Wall clock time and date at job start Mon Mar 30 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 N 1.40101 * 126.68438 * 179.84370 * 6 5 3 8 8 C 1.34787 * 119.99787 * 254.97804 * 7 6 5 9 9 O 1.21281 * 119.99635 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00018 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.46811 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46924 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47094 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00430 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00033 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00068 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47024 * 90.00160 * 17 15 13 19 19 H 1.48501 * 109.46972 * 209.99696 * 17 15 13 20 20 H 1.48496 * 109.47102 * 329.99909 * 17 15 13 21 21 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 22 22 O 1.21540 * 123.76923 * 359.97080 * 21 2 1 23 23 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 26 26 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 27 27 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 28 28 H 0.96998 * 120.00782 * 74.98132 * 7 6 5 29 29 H 1.08997 * 109.47087 * 300.00278 * 10 8 7 30 30 H 1.09005 * 109.46914 * 60.00390 * 10 8 7 31 31 H 1.08997 * 109.47580 * 300.00047 * 11 10 8 32 32 H 1.08999 * 109.47370 * 60.00308 * 11 10 8 33 33 H 1.08997 * 109.47028 * 299.99763 * 12 11 10 34 34 H 1.08992 * 109.47243 * 60.00197 * 12 11 10 35 35 H 0.96998 * 120.00296 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 7 4.5817 -1.7635 -0.0125 8 6 4.8842 -2.4311 -1.1436 9 8 4.2496 -2.2265 -2.1567 10 6 6.0110 -3.4318 -1.1495 11 6 6.1430 -4.0429 -2.5459 12 6 7.2866 -5.0594 -2.5517 13 6 7.4171 -5.6608 -3.9272 14 1 6.7508 -5.3497 -4.7182 15 6 8.3865 -6.6093 -4.1758 16 7 9.1976 -6.9886 -3.2126 17 14 8.5478 -7.3554 -5.8808 18 1 9.4891 -6.5408 -6.6905 19 1 9.0653 -8.7426 -5.7670 20 1 7.2174 -7.3757 -6.5400 21 6 2.2166 -1.1068 -0.0056 22 8 1.7603 -2.2333 -0.0109 23 1 -0.3634 -0.0053 1.0276 24 1 -0.3633 -0.8873 -0.5184 25 1 -0.3633 0.8927 -0.5093 26 1 4.1790 0.9699 0.8983 27 1 4.1768 0.9794 -0.8945 28 1 5.0894 -1.9269 0.7976 29 1 6.9419 -2.9323 -0.8815 30 1 5.8005 -4.2202 -0.4267 31 1 5.2120 -4.5425 -2.8134 32 1 6.3532 -3.2549 -3.2690 33 1 8.2178 -4.5601 -2.2840 34 1 7.0760 -5.8473 -1.8287 35 1 9.8798 -7.6556 -3.3875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349802528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:38 Heat of formation + Delta-G solvation = -75.465622 kcal Electronic energy + Delta-G solvation = -20029.576082 eV Core-core repulsion = 16642.915051 eV Total energy + Delta-G solvation = -3386.661031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.48016 -40.85868 -39.74477 -37.56331 -36.74555 -36.08926 -34.21328 -33.60731 -30.08739 -28.56609 -28.22424 -25.89708 -24.00726 -22.88793 -21.71138 -21.30737 -19.60777 -18.78143 -18.37184 -17.98700 -17.75826 -17.20062 -16.91595 -16.48478 -16.42855 -15.45058 -15.35923 -15.22472 -14.96112 -14.83169 -14.28361 -13.82376 -13.77634 -13.57070 -13.12987 -12.63223 -12.53345 -12.46180 -12.42802 -11.69356 -11.54788 -11.50729 -11.31932 -11.18308 -11.02434 -10.90310 -10.51971 -10.26294 -8.19012 -6.28024 0.04515 0.44143 1.36197 1.40797 1.41395 1.52299 1.53169 1.75325 2.42385 2.82042 2.87316 3.14505 3.73867 3.79021 4.10530 4.19639 4.25800 4.27691 4.37153 4.39404 4.58753 4.71132 4.79488 4.98083 5.10151 5.21298 5.52326 5.57302 5.78450 5.79082 5.89538 6.14259 6.17391 6.30336 6.67991 6.87648 7.26321 7.40487 8.92259 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044108 B = 0.003095 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.654684 B = 9044.982866 C = 9160.875554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.574 5.574 3 C 0.536 3.464 4 O -0.485 6.485 5 C 0.073 3.927 6 N -0.434 5.434 7 N -0.473 5.473 8 C 0.520 3.480 9 O -0.564 6.564 10 C -0.114 4.114 11 C -0.085 4.085 12 C 0.026 3.974 13 C -0.548 4.548 14 H 0.049 0.951 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.700 3.300 22 O -0.571 6.571 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.176 0.824 27 H 0.141 0.859 28 H 0.446 0.554 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.009 0.991 34 H 0.003 0.997 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 17.630 12.786 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.321 5.321 3 C 0.324 3.676 4 O -0.356 6.356 5 C -0.051 4.051 6 N -0.261 5.261 7 N -0.226 5.226 8 C 0.309 3.691 9 O -0.439 6.439 10 C -0.155 4.155 11 C -0.123 4.123 12 C -0.011 4.011 13 C -0.586 4.586 14 H 0.067 0.933 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.783 3.217 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.195 1.195 21 C 0.401 3.599 22 O -0.446 6.446 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.193 0.807 27 H 0.158 0.842 28 H 0.293 0.707 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.710 17.610 12.116 24.373 hybrid contribution 0.230 -0.809 -0.648 1.062 sum -11.480 16.801 11.468 23.357 Atomic orbital electron populations 1.22103 0.73323 1.05285 1.05171 1.46350 1.10536 1.07117 1.68123 1.20912 0.88975 0.84137 0.73531 1.90844 1.79181 1.18249 1.47326 1.23087 0.95315 0.76509 1.10150 1.45932 0.99300 1.03258 1.77617 1.44776 1.26445 1.36775 1.14617 1.22047 0.84650 0.80508 0.81872 1.90722 1.52992 1.65622 1.34529 1.21688 0.96359 0.97037 1.00438 1.21209 0.98436 0.97872 0.94823 1.19012 0.93293 0.93430 0.95342 1.21700 1.16225 1.22843 0.97824 0.93267 1.25845 0.95398 0.97062 1.00992 1.70047 1.20287 1.32459 1.33969 0.85558 0.78484 0.77813 0.79877 1.19645 1.20425 1.19550 1.16074 0.81795 0.84431 0.77581 1.90985 1.75537 1.22149 1.55917 0.88834 0.89901 0.87751 0.80701 0.84194 0.70718 0.84961 0.86405 0.94637 0.93552 0.97246 0.97869 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.73 127.77 1.37 2.55 16 2 N -0.57 -11.19 3.00 -796.64 -2.39 -13.59 16 3 C 0.54 8.82 8.31 87.94 0.73 9.55 16 4 O -0.49 -9.88 17.75 -2.92 -0.05 -9.93 16 5 C 0.07 0.83 7.88 85.76 0.68 1.50 16 6 N -0.43 -8.77 3.41 -480.31 -1.64 -10.41 16 7 N -0.47 -9.25 6.35 -173.52 -1.10 -10.35 16 8 C 0.52 15.01 7.92 87.66 0.69 15.70 16 9 O -0.56 -22.27 16.25 -3.03 -0.05 -22.31 16 10 C -0.11 -3.18 5.70 29.85 0.17 -3.01 16 11 C -0.08 -3.51 4.44 30.59 0.14 -3.37 16 12 C 0.03 1.33 4.97 29.85 0.15 1.48 16 13 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 17 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.70 18.03 8.34 179.44 1.50 19.53 16 22 O -0.57 -19.91 17.43 -3.84 -0.07 -19.98 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 1.37 7.86 -2.39 -0.02 1.35 16 25 H 0.10 1.21 8.00 -2.38 -0.02 1.19 16 26 H 0.18 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.45 4.61 8.83 -213.32 -1.88 2.73 16 29 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.03 1.59 8.10 -2.39 -0.02 1.57 16 32 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -84.19 315.15 2.36 -81.83 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -0.77 Total: -0.49 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.12 Total: 13.38 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -4.85 Total: -89.22 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.17 Total: -52.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -84.19 2.36 -81.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349802528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.363 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds