Wall clock time and date at job start Mon Mar 30 2020 00:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 N 1.46497 * 109.47302 * 179.97438 * 16 15 14 18 18 C 1.34771 * 124.17986 * 269.72394 * 17 16 15 19 19 O 1.21234 * 127.15227 * 0.02562 * 18 17 16 20 20 C 1.51582 * 105.68299 * 179.97438 * 18 17 16 21 21 N 1.47311 * 103.59623 * 0.32424 * 20 18 17 22 22 C 1.33801 * 124.17722 * 90.02099 * 17 16 15 23 23 O 1.21540 * 123.77018 * 359.96726 * 22 17 16 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 30 30 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 31 31 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 32 32 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 33 33 H 1.09003 * 110.76746 * 241.71006 * 20 18 17 34 34 H 1.09009 * 110.56130 * 118.83368 * 20 18 17 35 35 H 0.96995 * 126.68787 * 179.76588 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6859 -0.2183 -4.9000 17 7 2.1751 -0.9082 -6.0962 18 6 3.3355 -0.6170 -6.7167 19 8 4.1411 0.2326 -6.4020 20 6 3.4245 -1.5737 -7.8892 21 7 2.1841 -2.3618 -7.7879 22 6 1.5224 -1.9013 -6.7110 23 8 0.4506 -2.3372 -6.3391 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 3.2855 -0.9395 -3.6507 30 1 1.8325 -1.9678 -3.6511 31 1 0.5959 -0.2184 -4.9003 32 1 2.0492 0.8093 -4.8996 33 1 4.2978 -2.2193 -7.7958 34 1 3.4540 -1.0243 -8.8302 35 1 1.9000 -3.0742 -8.3818 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334033463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:41 Heat of formation + Delta-G solvation = -80.380584 kcal Electronic energy + Delta-G solvation = -20280.401475 eV Core-core repulsion = 16893.527316 eV Total energy + Delta-G solvation = -3386.874160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.61058 -38.86987 -38.80301 -36.38981 -35.86945 -33.73413 -33.67235 -30.68716 -29.07153 -27.91293 -25.10566 -24.15365 -23.17530 -22.04685 -20.77899 -19.36537 -18.29880 -17.52686 -16.99863 -16.29581 -16.05321 -15.77406 -15.59337 -14.94508 -14.85013 -14.49913 -14.39685 -14.25798 -13.82004 -13.47759 -12.86973 -12.49033 -12.31854 -11.68172 -11.34740 -11.28717 -10.99357 -10.69925 -10.64191 -10.56710 -10.23035 -10.13516 -9.93296 -9.87095 -8.94717 -8.62304 -8.49773 -8.30436 -6.00415 -4.03297 1.30642 1.82188 2.68217 2.77121 3.36423 3.41854 3.48939 3.60891 3.74234 3.95841 4.40924 4.50605 4.56258 4.75898 4.76859 5.16573 5.17735 5.28131 5.33009 5.83826 5.88689 6.28968 6.37072 6.65107 6.70991 6.86279 6.94180 7.00388 7.05059 7.50317 7.78416 7.78975 8.00665 8.15912 8.45087 9.05685 9.23683 9.62102 11.07278 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038445 B = 0.003582 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.145391 B = 7814.660582 C = 7934.444098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.522 3.478 13 O -0.544 6.544 14 N -0.744 5.744 15 C 0.108 3.892 16 C 0.109 3.891 17 N -0.573 5.573 18 C 0.519 3.481 19 O -0.463 6.463 20 C 0.063 3.937 21 N -0.730 5.730 22 C 0.700 3.300 23 O -0.535 6.535 24 H 0.093 0.907 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.397 0.603 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -1.366 -23.297 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.072 0.928 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.213 1.213 12 C 0.311 3.689 13 O -0.419 6.419 14 N -0.399 5.399 15 C -0.018 4.018 16 C -0.013 4.013 17 N -0.320 5.320 18 C 0.306 3.694 19 O -0.332 6.332 20 C -0.064 4.064 21 N -0.396 5.396 22 C 0.401 3.599 23 O -0.408 6.408 24 H 0.112 0.888 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.231 0.769 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.984 -1.686 -22.588 22.737 hybrid contribution -0.064 -0.371 0.404 0.552 sum 1.920 -2.058 -22.184 22.361 Atomic orbital electron populations 1.21748 0.96433 0.99893 1.00968 1.18884 0.94216 0.96879 0.89139 0.92839 1.21150 1.30966 1.12790 0.89004 0.90799 1.24951 0.95142 0.95060 0.99106 1.69872 1.37189 1.23076 1.23516 0.86445 0.79457 0.79236 0.82037 1.20677 1.19753 1.21301 1.22026 0.78354 0.84263 0.84225 1.90535 1.37889 1.26880 1.86644 1.46115 1.55857 1.32784 1.05183 1.21385 0.99537 0.96987 0.83904 1.21865 1.01580 0.96462 0.81347 1.46247 1.22304 1.35011 1.28403 1.20937 0.80539 0.83790 0.84149 1.90863 1.42209 1.32035 1.68059 1.22470 0.90096 0.94460 0.99411 1.45411 1.22432 1.40781 1.30953 1.15888 0.83783 0.79696 0.80583 1.91062 1.19982 1.61472 1.68263 0.88817 0.96846 0.94958 0.92976 0.76860 0.91719 0.91452 0.87769 0.87950 0.85747 0.85858 0.71410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.76 2.64 -92.93 -0.25 0.51 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.52 12.17 7.15 -10.99 -0.08 12.09 16 13 O -0.54 -14.65 15.46 5.56 0.09 -14.56 16 14 N -0.74 -13.06 5.45 -60.30 -0.33 -13.39 16 15 C 0.11 1.66 6.00 -4.04 -0.02 1.63 16 16 C 0.11 1.24 5.82 -4.04 -0.02 1.22 16 17 N -0.57 -6.03 2.60 -120.73 -0.31 -6.35 16 18 C 0.52 4.80 8.32 -10.55 -0.09 4.71 16 19 O -0.46 -5.77 17.75 5.60 0.10 -5.67 16 20 C 0.06 0.27 7.97 -4.32 -0.03 0.24 16 21 N -0.73 -4.32 6.58 -65.73 -0.43 -4.75 16 22 C 0.70 7.50 8.62 -88.01 -0.76 6.74 16 23 O -0.54 -7.90 17.48 5.33 0.09 -7.81 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.40 5.80 7.89 -40.82 -0.32 5.48 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.10 1.13 7.86 -51.93 -0.41 0.72 16 32 H 0.10 1.04 8.00 -51.93 -0.42 0.62 16 33 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.12 0.19 8.14 -51.92 -0.42 -0.23 16 35 H 0.44 1.50 8.96 -40.82 -0.37 1.14 16 LS Contribution 306.83 15.07 4.62 4.62 Total: -1.00 -36.72 306.83 -6.12 -42.84 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.25 Total: 1.54 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -1.31 Total: 11.21 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.45 Total: -49.28 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: 0.28 Total: -28.04 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.72 -6.12 -42.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334033463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.541 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds