Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 N 1.40101 * 126.68438 * 179.84370 * 6 5 3 8 8 C 1.34787 * 119.99787 * 254.97804 * 7 6 5 9 9 O 1.21281 * 119.99635 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.46811 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46924 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47094 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00430 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00033 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47024 * 90.00160 * 17 15 13 19 19 H 1.48501 * 109.46972 * 209.99696 * 17 15 13 20 20 H 1.48496 * 109.47102 * 329.99909 * 17 15 13 21 21 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 22 22 O 1.21540 * 123.76923 * 359.97080 * 21 2 1 23 23 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 26 26 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 27 27 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 28 28 H 0.96998 * 120.00782 * 74.98132 * 7 6 5 29 29 H 1.08997 * 109.47087 * 300.00278 * 10 8 7 30 30 H 1.09005 * 109.46914 * 60.00390 * 10 8 7 31 31 H 1.08997 * 109.47580 * 300.00047 * 11 10 8 32 32 H 1.08999 * 109.47370 * 60.00308 * 11 10 8 33 33 H 1.08997 * 109.47028 * 299.99763 * 12 11 10 34 34 H 1.08992 * 109.47243 * 60.00197 * 12 11 10 35 35 H 0.96998 * 120.00296 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 7 4.5817 -1.7635 -0.0125 8 6 4.8842 -2.4311 -1.1436 9 8 4.2496 -2.2265 -2.1567 10 6 6.0110 -3.4318 -1.1495 11 6 6.1430 -4.0429 -2.5459 12 6 7.2866 -5.0594 -2.5517 13 6 7.4171 -5.6608 -3.9272 14 1 6.7508 -5.3497 -4.7182 15 6 8.3865 -6.6093 -4.1758 16 7 9.1976 -6.9886 -3.2126 17 14 8.5478 -7.3554 -5.8808 18 1 9.4891 -6.5408 -6.6905 19 1 9.0653 -8.7426 -5.7670 20 1 7.2174 -7.3757 -6.5400 21 6 2.2166 -1.1068 -0.0056 22 8 1.7603 -2.2333 -0.0109 23 1 -0.3634 -0.0053 1.0276 24 1 -0.3633 -0.8873 -0.5184 25 1 -0.3633 0.8927 -0.5093 26 1 4.1790 0.9699 0.8983 27 1 4.1768 0.9794 -0.8945 28 1 5.0894 -1.9269 0.7976 29 1 6.9419 -2.9323 -0.8815 30 1 5.8005 -4.2202 -0.4267 31 1 5.2120 -4.5425 -2.8134 32 1 6.3532 -3.2549 -3.2690 33 1 8.2178 -4.5601 -2.2840 34 1 7.0760 -5.8473 -1.8287 35 1 9.8798 -7.6556 -3.3875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349802528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = -47.096625 kcal Electronic energy + Delta-G solvation = -20028.345910 eV Core-core repulsion = 16642.915051 eV Total energy + Delta-G solvation = -3385.430859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62523 -39.71556 -38.77668 -36.54267 -35.79410 -34.28239 -32.96036 -31.99138 -28.69438 -27.55950 -27.29451 -24.19445 -22.98641 -21.67716 -20.43137 -20.02675 -18.65641 -17.73468 -17.13606 -16.92965 -16.30786 -16.12192 -15.90497 -15.25892 -14.56360 -14.49498 -14.44170 -14.21637 -13.92655 -13.37834 -13.11891 -12.95349 -12.34360 -11.92677 -11.52990 -11.39198 -10.84192 -10.78065 -10.69290 -10.56777 -10.25546 -10.18537 -9.91318 -9.73513 -9.46687 -9.27628 -9.07250 -8.34792 -6.00576 -4.02114 0.92394 1.22855 2.21068 2.58603 2.69378 3.33588 3.39657 3.44536 3.59477 3.78007 4.40756 4.47370 4.56335 4.79448 4.88079 4.94511 5.11398 5.23626 5.35818 5.39229 5.52493 5.55770 6.07688 6.48051 6.62076 6.65812 6.82102 6.92468 7.07721 7.09056 7.65789 7.68415 7.77717 7.99437 8.29151 8.42758 9.04723 9.62184 11.10877 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044108 B = 0.003095 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.654684 B = 9044.982866 C = 9160.875554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.574 5.574 3 C 0.531 3.469 4 O -0.468 6.468 5 C 0.067 3.933 6 N -0.432 5.432 7 N -0.492 5.492 8 C 0.515 3.485 9 O -0.510 6.510 10 C -0.124 4.124 11 C -0.096 4.096 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.707 3.293 22 O -0.522 6.522 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.422 0.578 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 16.401 12.003 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.322 5.322 3 C 0.318 3.682 4 O -0.337 6.337 5 C -0.059 4.059 6 N -0.259 5.259 7 N -0.244 5.244 8 C 0.303 3.697 9 O -0.380 6.380 10 C -0.165 4.165 11 C -0.135 4.135 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.408 3.592 22 O -0.392 6.392 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.264 0.736 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.265 16.327 11.272 23.325 hybrid contribution 0.426 -0.476 -0.445 0.778 sum -11.840 15.851 10.827 22.553 Atomic orbital electron populations 1.21894 0.74434 1.05081 1.03832 1.46234 1.09685 1.07570 1.68668 1.20685 0.88344 0.84775 0.74392 1.90839 1.78736 1.17760 1.46377 1.22772 0.96322 0.79471 1.07318 1.45750 0.99926 1.01778 1.78474 1.45220 1.27161 1.37238 1.14830 1.22189 0.85196 0.80583 0.81703 1.90730 1.51143 1.63809 1.32328 1.21887 0.94538 0.96239 1.03873 1.21523 1.01489 0.99294 0.91149 1.19129 0.92105 0.93009 0.97348 1.21250 1.16076 1.22122 0.96311 0.92549 1.25011 0.95783 0.96670 0.96987 1.69954 1.19785 1.31920 1.32026 0.86586 0.78381 0.78407 0.84612 1.20668 1.21241 1.19816 1.15786 0.80958 0.84504 0.77954 1.91023 1.74476 1.20194 1.53532 0.90660 0.88959 0.89124 0.85341 0.85502 0.73559 0.88388 0.88360 0.92390 0.92459 0.96437 0.96392 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.73 59.85 0.64 1.31 16 2 N -0.57 -5.92 3.00 -128.16 -0.39 -6.30 16 3 C 0.53 4.93 8.31 -10.56 -0.09 4.85 16 4 O -0.47 -5.23 17.75 5.59 0.10 -5.13 16 5 C 0.07 0.49 7.88 -4.31 -0.03 0.46 16 6 N -0.43 -4.83 3.41 -65.74 -0.22 -5.05 16 7 N -0.49 -5.42 6.35 31.22 0.20 -5.23 16 8 C 0.52 7.78 7.92 -10.98 -0.09 7.69 16 9 O -0.51 -10.06 16.25 5.56 0.09 -9.97 16 10 C -0.12 -1.82 5.70 -27.89 -0.16 -1.98 16 11 C -0.10 -1.97 4.44 -26.73 -0.12 -2.09 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.71 9.39 8.34 -88.02 -0.73 8.66 16 22 O -0.52 -9.00 17.43 5.33 0.09 -8.91 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.74 7.86 -51.93 -0.41 0.34 16 25 H 0.09 0.57 8.00 -51.93 -0.42 0.15 16 26 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.42 2.93 8.83 -182.60 -1.61 1.31 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -37.90 315.15 -6.57 -44.47 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.78 Total: -5.25 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.13 Total: 5.75 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.33 Total: -42.47 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.28 Total: -24.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.90 -6.57 -44.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349802528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.625 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds