Wall clock time and date at job start Mon Mar 30 2020 00:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 6 6 N 1.31129 * 126.54729 * 89.71240 * 5 4 3 7 7 C 1.34497 * 105.60849 * 179.91609 * 6 5 4 8 8 C 1.50703 * 126.28293 * 180.12449 * 7 6 5 9 9 H 1.09000 * 109.47612 * 345.24129 * 8 7 6 10 10 C 1.53007 * 109.46747 * 105.24343 * 8 7 6 11 11 N 1.46496 * 109.47140 * 225.23645 * 8 7 6 12 12 C 1.34776 * 120.00093 * 154.99954 * 11 8 7 13 13 O 1.21690 * 119.99796 * 0.02562 * 12 11 8 14 14 C 1.46369 * 120.00474 * 180.02562 * 12 11 8 15 15 H 1.08001 * 119.99793 * 0.02562 * 14 12 11 16 16 C 1.40055 * 120.00490 * 180.02562 * 14 12 11 17 17 N 1.30667 * 119.99514 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00063 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47252 * 90.00142 * 18 16 14 20 20 H 1.48504 * 109.47153 * 210.00119 * 18 16 14 21 21 H 1.48502 * 109.47194 * 329.99896 * 18 16 14 22 22 N 1.29942 * 107.42634 * 0.35011 * 7 6 5 23 23 O 1.21295 * 110.25076 * 359.78187 * 22 7 6 24 24 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 25 25 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 27 27 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 28 28 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 29 29 H 1.09001 * 109.47103 * 300.00246 * 4 3 2 30 30 H 1.09004 * 109.47054 * 59.99750 * 4 3 2 31 31 H 1.09001 * 109.46733 * 299.99334 * 10 8 7 32 32 H 1.08997 * 109.47344 * 60.00066 * 10 8 7 33 33 H 1.08998 * 109.47039 * 180.02562 * 10 8 7 34 34 H 0.97006 * 120.00520 * 335.00923 * 11 8 7 35 35 H 0.97000 * 120.00068 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 7 4.0152 3.6727 1.0530 7 6 4.3435 4.8850 0.5718 8 6 4.6692 6.1098 1.3871 9 1 4.3517 5.9550 2.4183 10 6 6.1781 6.3606 1.3502 11 7 3.9679 7.2686 0.8289 12 6 3.6809 8.3253 1.6147 13 8 4.0047 8.3171 2.7877 14 6 2.9797 9.4829 1.0572 15 1 2.6919 9.4901 0.0163 16 6 2.6819 10.5813 1.8736 17 7 3.0305 10.5728 3.1329 18 14 1.7865 12.0582 1.1623 19 1 0.3213 11.8670 1.3098 20 1 2.2011 13.2854 1.8885 21 1 2.1252 12.1965 -0.2769 22 7 4.3235 4.8073 -0.7252 23 8 4.0247 3.6847 -1.0740 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9767 0.8908 30 1 3.8340 0.9764 -0.8892 31 1 6.6999 5.4984 1.7655 32 1 6.4956 6.5155 0.3190 33 1 6.4137 7.2462 1.9402 34 1 3.7099 7.2754 -0.1062 35 1 2.8240 11.3333 3.6985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347540401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:36 Heat of formation + Delta-G solvation = -46.687231 kcal Electronic energy + Delta-G solvation = -20009.947255 eV Core-core repulsion = 16624.534149 eV Total energy + Delta-G solvation = -3385.413106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.84810 -39.82017 -39.20057 -37.50139 -35.85602 -34.63727 -33.78276 -32.07481 -31.42272 -28.46008 -28.27798 -26.21242 -24.41627 -23.69577 -22.76941 -21.16370 -19.75911 -19.43852 -18.53109 -17.63743 -17.51040 -17.17402 -17.01837 -16.28896 -16.06029 -15.25706 -15.11477 -14.60508 -14.42041 -14.04010 -13.78059 -13.58009 -13.45322 -13.27202 -12.96053 -12.80635 -12.75548 -12.68966 -12.51635 -12.34743 -12.23563 -12.14159 -12.03305 -11.22858 -10.96905 -10.69158 -9.96411 -9.73543 -8.34586 -6.92535 -0.09153 0.89084 1.38499 1.39927 1.55632 1.61587 2.17013 2.29202 2.41131 2.71842 2.86563 3.19496 3.53435 3.71286 4.03444 4.13551 4.21650 4.24327 4.31292 4.36054 4.45477 4.56885 4.59002 4.77715 4.83861 4.86332 5.07135 5.11262 5.27168 5.30349 5.77399 5.97122 6.07784 6.15730 6.80876 6.99318 7.36128 8.38188 8.60299 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.003819 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.440739 B = 7329.945228 C = 7923.442947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.054 3.946 3 O -0.416 6.416 4 C 0.162 3.838 5 C 0.184 3.816 6 N -0.480 5.480 7 C 0.163 3.837 8 C 0.240 3.760 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.750 5.750 12 C 0.544 3.456 13 O -0.621 6.621 14 C -0.573 4.573 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.816 5.816 18 Si 1.001 2.999 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.251 1.251 22 N -0.379 5.379 23 O 0.100 5.900 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.392 0.608 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -21.601 -9.794 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.021 4.021 3 O -0.336 6.336 4 C 0.085 3.915 5 C -0.037 4.037 6 N -0.215 5.215 7 C -0.110 4.110 8 C 0.133 3.867 9 H 0.096 0.904 10 C -0.199 4.199 11 N -0.405 5.405 12 C 0.349 3.651 13 O -0.507 6.507 14 C -0.609 4.609 15 H 0.102 0.898 16 C -0.186 4.186 17 N -0.445 5.445 18 Si 0.819 3.181 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.174 1.174 22 N -0.083 5.083 23 O 0.036 5.964 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.310 -20.611 -8.836 22.427 hybrid contribution -0.374 0.515 -0.312 0.709 sum -0.684 -20.096 -9.148 22.091 Atomic orbital electron populations 1.21822 0.93690 1.03594 1.02276 1.22804 0.95731 0.80954 1.02629 1.87941 1.19376 1.30263 1.96016 1.20941 0.83282 0.80164 1.07148 1.29207 0.95851 0.98873 0.79818 1.71860 1.17918 1.01500 1.30186 1.25845 1.00933 0.95787 0.88465 1.18685 0.94111 0.79136 0.94780 0.90392 1.22021 0.92761 1.02504 1.02587 1.45961 1.63973 1.17122 1.13440 1.18567 0.79046 0.82493 0.85010 1.90559 1.59400 1.82124 1.18661 1.21376 1.39963 1.01183 0.98397 0.89797 1.26972 0.94594 1.02533 0.94456 1.70164 1.36553 1.30598 1.07217 0.84980 0.78327 0.75347 0.79402 1.18632 1.19328 1.17390 1.74576 1.18997 0.99351 1.15359 1.85263 1.61100 1.14350 1.35709 0.92570 0.88376 0.93319 0.90114 0.91143 0.86243 0.85006 0.89934 0.91613 0.92807 0.77455 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.58 6.66 71.98 0.48 1.05 16 3 O -0.42 -7.89 10.33 -148.98 -1.54 -9.43 16 4 C 0.16 2.33 6.56 71.24 0.47 2.80 16 5 C 0.18 4.74 8.14 88.38 0.72 5.46 16 6 N -0.48 -16.31 11.55 -303.24 -3.50 -19.82 16 7 C 0.16 6.16 7.01 138.46 0.97 7.13 16 8 C 0.24 10.50 3.12 44.25 0.14 10.64 16 9 H 0.08 3.84 7.58 -2.39 -0.02 3.82 16 10 C -0.14 -5.31 9.47 71.98 0.68 -4.63 16 11 N -0.75 -37.12 5.06 -450.39 -2.28 -39.40 16 12 C 0.54 32.81 7.71 86.36 0.67 33.47 16 13 O -0.62 -42.21 14.68 -4.32 -0.06 -42.27 16 14 C -0.57 -33.70 9.54 24.83 0.24 -33.46 16 15 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 16 C 0.03 1.72 5.50 85.31 0.47 2.19 16 17 N -0.82 -50.51 11.83 21.84 0.26 -50.26 16 18 Si 1.00 41.88 29.56 68.60 2.03 43.91 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 22 N -0.38 -13.22 11.86 -60.36 -0.72 -13.94 16 23 O 0.10 2.85 11.31 74.90 0.85 3.69 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.39 18.00 8.34 -92.70 -0.77 17.23 16 35 H 0.28 15.44 8.29 -92.71 -0.77 14.67 16 Total: -1.00 -81.41 314.96 0.94 -80.46 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.34 Total: 23.49 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 5.57 Total: 23.56 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -6.24 Total: -123.41 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.76 Total: -48.01 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -81.41 0.94 -80.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347540401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.777 kcal (2) G-P(sol) polarization free energy of solvation -81.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds