Wall clock time and date at job start Mon Mar 30 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42899 * 109.47133 * 2 1 4 4 C 1.42896 * 113.99939 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47170 * 180.02562 * 4 3 2 6 6 N 1.31128 * 126.55019 * 90.00171 * 5 4 3 7 7 C 1.34500 * 105.61613 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.28605 * 179.97438 * 7 6 5 9 9 H 1.08993 * 109.47304 * 15.00149 * 8 7 6 10 10 C 1.53006 * 109.47184 * 255.00205 * 8 7 6 11 11 N 1.46500 * 109.46840 * 135.00491 * 8 7 6 12 12 C 1.34773 * 119.99910 * 204.99595 * 11 8 7 13 13 O 1.21683 * 120.00267 * 0.02562 * 12 11 8 14 14 C 1.46383 * 119.99941 * 179.97438 * 12 11 8 15 15 H 1.08004 * 119.99733 * 0.02562 * 14 12 11 16 16 C 1.40047 * 120.00125 * 180.02562 * 14 12 11 17 17 N 1.30678 * 119.99847 * 359.97438 * 16 14 12 18 18 Si 1.86790 * 120.00231 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47113 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47478 * 119.99717 * 18 16 14 21 21 H 1.48497 * 109.47418 * 240.00067 * 18 16 14 22 22 N 1.29944 * 107.42179 * 0.24589 * 7 6 5 23 23 O 1.21301 * 110.25537 * 359.57652 * 22 7 6 24 24 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47448 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.47533 * 60.00104 * 1 2 3 27 27 H 1.08997 * 109.46829 * 240.00144 * 2 1 3 28 28 H 1.09000 * 109.47110 * 120.00537 * 2 1 3 29 29 H 1.09006 * 109.47117 * 60.00553 * 4 3 2 30 30 H 1.08991 * 109.47681 * 300.00524 * 4 3 2 31 31 H 1.09000 * 109.47050 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46801 * 300.00442 * 10 8 7 33 33 H 1.09001 * 109.46998 * 60.00038 * 10 8 7 34 34 H 0.97003 * 119.99995 * 25.00470 * 11 8 7 35 35 H 0.96993 * 120.00015 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9161 0.0012 6 7 4.0204 3.6703 1.0549 7 6 4.3451 4.8840 0.5748 8 6 4.6712 6.1080 1.3912 9 1 4.8673 5.8152 2.4226 10 6 3.4878 7.0771 1.3524 11 7 5.8577 6.7636 0.8356 12 6 6.6313 7.5366 1.6231 13 8 6.3446 7.6897 2.7958 14 6 7.8172 8.1912 1.0682 15 1 8.0719 8.0550 0.0275 16 6 8.6215 8.9941 1.8866 17 7 8.3130 9.1593 3.1457 18 14 10.1343 9.8300 1.1783 19 1 10.2618 9.4859 -0.2607 20 1 10.0015 11.3017 1.3259 21 1 11.3426 9.3665 1.9065 22 7 4.3202 4.8088 -0.7222 23 8 4.0255 3.6853 -1.0721 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8339 0.9765 -0.8893 30 1 3.8333 0.9767 0.8907 31 1 3.7239 7.9626 1.9425 32 1 3.2917 7.3699 0.3209 33 1 2.6050 6.5893 1.7657 34 1 6.0864 6.6413 -0.0991 35 1 8.8701 9.7151 3.7126 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347540402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:38 Heat of formation + Delta-G solvation = -46.539618 kcal Electronic energy + Delta-G solvation = -19953.324978 eV Core-core repulsion = 16567.918273 eV Total energy + Delta-G solvation = -3385.406705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.84838 -39.81940 -39.19775 -37.50286 -35.85724 -34.63267 -33.78411 -32.06987 -31.42433 -28.46143 -28.27442 -26.22031 -24.42361 -23.68571 -22.76777 -21.16483 -19.75755 -19.42728 -18.55432 -17.64562 -17.49340 -17.16404 -17.01185 -16.29134 -16.05404 -15.26145 -15.11617 -14.60385 -14.42474 -14.03877 -13.79772 -13.60119 -13.46059 -13.24307 -12.95801 -12.82332 -12.75484 -12.68459 -12.53545 -12.34109 -12.21098 -12.16034 -11.99856 -11.23216 -10.97773 -10.69247 -9.95603 -9.73356 -8.34254 -6.91821 -0.09471 0.90160 1.38925 1.39185 1.57379 1.59485 2.15382 2.28619 2.41498 2.71443 2.89081 3.17490 3.53976 3.70917 4.02785 4.12716 4.21765 4.23884 4.30582 4.36951 4.45265 4.57270 4.57723 4.76265 4.83207 4.87552 5.08305 5.09089 5.28160 5.31447 5.78158 5.97187 6.06435 6.16763 6.81634 6.98924 7.37216 8.38892 8.60930 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044934 B = 0.003339 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.979984 B = 8383.126085 C = 8599.286045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.411 6.411 4 C 0.163 3.837 5 C 0.184 3.816 6 N -0.480 5.480 7 C 0.163 3.837 8 C 0.242 3.758 9 H 0.080 0.920 10 C -0.141 4.141 11 N -0.748 5.748 12 C 0.544 3.456 13 O -0.621 6.621 14 C -0.570 4.570 15 H 0.085 0.915 16 C 0.030 3.970 17 N -0.817 5.817 18 Si 1.001 2.999 19 H -0.250 1.250 20 H -0.266 1.266 21 H -0.266 1.266 22 N -0.379 5.379 23 O 0.100 5.900 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.393 0.607 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -18.923 -9.838 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.331 6.331 4 C 0.085 3.915 5 C -0.037 4.037 6 N -0.215 5.215 7 C -0.110 4.110 8 C 0.134 3.866 9 H 0.098 0.902 10 C -0.200 4.200 11 N -0.404 5.404 12 C 0.349 3.651 13 O -0.508 6.508 14 C -0.607 4.607 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.446 5.446 18 Si 0.820 3.180 19 H -0.173 1.173 20 H -0.191 1.191 21 H -0.191 1.191 22 N -0.083 5.083 23 O 0.036 5.964 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.226 0.774 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.692 -17.819 -8.883 22.599 hybrid contribution 0.675 0.242 -0.301 0.778 sum -10.017 -17.577 -9.184 22.218 Atomic orbital electron populations 1.21810 0.93370 1.03599 1.02425 1.22811 0.95930 0.81004 1.02511 1.87917 1.19023 1.30158 1.95998 1.20893 0.83459 0.80179 1.06961 1.29169 0.95776 0.98901 0.79839 1.71854 1.18182 1.01284 1.30165 1.25835 1.01061 0.95628 0.88475 1.18653 0.87824 0.85250 0.94885 0.90207 1.22028 0.96511 0.98968 1.02519 1.45950 1.27395 1.53527 1.13499 1.18586 0.83362 0.78189 0.84983 1.90562 1.74901 1.66563 1.18754 1.21395 1.09348 1.31543 0.98385 0.89715 1.26975 1.01890 0.95291 0.94438 1.70174 1.36761 1.30501 1.07199 0.84931 0.75748 0.77825 0.79541 1.17261 1.19070 1.19125 1.74579 1.18913 0.99443 1.15336 1.85268 1.61127 1.14325 1.35697 0.88536 0.93028 0.92422 0.90348 0.91306 0.85236 0.86559 0.92664 0.91730 0.90355 0.77361 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.51 6.66 71.98 0.48 0.99 16 3 O -0.41 -7.19 10.33 -148.98 -1.54 -8.73 16 4 C 0.16 2.36 6.56 71.24 0.47 2.83 16 5 C 0.18 4.76 8.14 88.38 0.72 5.48 16 6 N -0.48 -16.32 11.55 -303.18 -3.50 -19.83 16 7 C 0.16 6.17 7.01 138.46 0.97 7.14 16 8 C 0.24 10.54 3.12 44.25 0.14 10.68 16 9 H 0.08 3.91 7.58 -2.39 -0.02 3.89 16 10 C -0.14 -5.50 9.47 71.98 0.68 -4.82 16 11 N -0.75 -36.56 5.06 -450.40 -2.28 -38.84 16 12 C 0.54 32.45 7.71 86.36 0.67 33.11 16 13 O -0.62 -41.96 14.68 -4.29 -0.06 -42.02 16 14 C -0.57 -33.12 9.54 24.83 0.24 -32.89 16 15 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 16 C 0.03 1.67 5.50 85.30 0.47 2.14 16 17 N -0.82 -50.25 11.83 21.84 0.26 -49.99 16 18 Si 1.00 41.44 29.56 68.60 2.03 43.47 16 19 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 N -0.38 -13.21 11.87 -60.30 -0.72 -13.92 16 23 O 0.10 2.85 11.31 74.78 0.85 3.69 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.39 17.67 8.34 -92.71 -0.77 16.90 16 35 H 0.28 15.30 8.29 -92.71 -0.77 14.53 16 Total: -1.00 -80.03 314.97 0.94 -79.08 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.34 Total: 23.19 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 5.57 Total: 23.89 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -6.24 Total: -122.58 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.76 Total: -47.06 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -80.03 0.94 -79.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347540402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.543 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds