Wall clock time and date at job start Mon Mar 30 2020 00:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00037 * 2 1 4 4 C 1.53001 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47153 * 54.99253 * 4 3 2 6 6 O 1.42903 * 109.46550 * 294.99651 * 4 3 2 7 7 C 1.42902 * 113.99542 * 150.00146 * 6 4 3 8 8 C 1.50697 * 109.47251 * 174.99915 * 4 3 2 9 9 O 1.21305 * 120.00005 * 114.99716 * 8 4 3 10 10 N 1.34779 * 119.99968 * 295.00004 * 8 4 3 11 11 C 1.40586 * 120.00116 * 180.02562 * 10 8 4 12 12 C 1.40657 * 126.08252 * 359.97039 * 11 10 8 13 13 N 1.30913 * 108.38554 * 179.77427 * 12 11 10 14 14 N 1.40060 * 108.40658 * 0.38728 * 13 12 11 15 15 C 1.37327 * 126.06997 * 179.87349 * 14 13 12 16 16 H 1.07998 * 120.00582 * 185.44908 * 15 14 13 17 17 C 1.38989 * 119.99638 * 5.17669 * 15 14 13 18 18 N 1.31295 * 120.00227 * 354.31128 * 17 15 14 19 19 Si 1.86794 * 119.99993 * 174.31104 * 17 15 14 20 20 H 1.48498 * 109.47527 * 94.97968 * 19 17 15 21 21 H 1.48507 * 109.47412 * 214.98035 * 19 17 15 22 22 H 1.48504 * 109.47189 * 334.98217 * 19 17 15 23 23 C 1.35681 * 126.08287 * 179.97438 * 11 10 8 24 24 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47359 * 300.00242 * 1 2 3 26 26 H 1.09004 * 109.47318 * 60.00177 * 1 2 3 27 27 H 1.08995 * 109.47273 * 59.99576 * 3 2 1 28 28 H 1.09008 * 109.46823 * 299.99918 * 3 2 1 29 29 H 1.09004 * 109.46959 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47040 * 299.99896 * 7 6 4 31 31 H 1.08997 * 109.47540 * 59.99870 * 7 6 4 32 32 H 0.97005 * 119.99650 * 359.97438 * 10 8 4 33 33 H 1.07991 * 125.80439 * 0.02562 * 12 11 10 34 34 H 0.96997 * 120.00133 * 179.97438 * 18 17 15 35 35 H 1.07998 * 126.24575 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8426 6 8 3.9658 0.5793 1.2202 7 6 5.1690 -0.1820 1.0989 8 6 4.1480 2.5560 -0.1245 9 8 4.8070 3.0105 0.7869 10 7 3.9634 3.2775 -1.2478 11 6 4.5352 4.5566 -1.3636 12 6 5.3184 5.2050 -0.3917 13 7 5.6735 6.3746 -0.8605 14 7 5.1262 6.5224 -2.1412 15 6 5.2699 7.6149 -2.9607 16 1 4.7323 7.6628 -3.8962 17 6 6.1028 8.6617 -2.5836 18 7 6.6644 8.6590 -1.3968 19 14 6.4234 10.0725 -3.7652 20 1 5.4831 11.1846 -3.4751 21 1 7.8200 10.5493 -3.5996 22 1 6.2219 9.6052 -5.1603 23 6 4.4298 5.3852 -2.4328 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 5.4282 -0.6087 2.0678 30 1 5.0198 -0.9848 0.3769 31 1 5.9766 0.4665 0.7593 32 1 3.4367 2.9139 -1.9767 33 1 5.5850 4.8043 0.5751 34 1 7.2460 9.3893 -1.1337 35 1 3.8922 5.1825 -3.3473 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333925825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:03 Heat of formation + Delta-G solvation = -34.596307 kcal Electronic energy + Delta-G solvation = -20329.341483 eV Core-core repulsion = 16944.452678 eV Total energy + Delta-G solvation = -3384.888805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.14992 -39.15720 -37.81464 -36.90289 -34.23320 -33.22578 -31.07281 -30.17323 -27.79915 -26.85275 -26.09226 -24.89064 -23.54999 -21.07115 -20.31882 -19.43407 -17.74640 -17.21139 -16.90786 -16.30746 -15.77265 -15.46634 -15.45217 -15.01063 -14.51023 -14.15933 -14.14070 -13.79323 -13.15518 -13.01317 -12.84758 -12.51415 -11.89557 -11.70785 -11.45490 -11.44036 -11.28150 -11.09935 -10.97899 -10.54003 -10.24809 -10.17271 -9.88094 -9.18397 -8.95280 -8.79435 -8.07576 -6.73072 -6.57605 -4.24579 2.66708 2.97545 3.04187 3.09797 3.27081 3.60612 3.69093 3.80394 3.97200 4.39898 4.72821 4.78317 4.90950 5.00007 5.11111 5.14926 5.21028 5.26860 5.34930 5.46929 5.49308 5.58467 5.76115 6.21914 6.42624 6.83149 6.90313 6.93409 7.00433 7.14338 7.22262 7.84410 8.13421 8.25256 8.60456 8.80456 9.36276 9.65243 10.38648 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.003817 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.489537 B = 7333.281924 C = 7867.369342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.070 3.930 4 C 0.082 3.918 5 H 0.091 0.909 6 O -0.351 6.351 7 C 0.031 3.969 8 C 0.476 3.524 9 O -0.514 6.514 10 N -0.622 5.622 11 C -0.062 4.062 12 C -0.032 4.032 13 N -0.261 5.261 14 N -0.142 5.142 15 C -0.324 4.324 16 H 0.116 0.884 17 C 0.047 3.953 18 N -0.769 5.769 19 Si 0.934 3.066 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.263 1.263 23 C -0.083 4.083 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.396 0.604 33 H 0.175 0.825 34 H 0.275 0.725 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 -13.589 -1.814 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.109 0.891 6 O -0.268 6.268 7 C -0.065 4.065 8 C 0.261 3.739 9 O -0.389 6.389 10 N -0.266 5.266 11 C -0.168 4.168 12 C -0.208 4.208 13 N -0.092 5.092 14 N 0.090 4.910 15 C -0.457 4.457 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.758 3.242 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.234 4.234 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.229 0.771 33 H 0.192 0.808 34 H 0.086 0.914 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.270 -12.206 -0.564 14.218 hybrid contribution -0.657 -0.164 -1.381 1.538 sum -7.927 -12.370 -1.946 14.820 Atomic orbital electron populations 1.22760 0.80775 1.02776 1.00223 1.87890 1.19813 1.27106 1.95489 1.22525 0.90692 0.85516 1.02006 1.21922 0.93597 0.92433 0.90062 0.89115 1.87989 1.42041 1.67020 1.29751 1.22839 0.86831 0.94289 1.02559 1.20794 0.83132 0.87076 0.82926 1.90624 1.39454 1.70040 1.38793 1.42592 1.51155 1.15513 1.17367 1.17281 1.12670 0.88173 0.98658 1.24111 1.02208 0.93795 1.00662 1.78258 1.21638 1.16742 0.92545 1.44556 1.27333 1.09128 1.09957 1.19877 1.29101 0.94985 1.01704 0.86597 1.25647 0.95560 0.99218 0.96643 1.70221 1.22703 1.29830 1.16773 0.85820 0.78445 0.79970 0.79961 1.19661 1.20034 1.18745 1.21258 1.10907 0.90789 1.00417 0.89551 0.93846 0.93942 0.91478 0.91253 0.89382 0.94039 0.93469 0.77085 0.80778 0.91443 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.53 10.67 -40.08 -0.43 -4.96 16 3 C 0.07 0.84 5.57 37.16 0.21 1.04 16 4 C 0.08 1.14 2.80 -27.88 -0.08 1.06 16 5 H 0.09 1.04 7.79 -51.93 -0.40 0.64 16 6 O -0.35 -5.43 9.85 -59.70 -0.59 -6.02 16 7 C 0.03 0.39 10.81 101.05 1.09 1.48 16 8 C 0.48 8.50 7.10 -10.99 -0.08 8.42 16 9 O -0.51 -11.43 13.66 -14.32 -0.20 -11.63 16 10 N -0.62 -10.87 5.37 -10.00 -0.05 -10.92 16 11 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 12 C -0.03 -0.86 10.85 -17.03 -0.18 -1.04 16 13 N -0.26 -7.62 10.42 30.80 0.32 -7.30 16 14 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 15 C -0.32 -8.56 10.24 -14.81 -0.15 -8.71 16 16 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 17 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 18 N -0.77 -21.51 11.83 55.50 0.66 -20.85 16 19 Si 0.93 18.83 29.55 -169.99 -5.02 13.81 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 23 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.68 7.77 -51.92 -0.40 0.27 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 5.19 8.53 -40.82 -0.35 4.85 16 33 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 309.82 15.07 4.67 4.67 Total: -1.00 -34.74 309.82 -4.02 -38.76 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.39 Total: 7.77 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 1.06 Total: 0.61 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.88 Total: -43.01 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.21 Total: -22.60 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.74 -4.02 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333925825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.166 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds