Wall clock time and date at job start Mon Mar 30 2020 00:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 6 6 N 1.31129 * 126.54729 * 89.71240 * 5 4 3 7 7 C 1.34497 * 105.60849 * 179.91609 * 6 5 4 8 8 C 1.50703 * 126.28293 * 180.12449 * 7 6 5 9 9 H 1.09000 * 109.47612 * 345.24129 * 8 7 6 10 10 C 1.53007 * 109.46747 * 105.24343 * 8 7 6 11 11 N 1.46496 * 109.47140 * 225.23645 * 8 7 6 12 12 C 1.34776 * 120.00093 * 154.99954 * 11 8 7 13 13 O 1.21690 * 119.99796 * 0.02562 * 12 11 8 14 14 C 1.46369 * 120.00474 * 180.02562 * 12 11 8 15 15 H 1.08001 * 119.99793 * 0.02562 * 14 12 11 16 16 C 1.40055 * 120.00490 * 180.02562 * 14 12 11 17 17 N 1.30667 * 119.99514 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00063 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47252 * 90.00142 * 18 16 14 20 20 H 1.48504 * 109.47153 * 210.00119 * 18 16 14 21 21 H 1.48502 * 109.47194 * 329.99896 * 18 16 14 22 22 N 1.29942 * 107.42634 * 0.35011 * 7 6 5 23 23 O 1.21295 * 110.25076 * 359.78187 * 22 7 6 24 24 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 25 25 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 27 27 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 28 28 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 29 29 H 1.09001 * 109.47103 * 300.00246 * 4 3 2 30 30 H 1.09004 * 109.47054 * 59.99750 * 4 3 2 31 31 H 1.09001 * 109.46733 * 299.99334 * 10 8 7 32 32 H 1.08997 * 109.47344 * 60.00066 * 10 8 7 33 33 H 1.08998 * 109.47039 * 180.02562 * 10 8 7 34 34 H 0.97006 * 120.00520 * 335.00923 * 11 8 7 35 35 H 0.97000 * 120.00068 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 7 4.0152 3.6727 1.0530 7 6 4.3435 4.8850 0.5718 8 6 4.6692 6.1098 1.3871 9 1 4.3517 5.9550 2.4183 10 6 6.1781 6.3606 1.3502 11 7 3.9679 7.2686 0.8289 12 6 3.6809 8.3253 1.6147 13 8 4.0047 8.3171 2.7877 14 6 2.9797 9.4829 1.0572 15 1 2.6919 9.4901 0.0163 16 6 2.6819 10.5813 1.8736 17 7 3.0305 10.5728 3.1329 18 14 1.7865 12.0582 1.1623 19 1 0.3213 11.8670 1.3098 20 1 2.2011 13.2854 1.8885 21 1 2.1252 12.1965 -0.2769 22 7 4.3235 4.8073 -0.7252 23 8 4.0247 3.6847 -1.0740 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9767 0.8908 30 1 3.8340 0.9764 -0.8892 31 1 6.6999 5.4984 1.7655 32 1 6.4956 6.5155 0.3190 33 1 6.4137 7.2462 1.9402 34 1 3.7099 7.2754 -0.1062 35 1 2.8240 11.3333 3.6985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347540401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:37 Heat of formation + Delta-G solvation = -16.984243 kcal Electronic energy + Delta-G solvation = -20008.659237 eV Core-core repulsion = 16624.534149 eV Total energy + Delta-G solvation = -3384.125088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.52714 -38.53489 -37.79938 -35.92505 -34.23975 -32.74189 -32.24605 -31.24576 -29.61643 -27.58011 -26.15346 -24.69452 -23.18737 -23.08969 -21.10222 -19.30320 -18.22099 -17.98158 -16.97081 -16.84526 -16.51168 -15.82225 -15.36741 -14.83474 -14.20263 -13.98127 -13.42289 -13.33804 -13.18773 -12.80974 -12.44785 -12.34542 -11.99415 -11.76222 -11.68643 -11.67469 -11.33157 -11.11415 -11.10013 -10.96579 -10.68769 -10.47344 -10.23011 -10.12064 -9.90632 -8.86462 -7.68894 -7.65003 -6.20457 -4.65948 1.07457 2.23917 2.64123 3.15204 3.21776 3.25575 3.43458 3.74664 4.10926 4.16843 4.56687 4.58130 4.66092 4.74366 4.85199 4.96768 4.98849 5.15537 5.32519 5.56660 5.57834 5.67081 5.80994 5.85111 5.93597 6.01580 6.18604 6.45406 6.63862 6.71200 7.42880 7.83681 7.98493 8.27337 8.30201 9.00973 9.45472 10.56346 10.74187 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.003819 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.440739 B = 7329.945228 C = 7923.442947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.381 6.381 4 C 0.164 3.836 5 C 0.163 3.837 6 N -0.451 5.451 7 C 0.180 3.820 8 C 0.241 3.759 9 H 0.107 0.893 10 C -0.152 4.152 11 N -0.758 5.758 12 C 0.557 3.443 13 O -0.576 6.576 14 C -0.542 4.542 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.766 5.766 18 Si 0.910 3.090 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 N -0.369 5.369 23 O 0.087 5.913 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.385 0.615 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -20.278 -7.825 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.300 6.300 4 C 0.086 3.914 5 C -0.058 4.058 6 N -0.187 5.187 7 C -0.094 4.094 8 C 0.132 3.868 9 H 0.125 0.875 10 C -0.211 4.211 11 N -0.415 5.415 12 C 0.362 3.638 13 O -0.459 6.459 14 C -0.579 4.579 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.395 5.395 18 Si 0.734 3.266 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.189 1.189 22 N -0.074 5.074 23 O 0.025 5.975 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.217 0.783 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.139 -19.243 -6.844 20.425 hybrid contribution -0.494 0.303 -0.895 1.066 sum -0.355 -18.940 -7.738 20.463 Atomic orbital electron populations 1.21762 0.93223 1.02454 1.03660 1.22557 0.96054 0.82420 1.00628 1.87998 1.18612 1.27750 1.95611 1.20447 0.83506 0.83553 1.03915 1.28171 0.98712 0.97625 0.81332 1.71884 1.16403 1.01639 1.28727 1.26393 0.98970 0.95858 0.88158 1.18787 0.93074 0.78969 0.95947 0.87480 1.22163 0.94219 1.02524 1.02221 1.46289 1.64434 1.17156 1.13603 1.18245 0.79108 0.81219 0.85210 1.90605 1.57568 1.80921 1.16798 1.20852 1.39330 1.00399 0.97321 0.91345 1.25707 0.94222 0.98982 0.94337 1.70015 1.35260 1.28954 1.05224 0.86336 0.79914 0.80480 0.79834 1.19712 1.20400 1.18869 1.74609 1.18833 0.97966 1.16008 1.85292 1.61622 1.14987 1.35558 0.91615 0.90757 0.91517 0.92718 0.92657 0.88447 0.89364 0.92761 0.92735 0.90141 0.78333 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.38 -4.07 10.33 -35.23 -0.36 -4.43 16 4 C 0.16 1.45 6.56 36.01 0.24 1.69 16 5 C 0.16 2.27 8.14 -13.06 -0.11 2.16 16 6 N -0.45 -7.80 11.55 -9.88 -0.11 -7.91 16 7 C 0.18 3.39 7.01 -156.37 -1.10 2.30 16 8 C 0.24 5.08 3.12 -69.08 -0.22 4.87 16 9 H 0.11 2.48 7.58 -51.93 -0.39 2.09 16 10 C -0.15 -2.84 9.47 37.16 0.35 -2.48 16 11 N -0.76 -18.20 5.06 -56.34 -0.29 -18.48 16 12 C 0.56 16.20 7.71 -12.99 -0.10 16.10 16 13 O -0.58 -18.65 14.68 5.20 0.08 -18.58 16 14 C -0.54 -15.68 9.54 -35.63 -0.34 -16.02 16 15 H 0.07 1.84 7.85 -52.49 -0.41 1.42 16 16 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 18 Si 0.91 20.48 29.56 -169.99 -5.02 15.46 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 22 N -0.37 -6.59 11.86 30.89 0.37 -6.22 16 23 O 0.09 1.31 11.31 18.12 0.20 1.52 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 34 H 0.38 8.66 8.34 -40.82 -0.34 8.32 16 35 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -35.90 314.96 -4.98 -40.88 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.51 Total: 4.48 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -0.74 Total: 11.01 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.62 Total: -55.08 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.08 Total: -21.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.90 -4.98 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347540401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.895 kcal (2) G-P(sol) polarization free energy of solvation -35.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds