.11 0.21 -11.51 16 11 C 0.06 2.36 11.43 83.52 0.96 3.32 16 12 N -0.34 -16.31 3.67 -351.86 -1.29 -17.60 16 13 C 0.26 13.43 5.57 85.63 0.48 13.91 16 14 C -0.62 -35.64 9.23 25.60 0.24 -35.40 16 15 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 16 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 17 N -0.92 -54.21 13.65 21.45 0.29 -53.92 16 18 Si 1.12 49.64 29.90 68.60 2.05 51.69 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 N -0.34 -16.31 12.42 -54.45 -0.68 -16.99 16 23 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 0.50 4.80 -2.39 -0.01 0.49 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.13 1.70 7.56 -2.39 -0.02 1.68 16 27 H 0.07 0.38 7.80 -2.38 -0.02 0.36 16 28 H 0.06 0.51 6.27 -2.39 -0.01 0.50 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.43 12.03 8.11 -92.71 -0.75 11.27 16 31 H 0.17 6.52 5.92 -2.91 -0.02 6.50 16 32 H 0.21 6.35 8.06 -2.91 -0.02 6.33 16 33 H 0.06 2.76 7.94 -2.39 -0.02 2.74 16 34 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 35 H 0.26 15.15 7.22 -92.71 -0.67 14.48 16 Total: -1.00 -75.77 304.89 3.58 -72.19 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.48 Total: 17.69 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.64 Total: 6.73 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -3.32 Total: -110.07 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -2.27 Total: -38.23 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.05 Total: 51.69 kcal Total: -75.77 3.58 -72.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331960190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.839 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds