Wall clock time and date at job start Mon Mar 30 2020 01:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47251 * 272.41716 * 3 2 1 5 5 C 1.36941 * 120.00559 * 264.31004 * 4 3 2 6 6 H 1.07992 * 120.00390 * 196.97115 * 5 4 3 7 7 C 1.38810 * 119.99477 * 16.95982 * 5 4 3 8 8 N 1.31619 * 120.00055 * 22.12192 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 202.11409 * 7 5 4 10 10 H 1.48497 * 109.46986 * 90.00738 * 9 7 5 11 11 H 1.48503 * 109.47133 * 210.00224 * 9 7 5 12 12 H 1.48496 * 109.47067 * 330.00465 * 9 7 5 13 13 C 1.46502 * 120.00037 * 84.30430 * 4 3 2 14 14 C 1.50704 * 109.47392 * 270.00450 * 13 4 3 15 15 C 1.35102 * 126.41527 * 94.99629 * 14 13 4 16 16 N 1.33512 * 108.63020 * 180.02562 * 15 14 13 17 17 C 1.32558 * 109.15638 * 0.02562 * 16 15 14 18 18 C 1.40938 * 132.32304 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.33866 * 0.02562 * 18 17 16 20 20 C 1.36025 * 119.32294 * 180.02562 * 18 17 16 21 21 C 1.40469 * 119.69632 * 359.73101 * 20 18 17 22 22 C 1.34953 * 120.29788 * 0.53955 * 21 20 18 23 23 N 1.36486 * 120.61270 * 359.46353 * 22 21 20 24 24 H 4.40644 * 5.51387 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.47008 * 152.42127 * 3 2 1 26 26 H 1.09003 * 109.47643 * 32.41811 * 3 2 1 27 27 H 0.97002 * 120.00068 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47420 * 150.00287 * 13 4 3 29 29 H 1.09005 * 109.47048 * 30.00257 * 13 4 3 30 30 H 1.08005 * 125.68299 * 0.02562 * 15 14 13 31 31 H 1.08993 * 109.47439 * 89.99708 * 19 18 17 32 32 H 1.09005 * 109.47316 * 210.00354 * 19 18 17 33 33 H 1.09007 * 109.47268 * 330.00077 * 19 18 17 34 34 H 1.08004 * 120.14752 * 180.02562 * 20 18 17 35 35 H 1.08003 * 119.85486 * 180.27872 * 21 20 18 36 36 H 1.08005 * 119.69847 * 179.73058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0574 1.3799 5 6 3.4730 1.0962 2.0356 6 1 4.0793 1.0519 2.9282 7 6 3.0371 2.3224 1.5527 8 7 1.9827 2.3833 0.7673 9 14 3.9469 3.8862 2.0177 10 1 5.0142 4.1531 1.0203 11 1 2.9942 5.0252 2.0400 12 1 4.5555 3.7235 3.3625 13 6 3.2604 -1.3496 2.0586 14 6 1.9706 -1.6724 2.7681 15 6 0.9585 -2.4276 2.2881 16 7 -0.0076 -2.4806 3.2081 17 6 0.3619 -1.7754 4.2680 18 6 -0.2725 -1.5074 5.4976 19 6 -1.6384 -2.0735 5.7888 20 6 0.3607 -0.7324 6.4189 21 6 1.6361 -0.2164 6.1357 22 6 2.2286 -0.4773 4.9516 23 7 1.6044 -1.2532 4.0182 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.9118 -0.4758 26 1 3.0098 -0.8667 -0.5509 27 1 1.6779 3.2402 0.4302 28 1 4.0721 -1.3011 2.7845 29 1 3.4754 -2.1261 1.3245 30 1 0.9348 -2.9083 1.3212 31 1 -1.5338 -3.0480 6.2655 32 1 -2.1769 -1.3991 6.4547 33 1 -2.1927 -2.1828 4.8565 34 1 -0.1130 -0.5189 7.3657 35 1 2.1431 0.3955 6.8672 36 1 3.2075 -0.0720 4.7423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333811381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:17 Heat of formation + Delta-G solvation = 170.636732 kcal Electronic energy + Delta-G solvation = -20478.952242 eV Core-core repulsion = 17546.105024 eV Total energy + Delta-G solvation = -2932.847218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.12578 -37.09788 -36.07705 -33.99103 -31.72522 -31.46238 -30.35647 -29.06486 -26.66890 -26.21768 -25.45181 -22.45060 -22.17945 -21.48876 -19.72609 -17.46295 -16.79803 -16.46186 -16.22965 -15.44416 -15.26969 -14.81181 -13.83439 -13.75538 -13.60706 -13.33204 -13.01855 -12.93213 -12.48202 -12.28663 -11.69533 -11.52007 -11.43146 -11.28302 -11.20519 -11.00978 -10.83147 -10.35483 -10.18569 -10.01277 -9.43043 -8.93957 -8.87506 -8.45670 -8.09263 -7.23292 -6.99769 -5.90373 -3.32475 1.26595 1.87107 3.23243 3.29048 3.34884 3.37511 3.56278 4.05960 4.23152 4.40358 4.50740 4.75528 4.98637 5.16368 5.21650 5.31040 5.46453 5.58667 5.67552 5.80387 5.82495 5.87758 5.90129 6.02560 6.12980 6.27675 6.33165 6.47455 6.53525 6.66896 6.78921 7.12528 7.16934 7.32869 7.44904 7.58964 7.74820 8.14535 8.52749 8.96909 9.25580 9.62563 10.08694 11.11582 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.007800 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.231246 B = 3589.058801 C = 4310.808641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.100 4.100 3 C 0.268 3.732 4 N -0.574 5.574 5 C -0.272 4.272 6 H 0.073 0.927 7 C 0.009 3.991 8 N -0.877 5.877 9 Si 0.901 3.099 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.280 1.280 13 C 0.211 3.789 14 C -0.042 4.042 15 C 0.022 3.978 16 N -0.494 5.494 17 C 0.204 3.796 18 C -0.054 4.054 19 C -0.097 4.097 20 C -0.117 4.117 21 C -0.166 4.166 22 C 0.087 3.913 23 N -0.346 5.346 24 H 0.186 0.814 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.256 0.744 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.166 0.834 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -6.814 7.281 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.102 4.102 3 C 0.144 3.856 4 N -0.292 5.292 5 C -0.401 4.401 6 H 0.091 0.909 7 C -0.192 4.192 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.083 3.917 14 C -0.159 4.159 15 C -0.129 4.129 16 N -0.214 5.214 17 C -0.039 4.039 18 C -0.056 4.056 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.187 4.187 22 C -0.036 4.036 23 N -0.018 5.018 24 H 0.203 0.797 25 H 0.114 0.886 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.183 0.817 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.628 -7.056 7.027 9.978 hybrid contribution 0.583 1.768 0.357 1.896 sum -0.045 -5.288 7.384 9.082 Atomic orbital electron populations 1.24098 0.95252 1.07506 1.04044 1.24063 0.95091 0.94336 0.96739 1.17852 0.83014 0.99519 0.85259 1.44456 1.73643 1.01493 1.09605 1.19126 1.26404 0.83524 1.11065 0.90931 1.24955 0.96124 0.97974 1.00102 1.70157 1.20840 1.24489 1.36390 0.86333 0.79268 0.83186 0.78210 1.21176 1.21880 1.20497 1.19558 0.89082 0.89092 0.93987 1.23041 1.04396 1.03591 0.84865 1.21988 0.90083 1.01795 0.98993 1.70541 1.28382 1.22278 1.00205 1.20568 0.85753 1.00647 0.96980 1.18849 0.97228 0.99452 0.90094 1.20560 0.92122 1.00219 1.02567 1.20733 0.95240 0.98745 0.99304 1.20577 0.96809 1.04415 0.96900 1.21585 0.99435 0.94259 0.88344 1.42588 1.14780 1.31948 1.12441 0.79715 0.88570 0.94294 0.93353 0.92563 0.91012 0.81659 0.91272 0.91622 0.90747 0.85109 0.84101 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.91 19.25 29.55 0.57 -6.34 16 2 C -0.10 -2.41 10.97 -37.12 -0.41 -2.82 16 3 C 0.27 6.13 5.45 -6.83 -0.04 6.09 16 4 N -0.57 -13.17 2.49 -177.95 -0.44 -13.61 16 5 C -0.27 -6.82 9.66 -15.06 -0.15 -6.96 16 6 H 0.07 1.75 7.54 -52.49 -0.40 1.36 16 7 C 0.01 0.24 4.85 -17.43 -0.08 0.16 16 8 N -0.88 -24.39 9.49 55.49 0.53 -23.86 16 9 Si 0.90 20.73 29.61 -169.99 -5.03 15.69 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.21 4.09 6.13 -5.19 -0.03 4.06 16 14 C -0.04 -0.87 6.30 -81.47 -0.51 -1.38 16 15 C 0.02 0.46 11.44 -17.94 -0.21 0.26 16 16 N -0.49 -10.52 11.31 -12.78 -0.14 -10.67 16 17 C 0.20 4.15 7.52 -156.04 -1.17 2.98 16 18 C -0.05 -0.90 5.90 -104.40 -0.62 -1.52 16 19 C -0.10 -1.31 10.03 36.00 0.36 -0.95 16 20 C -0.12 -1.70 9.72 -39.54 -0.38 -2.09 16 21 C -0.17 -2.49 9.99 -39.91 -0.40 -2.89 16 22 C 0.09 1.55 10.85 -16.65 -0.18 1.37 16 23 N -0.35 -7.02 2.95 -58.46 -0.17 -7.20 16 24 H 0.19 3.95 7.80 -54.09 -0.42 3.53 16 25 H 0.10 2.40 6.43 -51.93 -0.33 2.06 16 26 H 0.04 0.76 7.97 -51.93 -0.41 0.35 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.06 1.02 8.02 -51.93 -0.42 0.60 16 29 H 0.07 1.20 7.95 -51.93 -0.41 0.79 16 30 H 0.17 3.07 8.06 -52.48 -0.42 2.64 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.07 1.10 8.10 -51.92 -0.42 0.68 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 36 H 0.16 2.70 7.70 -52.48 -0.40 2.30 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -31.29 315.46 -8.23 -39.52 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.47 Total: 5.42 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.25 Total: -10.05 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.23 Total: -55.33 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.29 -8.23 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333811381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.154 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds