Wall clock time and date at job start Mon Mar 30 2020 00:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46762 * 124.34850 * 2 1 4 4 C 1.54479 * 105.53509 * 163.21275 * 3 2 1 5 5 C 1.54623 * 101.76448 * 25.20998 * 4 3 2 6 6 H 1.09000 * 110.48720 * 216.52574 * 5 4 3 7 7 C 1.50698 * 110.59944 * 93.93354 * 5 4 3 8 8 O 1.21277 * 119.99995 * 3.71128 * 7 5 4 9 9 N 1.34780 * 120.00015 * 183.70636 * 7 5 4 10 10 C 1.46496 * 119.99942 * 180.02562 * 9 7 5 11 11 C 1.50704 * 109.47369 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99441 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00257 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00124 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99517 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00295 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00055 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47335 * 90.00170 * 18 16 14 20 20 H 1.48499 * 109.47138 * 210.00174 * 18 16 14 21 21 H 1.48503 * 109.47279 * 329.99951 * 18 16 14 22 22 C 1.34417 * 124.35094 * 179.82764 * 2 1 3 23 23 O 1.21283 * 124.94355 * 0.43141 * 22 2 1 24 24 H 1.08998 * 109.46843 * 180.19427 * 1 2 3 25 25 H 1.09000 * 109.46978 * 300.19813 * 1 2 3 26 26 H 1.09003 * 109.47376 * 60.19602 * 1 2 3 27 27 H 1.09004 * 110.38933 * 44.10688 * 3 2 1 28 28 H 1.08995 * 110.11843 * 282.18104 * 3 2 1 29 29 H 1.09006 * 110.97141 * 267.09046 * 4 3 2 30 30 H 1.09002 * 110.97085 * 143.33080 * 4 3 2 31 31 H 0.97006 * 119.99800 * 0.02562 * 9 7 5 32 32 H 1.09003 * 109.47029 * 299.99674 * 10 9 7 33 33 H 1.09004 * 109.47460 * 59.99911 * 10 9 7 34 34 H 0.96998 * 120.00391 * 359.97438 * 13 11 10 35 35 H 0.97006 * 119.99767 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7029 0.7493 0.4299 5 6 3.6898 -0.7377 0.0062 6 1 4.2359 -1.3449 0.7282 7 6 4.2783 -0.9018 -1.3714 8 8 4.7401 0.0578 -1.9517 9 7 4.2915 -2.1149 -1.9584 10 6 4.8640 -2.2745 -3.2974 11 6 4.7564 -3.7167 -3.7212 12 8 4.2507 -4.5310 -2.9780 13 7 5.2211 -4.1014 -4.9263 14 6 5.1227 -5.4133 -5.3121 15 1 4.6732 -6.1385 -4.6500 16 6 5.6014 -5.8099 -6.5548 17 7 6.1488 -4.9275 -7.3602 18 14 5.4679 -7.5975 -7.0801 19 1 4.1787 -7.8114 -7.7852 20 1 6.5919 -7.9309 -7.9916 21 1 5.5273 -8.4716 -5.8810 22 6 2.2234 -1.1097 0.0033 23 8 1.7946 -2.2442 -0.0007 24 1 -0.3633 -1.0277 0.0035 25 1 -0.3633 0.5169 0.8882 26 1 -0.3634 0.5108 -0.8917 27 1 1.9016 1.9392 0.7111 28 1 2.3263 1.6431 -1.0004 29 1 3.8337 0.8468 1.5077 30 1 4.4749 1.3010 -0.1067 31 1 3.9218 -2.8823 -1.4943 32 1 4.3195 -1.6466 -4.0026 33 1 5.9129 -1.9781 -3.2818 34 1 5.6246 -3.4500 -5.5212 35 1 6.4833 -5.2045 -8.2276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342731382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:59 Heat of formation + Delta-G solvation = -131.728919 kcal Electronic energy + Delta-G solvation = -20356.378830 eV Core-core repulsion = 16967.278040 eV Total energy + Delta-G solvation = -3389.100791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.11704 -40.58056 -39.70233 -37.55771 -36.28255 -35.35483 -33.88255 -33.39872 -30.08075 -28.43460 -27.71184 -26.39822 -23.51177 -21.75558 -21.41434 -20.67910 -20.09141 -19.06454 -17.89645 -17.52826 -17.04845 -17.00026 -16.72494 -16.39960 -16.12442 -15.65831 -15.37018 -14.92494 -14.68822 -14.57476 -14.01393 -13.83644 -13.65166 -13.57112 -13.46941 -13.18134 -12.92933 -12.48793 -12.40871 -12.14560 -12.13714 -11.60259 -11.31376 -10.97486 -10.60719 -10.29406 -10.11601 -9.78160 -8.53616 -6.04008 1.09345 1.34441 1.41094 1.46963 1.54185 1.87219 1.94558 2.08509 2.30242 3.06100 3.13001 3.18465 3.39568 3.62257 3.95955 4.17613 4.21188 4.34029 4.35662 4.37532 4.44642 4.63121 4.69290 4.84167 5.00543 5.10988 5.19760 5.35890 5.47415 5.88720 5.93535 6.32831 6.46367 6.93314 6.98692 7.01367 7.40217 7.92125 8.63296 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.003762 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.723545 B = 7441.918145 C = 7841.765584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.097 3.903 4 C -0.107 4.107 5 C -0.146 4.146 6 H 0.151 0.849 7 C 0.530 3.470 8 O -0.556 6.556 9 N -0.709 5.709 10 C 0.121 3.879 11 C 0.427 3.573 12 O -0.626 6.626 13 N -0.557 5.557 14 C -0.340 4.340 15 H 0.083 0.917 16 C -0.008 4.008 17 N -0.914 5.914 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.268 1.268 21 H -0.271 1.271 22 C 0.513 3.487 23 O -0.563 6.563 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.412 0.588 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 15.522 14.110 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.351 5.351 3 C -0.024 4.024 4 C -0.145 4.145 5 C -0.171 4.171 6 H 0.169 0.831 7 C 0.316 3.684 8 O -0.435 6.435 9 N -0.362 5.362 10 C -0.006 4.006 11 C 0.215 3.785 12 O -0.514 6.514 13 N -0.192 5.192 14 C -0.470 4.470 15 H 0.101 0.899 16 C -0.209 4.209 17 N -0.554 5.554 18 Si 0.820 3.180 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.196 1.196 22 C 0.300 3.700 23 O -0.442 6.442 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.089 0.911 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.250 0.750 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.234 0.766 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.118 15.074 13.948 21.429 hybrid contribution -0.006 -1.153 -0.738 1.369 sum -6.125 13.921 13.210 20.145 Atomic orbital electron populations 1.21775 0.76526 1.03345 1.03743 1.48336 1.07720 1.07415 1.71660 1.22403 0.89926 0.86616 1.03484 1.22693 0.97711 0.89579 1.04511 1.22224 0.94674 1.04206 0.95957 0.83115 1.20204 0.78769 0.81949 0.87521 1.90667 1.48235 1.39142 1.65415 1.45879 1.60882 1.11692 1.17729 1.20843 1.01199 0.93287 0.85317 1.20494 0.84048 0.90735 0.83267 1.90509 1.51060 1.55282 1.54563 1.41811 1.52409 1.10090 1.14905 1.19734 1.39558 0.85894 1.01780 0.89890 1.26115 0.95304 1.04352 0.95111 1.69673 1.39089 1.36260 1.10387 0.84872 0.78395 0.76563 0.78174 1.19561 1.19298 1.19601 1.20712 0.89046 0.84674 0.75614 1.90775 1.78877 1.22710 1.51868 0.91894 0.88733 0.90609 0.86070 0.91099 0.85766 0.87365 0.75030 0.88711 0.87788 0.76573 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.14 127.77 1.42 2.78 16 2 N -0.62 -12.32 3.33 -842.91 -2.81 -15.13 16 3 C 0.10 1.28 7.35 86.83 0.64 1.91 16 4 C -0.11 -1.47 6.53 31.65 0.21 -1.26 16 5 C -0.15 -3.29 3.32 -11.55 -0.04 -3.33 16 6 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 7 C 0.53 16.15 7.19 87.66 0.63 16.78 16 8 O -0.56 -18.41 15.47 -3.02 -0.05 -18.46 16 9 N -0.71 -25.42 5.46 -466.78 -2.55 -27.97 16 10 C 0.12 4.60 6.15 85.64 0.53 5.13 16 11 C 0.43 20.83 7.85 87.66 0.69 21.52 16 12 O -0.63 -34.97 15.24 -3.08 -0.05 -35.01 16 13 N -0.56 -28.83 5.29 -306.98 -1.62 -30.45 16 14 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 15 H 0.08 5.01 7.16 -2.91 -0.02 4.98 16 16 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 17 N -0.91 -49.02 13.05 21.66 0.28 -48.74 16 18 Si 1.00 42.61 29.55 68.60 2.03 44.64 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C 0.51 14.03 7.24 87.90 0.64 14.66 16 23 O -0.56 -20.66 17.16 -3.04 -0.05 -20.72 16 24 H 0.06 1.28 7.53 -2.39 -0.02 1.26 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.12 0.70 8.14 -2.38 -0.02 0.69 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.12 0.88 8.14 -2.38 -0.02 0.87 16 30 H 0.11 1.64 6.92 -2.39 -0.02 1.63 16 31 H 0.41 16.18 7.22 -92.70 -0.67 15.51 16 32 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.10 3.59 8.14 -2.39 -0.02 3.58 16 34 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 35 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -74.85 308.01 0.91 -73.93 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.26 Total: 38.18 kcal Atomic # 6 Polarization: 33.74 SS G_CDS: 5.99 Total: 39.73 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.70 Total: -122.29 kcal Atomic # 8 Polarization: -74.04 SS G_CDS: -0.15 Total: -74.19 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.85 0.91 -73.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342731382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.798 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds