Wall clock time and date at job start Mon Mar 30 2020 01:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47251 * 272.41716 * 3 2 1 5 5 C 1.36941 * 120.00559 * 264.31004 * 4 3 2 6 6 H 1.07992 * 120.00390 * 196.97115 * 5 4 3 7 7 C 1.38810 * 119.99477 * 16.95982 * 5 4 3 8 8 N 1.31619 * 120.00055 * 22.12192 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 202.11409 * 7 5 4 10 10 H 1.48497 * 109.46986 * 90.00738 * 9 7 5 11 11 H 1.48503 * 109.47133 * 210.00224 * 9 7 5 12 12 H 1.48496 * 109.47067 * 330.00465 * 9 7 5 13 13 C 1.46502 * 120.00037 * 84.30430 * 4 3 2 14 14 C 1.50704 * 109.47392 * 270.00450 * 13 4 3 15 15 C 1.35102 * 126.41527 * 94.99629 * 14 13 4 16 16 N 1.33512 * 108.63020 * 180.02562 * 15 14 13 17 17 C 1.32558 * 109.15638 * 0.02562 * 16 15 14 18 18 C 1.40938 * 132.32304 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.33866 * 0.02562 * 18 17 16 20 20 C 1.36025 * 119.32294 * 180.02562 * 18 17 16 21 21 C 1.40469 * 119.69632 * 359.73101 * 20 18 17 22 22 C 1.34953 * 120.29788 * 0.53955 * 21 20 18 23 23 N 1.36486 * 120.61270 * 359.46353 * 22 21 20 24 24 H 4.40644 * 5.51387 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.47008 * 152.42127 * 3 2 1 26 26 H 1.09003 * 109.47643 * 32.41811 * 3 2 1 27 27 H 0.97002 * 120.00068 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47420 * 150.00287 * 13 4 3 29 29 H 1.09005 * 109.47048 * 30.00257 * 13 4 3 30 30 H 1.08005 * 125.68299 * 0.02562 * 15 14 13 31 31 H 1.08993 * 109.47439 * 89.99708 * 19 18 17 32 32 H 1.09005 * 109.47316 * 210.00354 * 19 18 17 33 33 H 1.09007 * 109.47268 * 330.00077 * 19 18 17 34 34 H 1.08004 * 120.14752 * 180.02562 * 20 18 17 35 35 H 1.08003 * 119.85486 * 180.27872 * 21 20 18 36 36 H 1.08005 * 119.69847 * 179.73058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0574 1.3799 5 6 3.4730 1.0962 2.0356 6 1 4.0793 1.0519 2.9282 7 6 3.0371 2.3224 1.5527 8 7 1.9827 2.3833 0.7673 9 14 3.9469 3.8862 2.0177 10 1 5.0142 4.1531 1.0203 11 1 2.9942 5.0252 2.0400 12 1 4.5555 3.7235 3.3625 13 6 3.2604 -1.3496 2.0586 14 6 1.9706 -1.6724 2.7681 15 6 0.9585 -2.4276 2.2881 16 7 -0.0076 -2.4806 3.2081 17 6 0.3619 -1.7754 4.2680 18 6 -0.2725 -1.5074 5.4976 19 6 -1.6384 -2.0735 5.7888 20 6 0.3607 -0.7324 6.4189 21 6 1.6361 -0.2164 6.1357 22 6 2.2286 -0.4773 4.9516 23 7 1.6044 -1.2532 4.0182 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.9118 -0.4758 26 1 3.0098 -0.8667 -0.5509 27 1 1.6779 3.2402 0.4302 28 1 4.0721 -1.3011 2.7845 29 1 3.4754 -2.1261 1.3245 30 1 0.9348 -2.9083 1.3212 31 1 -1.5338 -3.0480 6.2655 32 1 -2.1769 -1.3991 6.4547 33 1 -2.1927 -2.1828 4.8565 34 1 -0.1130 -0.5189 7.3657 35 1 2.1431 0.3955 6.8672 36 1 3.2075 -0.0720 4.7423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333811381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:17 Heat of formation + Delta-G solvation = 154.773697 kcal Electronic energy + Delta-G solvation = -20479.640115 eV Core-core repulsion = 17546.105024 eV Total energy + Delta-G solvation = -2933.535091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.55524 -38.47431 -37.77090 -35.33521 -33.57843 -33.23064 -31.66750 -30.67258 -28.05276 -27.83513 -27.09886 -23.96761 -23.64464 -23.00142 -21.18592 -19.31534 -18.27550 -18.20702 -17.58253 -17.06306 -16.66165 -16.34663 -15.56266 -15.33512 -15.17415 -14.89517 -14.40516 -14.11445 -13.99987 -13.50284 -13.39029 -13.23129 -12.83984 -12.70735 -12.61933 -12.53883 -12.42829 -12.21704 -11.99497 -11.33596 -10.96739 -10.78673 -10.76555 -10.30872 -9.53018 -9.05263 -8.45678 -7.85233 -5.27446 -0.02626 0.51380 1.45566 1.48993 1.55250 1.86515 2.06945 2.40993 2.53067 2.62417 2.69450 3.27583 3.45204 3.70912 3.85938 3.95480 4.07925 4.10507 4.19845 4.36774 4.43946 4.64462 4.77893 4.80087 4.82662 4.87477 4.96787 5.15146 5.21220 5.27414 5.31022 5.50320 5.60296 5.66529 5.79565 5.87463 6.23811 6.34965 7.03244 7.06397 7.39262 7.77706 8.20884 9.15284 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.007800 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.231246 B = 3589.058801 C = 4310.808641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.110 4.110 3 C 0.268 3.732 4 N -0.584 5.584 5 C -0.263 4.263 6 H 0.080 0.920 7 C -0.043 4.043 8 N -0.911 5.911 9 Si 0.957 3.043 10 H -0.285 1.285 11 H -0.309 1.309 12 H -0.266 1.266 13 C 0.213 3.787 14 C -0.063 4.063 15 C 0.012 3.988 16 N -0.525 5.525 17 C 0.186 3.814 18 C -0.079 4.079 19 C -0.092 4.092 20 C -0.102 4.102 21 C -0.146 4.146 22 C 0.046 3.954 23 N -0.354 5.354 24 H 0.201 0.799 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.244 0.756 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -6.898 9.808 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.113 4.113 3 C 0.143 3.857 4 N -0.302 5.302 5 C -0.392 4.392 6 H 0.098 0.902 7 C -0.240 4.240 8 N -0.555 5.555 9 Si 0.787 3.213 10 H -0.212 1.212 11 H -0.237 1.237 12 H -0.190 1.190 13 C 0.086 3.914 14 C -0.180 4.180 15 C -0.139 4.139 16 N -0.246 5.246 17 C -0.058 4.058 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.125 4.125 21 C -0.167 4.167 22 C -0.076 4.076 23 N -0.025 5.025 24 H 0.218 0.782 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.191 0.809 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.194 0.806 35 H 0.198 0.802 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.207 -7.169 9.582 11.969 hybrid contribution 0.451 1.720 -0.265 1.798 sum 0.244 -5.449 9.317 10.796 Atomic orbital electron populations 1.24638 0.96105 1.07673 1.04190 1.24537 0.95845 0.94226 0.96674 1.17886 0.82354 0.99760 0.85710 1.44571 1.73591 1.02194 1.09869 1.19438 1.25059 0.84251 1.10486 0.90209 1.25570 0.96962 1.00429 1.01024 1.70323 1.22642 1.23954 1.38579 0.85421 0.77732 0.79725 0.78449 1.21227 1.23653 1.19032 1.19693 0.88937 0.88112 0.94651 1.23016 1.04613 1.04679 0.85686 1.22205 0.90200 1.02142 0.99353 1.70501 1.29150 1.23853 1.01094 1.21270 0.86051 1.00472 0.97958 1.19415 0.98808 1.00520 0.89393 1.20591 0.90394 1.01667 1.02240 1.21303 0.94652 0.96320 1.00239 1.21183 0.96724 1.02625 0.96147 1.21973 1.00337 0.95857 0.89444 1.42745 1.14972 1.32131 1.12698 0.78214 0.91024 0.90911 0.94658 0.91462 0.88503 0.80866 0.89764 0.88606 0.92929 0.80589 0.80185 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.85 19.25 74.32 1.43 -13.42 16 2 C -0.11 -5.40 10.97 31.12 0.34 -5.06 16 3 C 0.27 12.24 5.45 84.57 0.46 12.70 16 4 N -0.58 -26.49 2.49 -716.90 -1.79 -28.28 16 5 C -0.26 -13.00 9.66 84.03 0.81 -12.18 16 6 H 0.08 3.76 7.54 -2.91 -0.02 3.73 16 7 C -0.04 -2.25 4.85 84.86 0.41 -1.84 16 8 N -0.91 -51.62 9.49 21.65 0.21 -51.41 16 9 Si 0.96 42.77 29.61 68.60 2.03 44.80 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.31 -14.52 7.11 99.48 0.71 -13.82 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 13 C 0.21 8.06 6.13 85.63 0.52 8.59 16 14 C -0.06 -2.59 6.30 41.06 0.26 -2.33 16 15 C 0.01 0.49 11.44 83.71 0.96 1.45 16 16 N -0.53 -22.59 11.31 -194.34 -2.20 -24.79 16 17 C 0.19 7.47 7.52 134.11 1.01 8.48 16 18 C -0.08 -2.48 5.90 -19.72 -0.12 -2.59 16 19 C -0.09 -2.26 10.03 71.23 0.71 -1.54 16 20 C -0.10 -2.55 9.72 22.30 0.22 -2.34 16 21 C -0.15 -3.86 9.99 22.06 0.22 -3.64 16 22 C 0.05 1.57 10.85 83.21 0.90 2.47 16 23 N -0.35 -14.16 2.95 -338.87 -1.00 -15.15 16 24 H 0.20 8.66 7.80 -4.42 -0.03 8.62 16 25 H 0.07 3.64 6.43 -2.38 -0.02 3.62 16 26 H 0.07 2.77 7.97 -2.39 -0.02 2.75 16 27 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 29 H 0.10 3.10 7.95 -2.38 -0.02 3.08 16 30 H 0.17 6.53 8.06 -2.91 -0.02 6.51 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.74 8.09 -2.38 -0.02 1.72 16 33 H 0.05 1.52 8.10 -2.38 -0.02 1.50 16 34 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.16 5.22 7.70 -2.91 -0.02 5.20 16 Total: -1.00 -68.71 315.46 6.47 -62.24 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.07 Total: 23.85 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 8.14 Total: -11.26 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -4.78 Total: -119.63 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -68.71 6.47 -62.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333811381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.009 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds