Wall clock time and date at job start Mon Mar 30 2020 00:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46762 * 124.34850 * 2 1 4 4 C 1.54479 * 105.53509 * 163.21275 * 3 2 1 5 5 C 1.54623 * 101.76448 * 25.20998 * 4 3 2 6 6 H 1.09000 * 110.48720 * 216.52574 * 5 4 3 7 7 C 1.50698 * 110.59944 * 93.93354 * 5 4 3 8 8 O 1.21277 * 119.99995 * 3.71128 * 7 5 4 9 9 N 1.34780 * 120.00015 * 183.70636 * 7 5 4 10 10 C 1.46496 * 119.99942 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.47369 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99441 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00257 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00124 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99517 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00295 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00055 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47335 * 90.00170 * 18 16 14 20 20 H 1.48499 * 109.47138 * 210.00174 * 18 16 14 21 21 H 1.48503 * 109.47279 * 329.99951 * 18 16 14 22 22 C 1.34417 * 124.35094 * 179.82764 * 2 1 3 23 23 O 1.21283 * 124.94355 * 0.43141 * 22 2 1 24 24 H 1.08998 * 109.46843 * 180.19427 * 1 2 3 25 25 H 1.09000 * 109.46978 * 300.19813 * 1 2 3 26 26 H 1.09003 * 109.47376 * 60.19602 * 1 2 3 27 27 H 1.09004 * 110.38933 * 44.10688 * 3 2 1 28 28 H 1.08995 * 110.11843 * 282.18104 * 3 2 1 29 29 H 1.09006 * 110.97141 * 267.09046 * 4 3 2 30 30 H 1.09002 * 110.97085 * 143.33080 * 4 3 2 31 31 H 0.97006 * 119.99800 * 0.02562 * 9 7 5 32 32 H 1.09003 * 109.47029 * 299.99674 * 10 9 7 33 33 H 1.09004 * 109.47460 * 59.99911 * 10 9 7 34 34 H 0.96998 * 120.00391 * 359.97438 * 13 11 10 35 35 H 0.97006 * 119.99767 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7029 0.7493 0.4299 5 6 3.6898 -0.7377 0.0062 6 1 4.2359 -1.3449 0.7282 7 6 4.2783 -0.9018 -1.3714 8 8 4.7401 0.0578 -1.9517 9 7 4.2915 -2.1149 -1.9584 10 6 4.8640 -2.2745 -3.2974 11 6 4.7564 -3.7167 -3.7212 12 8 4.2507 -4.5310 -2.9780 13 7 5.2211 -4.1014 -4.9263 14 6 5.1227 -5.4133 -5.3121 15 1 4.6732 -6.1385 -4.6500 16 6 5.6014 -5.8099 -6.5548 17 7 6.1488 -4.9275 -7.3602 18 14 5.4679 -7.5975 -7.0801 19 1 4.1787 -7.8114 -7.7852 20 1 6.5919 -7.9309 -7.9916 21 1 5.5273 -8.4716 -5.8810 22 6 2.2234 -1.1097 0.0033 23 8 1.7946 -2.2442 -0.0007 24 1 -0.3633 -1.0277 0.0035 25 1 -0.3633 0.5169 0.8882 26 1 -0.3634 0.5108 -0.8917 27 1 1.9016 1.9392 0.7111 28 1 2.3263 1.6431 -1.0004 29 1 3.8337 0.8468 1.5077 30 1 4.4749 1.3010 -0.1067 31 1 3.9218 -2.8823 -1.4943 32 1 4.3195 -1.6466 -4.0026 33 1 5.9129 -1.9781 -3.2818 34 1 5.6246 -3.4500 -5.5212 35 1 6.4833 -5.2045 -8.2276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342731382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:59 Heat of formation + Delta-G solvation = -104.408961 kcal Electronic energy + Delta-G solvation = -20355.194148 eV Core-core repulsion = 16967.278040 eV Total energy + Delta-G solvation = -3387.916108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07680 -39.08250 -38.04971 -36.52957 -34.46501 -33.68147 -33.01696 -31.36020 -28.85851 -27.19003 -26.84910 -24.54210 -22.53494 -20.66860 -19.72459 -19.44654 -18.17576 -17.75088 -16.94789 -16.05360 -15.84730 -15.55914 -15.24496 -14.98121 -14.45015 -14.11930 -13.94494 -13.91733 -13.41875 -13.35097 -12.94580 -12.80707 -12.43168 -12.18646 -11.96325 -11.68083 -11.59560 -11.45906 -11.10524 -10.43615 -10.30153 -10.13205 -9.79999 -9.61351 -8.94556 -8.86147 -8.60615 -8.07841 -6.49510 -3.91223 2.21130 2.60239 2.87298 3.13823 3.23510 3.27549 3.35104 3.75947 4.05535 4.13367 4.20137 4.57482 4.80187 4.87930 4.94954 5.05691 5.14626 5.18778 5.25989 5.33852 5.50653 5.61887 5.79195 5.86109 5.93349 6.07600 6.24538 6.61425 6.81770 7.48469 7.70785 7.93514 7.94961 8.30601 8.47890 9.07074 9.41125 9.89652 10.67497 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.003762 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.723545 B = 7441.918145 C = 7841.765584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.622 5.622 3 C 0.102 3.898 4 C -0.117 4.117 5 C -0.149 4.149 6 H 0.134 0.866 7 C 0.529 3.471 8 O -0.541 6.541 9 N -0.698 5.698 10 C 0.108 3.892 11 C 0.427 3.573 12 O -0.591 6.591 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 C 0.525 3.475 23 O -0.511 6.511 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.418 0.582 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.396 0.604 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 13.929 13.431 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.357 5.357 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.173 4.173 6 H 0.152 0.848 7 C 0.312 3.688 8 O -0.420 6.420 9 N -0.351 5.351 10 C -0.019 4.019 11 C 0.212 3.788 12 O -0.477 6.477 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C 0.311 3.689 23 O -0.386 6.386 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.257 0.743 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.229 0.771 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.111 13.391 13.273 19.820 hybrid contribution 0.022 -0.756 -0.543 0.931 sum -6.089 12.635 12.730 18.941 Atomic orbital electron populations 1.21584 0.77664 1.04026 1.01528 1.48100 1.06704 1.07316 1.73625 1.22146 0.90273 0.87164 1.02546 1.22590 0.97716 0.92779 1.02443 1.22135 0.95927 1.01119 0.98139 0.84809 1.19620 0.79520 0.83167 0.86445 1.90678 1.47623 1.39034 1.64618 1.45750 1.60303 1.10919 1.18158 1.21004 0.99808 0.96943 0.84191 1.19731 0.85777 0.89007 0.84251 1.90535 1.49941 1.53535 1.53722 1.41778 1.51892 1.10570 1.14236 1.19749 1.37607 0.85024 1.00984 0.87657 1.25316 0.96363 1.00278 0.95750 1.69617 1.39326 1.34623 1.10058 0.85809 0.77861 0.81683 0.78664 1.20274 1.20809 1.19284 1.20357 0.88002 0.84718 0.75843 1.90807 1.77934 1.20637 1.49205 0.89718 0.91960 0.91895 0.90023 0.90498 0.89250 0.87028 0.74266 0.89791 0.89548 0.77072 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.14 59.85 0.67 1.48 16 2 N -0.62 -6.79 3.33 -180.29 -0.60 -7.39 16 3 C 0.10 0.83 7.35 -3.12 -0.02 0.81 16 4 C -0.12 -0.99 6.53 -25.10 -0.16 -1.16 16 5 C -0.15 -1.78 3.32 -91.78 -0.30 -2.09 16 6 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 7 C 0.53 8.29 7.19 -10.98 -0.08 8.21 16 8 O -0.54 -9.34 15.47 5.56 0.09 -9.25 16 9 N -0.70 -12.47 5.46 -61.47 -0.34 -12.81 16 10 C 0.11 2.06 6.15 -5.19 -0.03 2.02 16 11 C 0.43 10.17 7.85 -10.99 -0.09 10.08 16 12 O -0.59 -15.97 15.24 5.54 0.08 -15.88 16 13 N -0.55 -13.93 5.29 -10.96 -0.06 -13.99 16 14 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 15 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 18 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 C 0.53 7.33 7.24 -10.86 -0.08 7.25 16 23 O -0.51 -9.11 17.16 5.55 0.10 -9.02 16 24 H 0.08 0.86 7.53 -51.93 -0.39 0.47 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.11 1.02 6.92 -51.93 -0.36 0.66 16 31 H 0.42 7.99 7.22 -40.82 -0.29 7.70 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 308.01 15.07 4.64 4.64 Total: -1.00 -33.89 308.01 -4.99 -38.88 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.26 Total: 13.80 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: -0.34 Total: 18.61 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.27 Total: -57.63 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: 0.27 Total: -34.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.89 -4.99 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342731382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.533 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds