Wall clock time and date at job start Mon Mar 30 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47133 * 2 1 4 4 C 1.42896 * 113.99939 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47170 * 180.02562 * 4 3 2 6 6 N 1.31128 * 126.55019 * 90.00171 * 5 4 3 7 7 C 1.34500 * 105.61613 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.28605 * 179.97438 * 7 6 5 9 9 H 1.08993 * 109.47304 * 15.00149 * 8 7 6 10 10 C 1.53006 * 109.47184 * 255.00205 * 8 7 6 11 11 N 1.46500 * 109.46840 * 135.00491 * 8 7 6 12 12 C 1.34773 * 119.99910 * 204.99595 * 11 8 7 13 13 O 1.21683 * 120.00267 * 0.02562 * 12 11 8 14 14 C 1.46383 * 119.99941 * 179.97438 * 12 11 8 15 15 H 1.08004 * 119.99733 * 0.02562 * 14 12 11 16 16 C 1.40047 * 120.00125 * 180.02562 * 14 12 11 17 17 N 1.30678 * 119.99847 * 359.97438 * 16 14 12 18 18 Si 1.86790 * 120.00231 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47113 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47478 * 119.99717 * 18 16 14 21 21 H 1.48497 * 109.47418 * 240.00067 * 18 16 14 22 22 N 1.29944 * 107.42179 * 0.24589 * 7 6 5 23 23 O 1.21301 * 110.25537 * 359.57652 * 22 7 6 24 24 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47448 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.47533 * 60.00104 * 1 2 3 27 27 H 1.08997 * 109.46829 * 240.00144 * 2 1 3 28 28 H 1.09000 * 109.47110 * 120.00537 * 2 1 3 29 29 H 1.09006 * 109.47117 * 60.00553 * 4 3 2 30 30 H 1.08991 * 109.47681 * 300.00524 * 4 3 2 31 31 H 1.09000 * 109.47050 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46801 * 300.00442 * 10 8 7 33 33 H 1.09001 * 109.46998 * 60.00038 * 10 8 7 34 34 H 0.97003 * 119.99995 * 25.00470 * 11 8 7 35 35 H 0.96993 * 120.00015 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9161 0.0012 6 7 4.0204 3.6703 1.0549 7 6 4.3451 4.8840 0.5748 8 6 4.6712 6.1080 1.3912 9 1 4.8673 5.8152 2.4226 10 6 3.4878 7.0771 1.3524 11 7 5.8577 6.7636 0.8356 12 6 6.6313 7.5366 1.6231 13 8 6.3446 7.6897 2.7958 14 6 7.8172 8.1912 1.0682 15 1 8.0719 8.0550 0.0275 16 6 8.6215 8.9941 1.8866 17 7 8.3130 9.1593 3.1457 18 14 10.1343 9.8300 1.1783 19 1 10.2618 9.4859 -0.2607 20 1 10.0015 11.3017 1.3259 21 1 11.3426 9.3665 1.9065 22 7 4.3202 4.8088 -0.7222 23 8 4.0255 3.6853 -1.0721 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8339 0.9765 -0.8893 30 1 3.8333 0.9767 0.8907 31 1 3.7239 7.9626 1.9425 32 1 3.2917 7.3699 0.3209 33 1 2.6050 6.5893 1.7657 34 1 6.0864 6.6413 -0.0991 35 1 8.8701 9.7151 3.7126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347540402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:38 Heat of formation + Delta-G solvation = -17.297766 kcal Electronic energy + Delta-G solvation = -19952.056956 eV Core-core repulsion = 16567.918273 eV Total energy + Delta-G solvation = -3384.138684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.52552 -38.56104 -37.80790 -35.92880 -34.24627 -32.75544 -32.26100 -31.27275 -29.61506 -27.58791 -26.16279 -24.69402 -23.22404 -23.09304 -21.10781 -19.30986 -18.20213 -18.00976 -17.03494 -16.80927 -16.53487 -15.83512 -15.38278 -14.83532 -14.20653 -14.00289 -13.45188 -13.33101 -13.20383 -12.85220 -12.46100 -12.35539 -12.00327 -11.78670 -11.74356 -11.67989 -11.30055 -11.11694 -11.09689 -10.98525 -10.69602 -10.49474 -10.21379 -10.14667 -9.90831 -8.88545 -7.69966 -7.65903 -6.21837 -4.67234 1.07321 2.25237 2.61353 3.12650 3.20823 3.25617 3.41003 3.75214 4.09838 4.16609 4.55468 4.58051 4.63276 4.73119 4.82465 4.95402 4.97138 5.15758 5.28409 5.51765 5.58132 5.66839 5.74900 5.85433 5.93569 6.02026 6.20463 6.45732 6.60411 6.71986 7.41749 7.82581 7.97263 8.27050 8.29341 8.99822 9.44406 10.55097 10.72953 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044934 B = 0.003339 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.979984 B = 8383.126085 C = 8599.286045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.382 6.382 4 C 0.164 3.836 5 C 0.164 3.836 6 N -0.452 5.452 7 C 0.180 3.820 8 C 0.241 3.759 9 H 0.108 0.892 10 C -0.152 4.152 11 N -0.758 5.758 12 C 0.557 3.443 13 O -0.576 6.576 14 C -0.541 4.541 15 H 0.069 0.931 16 C 0.087 3.913 17 N -0.766 5.766 18 Si 0.909 3.091 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.276 1.276 22 N -0.369 5.369 23 O 0.087 5.913 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.385 0.615 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 -17.385 -7.857 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.301 6.301 4 C 0.086 3.914 5 C -0.058 4.058 6 N -0.187 5.187 7 C -0.094 4.094 8 C 0.132 3.868 9 H 0.125 0.875 10 C -0.212 4.212 11 N -0.415 5.415 12 C 0.362 3.638 13 O -0.459 6.459 14 C -0.578 4.578 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.395 5.395 18 Si 0.734 3.266 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.074 5.074 23 O 0.025 5.975 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.217 0.783 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.116 -16.250 -6.878 20.855 hybrid contribution 0.935 -0.065 -0.887 1.290 sum -10.181 -16.314 -7.764 20.738 Atomic orbital electron populations 1.21758 0.93266 1.02480 1.03519 1.22558 0.95973 0.82450 1.00735 1.87964 1.18724 1.27765 1.95643 1.20450 0.83338 0.83593 1.04064 1.28147 0.98624 0.97671 0.81339 1.71880 1.16622 1.01474 1.28714 1.26385 0.99107 0.95689 0.88171 1.18784 0.88277 0.83770 0.95925 0.87461 1.22165 0.96470 1.00299 1.02244 1.46293 1.27117 1.54453 1.13627 1.18260 0.82615 0.77751 0.85196 1.90606 1.73632 1.64779 1.16846 1.20885 1.08815 1.30812 0.97327 0.91298 1.25712 0.98130 0.95108 0.94332 1.70027 1.34734 1.29516 1.05188 0.86285 0.81205 0.79167 0.79940 1.18760 1.20090 1.20131 1.74612 1.18786 0.98034 1.15987 1.85297 1.61646 1.14964 1.35561 0.90745 0.91595 0.91669 0.92677 0.92613 0.89289 0.88386 0.90137 0.92746 0.92714 0.78338 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.38 -3.82 10.33 -35.23 -0.36 -4.18 16 4 C 0.16 1.45 6.56 36.00 0.24 1.68 16 5 C 0.16 2.27 8.14 -13.06 -0.11 2.17 16 6 N -0.45 -7.79 11.55 -9.86 -0.11 -7.91 16 7 C 0.18 3.40 7.01 -156.37 -1.10 2.30 16 8 C 0.24 5.09 3.12 -69.08 -0.22 4.87 16 9 H 0.11 2.48 7.58 -51.93 -0.39 2.08 16 10 C -0.15 -2.90 9.47 37.16 0.35 -2.55 16 11 N -0.76 -18.01 5.06 -56.34 -0.29 -18.30 16 12 C 0.56 16.06 7.71 -12.98 -0.10 15.96 16 13 O -0.58 -18.56 14.68 5.20 0.08 -18.48 16 14 C -0.54 -15.52 9.54 -35.63 -0.34 -15.86 16 15 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 16 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 17 N -0.77 -23.00 11.83 55.55 0.66 -22.35 16 18 Si 0.91 20.33 29.56 -169.99 -5.02 15.30 16 19 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 N -0.37 -6.59 11.87 30.90 0.37 -6.22 16 23 O 0.09 1.31 11.31 18.09 0.20 1.52 16 24 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.38 8.53 8.34 -40.82 -0.34 8.19 16 35 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -35.55 314.97 -4.98 -40.53 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.51 Total: 4.31 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -0.74 Total: 11.04 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.62 Total: -54.78 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.08 Total: -21.15 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.55 -4.98 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347540402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.234 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds