Wall clock time and date at job start Mon Mar 30 2020 00:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00037 * 2 1 4 4 C 1.53001 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47153 * 54.99253 * 4 3 2 6 6 O 1.42903 * 109.46550 * 294.99651 * 4 3 2 7 7 C 1.42902 * 113.99542 * 150.00146 * 6 4 3 8 8 C 1.50697 * 109.47251 * 174.99915 * 4 3 2 9 9 O 1.21305 * 120.00005 * 114.99716 * 8 4 3 10 10 N 1.34779 * 119.99968 * 295.00004 * 8 4 3 11 11 C 1.40586 * 120.00116 * 180.02562 * 10 8 4 12 12 C 1.40657 * 126.08252 * 359.97039 * 11 10 8 13 13 N 1.30913 * 108.38554 * 179.77427 * 12 11 10 14 14 N 1.40060 * 108.40658 * 0.38728 * 13 12 11 15 15 C 1.37327 * 126.06997 * 179.87349 * 14 13 12 16 16 H 1.07998 * 120.00582 * 185.44908 * 15 14 13 17 17 C 1.38989 * 119.99638 * 5.17669 * 15 14 13 18 18 N 1.31295 * 120.00227 * 354.31128 * 17 15 14 19 19 Si 1.86794 * 119.99993 * 174.31104 * 17 15 14 20 20 H 1.48498 * 109.47527 * 94.97968 * 19 17 15 21 21 H 1.48507 * 109.47412 * 214.98035 * 19 17 15 22 22 H 1.48504 * 109.47189 * 334.98217 * 19 17 15 23 23 C 1.35681 * 126.08287 * 179.97438 * 11 10 8 24 24 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47359 * 300.00242 * 1 2 3 26 26 H 1.09004 * 109.47318 * 60.00177 * 1 2 3 27 27 H 1.08995 * 109.47273 * 59.99576 * 3 2 1 28 28 H 1.09008 * 109.46823 * 299.99918 * 3 2 1 29 29 H 1.09004 * 109.46959 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47040 * 299.99896 * 7 6 4 31 31 H 1.08997 * 109.47540 * 59.99870 * 7 6 4 32 32 H 0.97005 * 119.99650 * 359.97438 * 10 8 4 33 33 H 1.07991 * 125.80439 * 0.02562 * 12 11 10 34 34 H 0.96997 * 120.00133 * 179.97438 * 18 17 15 35 35 H 1.07998 * 126.24575 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8426 6 8 3.9658 0.5793 1.2202 7 6 5.1690 -0.1820 1.0989 8 6 4.1480 2.5560 -0.1245 9 8 4.8070 3.0105 0.7869 10 7 3.9634 3.2775 -1.2478 11 6 4.5352 4.5566 -1.3636 12 6 5.3184 5.2050 -0.3917 13 7 5.6735 6.3746 -0.8605 14 7 5.1262 6.5224 -2.1412 15 6 5.2699 7.6149 -2.9607 16 1 4.7323 7.6628 -3.8962 17 6 6.1028 8.6617 -2.5836 18 7 6.6644 8.6590 -1.3968 19 14 6.4234 10.0725 -3.7652 20 1 5.4831 11.1846 -3.4751 21 1 7.8200 10.5493 -3.5996 22 1 6.2219 9.6052 -5.1603 23 6 4.4298 5.3852 -2.4328 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 5.4282 -0.6087 2.0678 30 1 5.0198 -0.9848 0.3769 31 1 5.9766 0.4665 0.7593 32 1 3.4367 2.9139 -1.9767 33 1 5.5850 4.8043 0.5751 34 1 7.2460 9.3893 -1.1337 35 1 3.8922 5.1825 -3.3473 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333925825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:03 Heat of formation + Delta-G solvation = -61.041165 kcal Electronic energy + Delta-G solvation = -20330.488218 eV Core-core repulsion = 16944.452678 eV Total energy + Delta-G solvation = -3386.035540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81305 -40.72849 -38.89729 -38.01051 -35.93780 -35.03051 -32.45418 -31.91107 -29.52137 -27.68646 -27.25341 -26.55395 -24.72458 -22.89805 -21.89220 -21.20562 -19.42331 -18.55250 -18.06168 -17.44193 -17.37326 -16.78553 -16.61293 -16.22898 -15.88100 -15.72951 -15.50296 -15.01791 -14.91766 -14.78503 -14.10119 -13.50160 -13.35187 -13.28240 -12.94018 -12.84422 -12.71538 -12.30758 -12.09945 -12.05956 -11.85122 -11.49345 -11.02962 -10.82468 -10.68045 -10.31904 -10.10874 -8.55371 -8.47496 -6.24807 1.15474 1.40437 1.44077 1.58996 1.82905 1.92602 2.18680 2.45657 2.70047 2.77520 3.01748 3.08918 3.79559 3.87804 3.96715 4.31875 4.39830 4.43939 4.53548 4.57573 4.60165 4.61055 4.64403 4.82963 4.91709 5.00542 5.05782 5.28730 5.42109 5.94216 5.98388 6.13282 6.30600 6.69113 6.73342 7.32039 7.46611 7.67259 8.52206 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.003817 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.489537 B = 7333.281924 C = 7867.369342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.074 3.926 4 C 0.090 3.910 5 H 0.123 0.877 6 O -0.376 6.376 7 C 0.026 3.974 8 C 0.477 3.523 9 O -0.562 6.562 10 N -0.608 5.608 11 C -0.047 4.047 12 C -0.060 4.060 13 N -0.312 5.312 14 N -0.168 5.168 15 C -0.355 4.355 16 H 0.143 0.857 17 C -0.007 4.007 18 N -0.825 5.825 19 Si 1.019 2.981 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.242 1.242 23 C -0.076 4.076 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.422 0.578 33 H 0.163 0.837 34 H 0.276 0.724 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 -14.808 -4.329 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.003 4.003 4 C 0.028 3.972 5 H 0.141 0.859 6 O -0.293 6.293 7 C -0.070 4.070 8 C 0.264 3.736 9 O -0.440 6.440 10 N -0.256 5.256 11 C -0.153 4.153 12 C -0.236 4.236 13 N -0.144 5.144 14 N 0.063 4.937 15 C -0.486 4.486 16 H 0.160 0.840 17 C -0.218 4.218 18 N -0.453 5.453 19 Si 0.838 3.162 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.165 1.165 23 C -0.226 4.226 24 H 0.121 0.879 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.259 0.741 33 H 0.180 0.820 34 H 0.086 0.914 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.032 -13.486 -3.108 16.526 hybrid contribution -0.204 0.033 -0.536 0.575 sum -9.236 -13.453 -3.644 16.720 Atomic orbital electron populations 1.22991 0.78945 1.04208 1.01058 1.87848 1.21743 1.26649 1.95638 1.22469 0.89225 0.86023 1.02626 1.21972 0.94695 0.89721 0.90782 0.85907 1.87972 1.43003 1.67318 1.31020 1.23010 0.85367 0.94354 1.04226 1.21699 0.81850 0.88237 0.81856 1.90613 1.41479 1.71440 1.40499 1.42488 1.51031 1.13564 1.18482 1.17341 1.10955 0.89876 0.97167 1.24129 1.03906 0.94269 1.01259 1.78157 1.23582 1.18259 0.94395 1.44858 1.28461 1.10678 1.09675 1.20648 1.29985 0.95345 1.02595 0.83972 1.26898 0.94587 1.02081 0.98256 1.70406 1.24190 1.31247 1.19470 0.84577 0.77881 0.75693 0.78034 1.18980 1.20344 1.16510 1.22030 1.09487 0.89346 1.01733 0.87911 0.93821 0.92299 0.92949 0.88611 0.88073 0.91308 0.95196 0.74071 0.81965 0.91424 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -8.28 10.67 -144.34 -1.54 -9.82 16 3 C 0.07 1.58 5.57 71.98 0.40 1.98 16 4 C 0.09 2.31 2.80 29.85 0.08 2.40 16 5 H 0.12 2.38 7.79 -2.39 -0.02 2.36 16 6 O -0.38 -11.18 9.85 -125.59 -1.24 -12.42 16 7 C 0.03 0.61 10.81 113.37 1.23 1.84 16 8 C 0.48 16.59 7.10 87.66 0.62 17.22 16 9 O -0.56 -25.60 13.66 15.88 0.22 -25.39 16 10 N -0.61 -20.09 5.37 -303.92 -1.63 -21.72 16 11 C -0.05 -2.14 6.90 37.73 0.26 -1.88 16 12 C -0.06 -3.33 10.85 85.42 0.93 -2.40 16 13 N -0.31 -18.94 10.42 -56.46 -0.59 -19.53 16 14 N -0.17 -9.25 3.74 -190.01 -0.71 -9.96 16 15 C -0.35 -18.61 10.24 84.01 0.86 -17.75 16 16 H 0.14 6.40 7.84 -2.91 -0.02 6.37 16 17 C -0.01 -0.34 5.50 84.95 0.47 0.12 16 18 N -0.83 -47.82 11.83 21.66 0.26 -47.57 16 19 Si 1.02 38.30 29.55 68.60 2.03 40.32 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 21 H -0.28 -10.44 7.11 99.48 0.71 -9.74 16 22 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 23 C -0.08 -3.41 11.49 83.37 0.96 -2.45 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.51 7.77 -2.38 -0.02 1.49 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.42 9.51 8.53 -92.70 -0.79 8.72 16 33 H 0.16 9.17 5.92 -2.91 -0.02 9.15 16 34 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.19 6.58 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -79.65 309.82 4.17 -75.48 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.32 Total: 29.96 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 7.05 Total: 0.65 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -2.67 Total: -98.78 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -2.56 Total: -47.63 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.32 kcal Total: -79.65 4.17 -75.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333925825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.434 kcal (2) G-P(sol) polarization free energy of solvation -79.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds