Wall clock time and date at job start Mon Mar 30 2020 00:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47055 * 125.41201 * 2 1 4 4 C 1.54099 * 103.86423 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.55362 * 241.25852 * 4 3 2 6 6 C 1.50702 * 110.54709 * 118.59399 * 4 3 2 7 7 O 1.21281 * 120.00278 * 262.00202 * 6 4 3 8 8 N 1.34783 * 119.99573 * 82.00141 * 6 4 3 9 9 C 1.47582 * 134.49046 * 179.97438 * 8 6 4 10 10 C 1.53940 * 86.11560 * 155.35845 * 9 8 6 11 11 O 1.42899 * 113.74480 * 269.15283 * 10 9 8 12 12 C 1.50708 * 113.74121 * 137.95289 * 10 9 8 13 13 H 1.07991 * 119.99789 * 1.92942 * 12 10 9 14 14 C 1.37877 * 120.00008 * 181.92253 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.47806 * 134.45885 * 359.86567 * 8 6 4 21 21 N 1.47052 * 103.99350 * 359.93102 * 4 3 2 22 22 C 1.33953 * 125.41105 * 180.02562 * 2 1 3 23 23 O 1.21584 * 123.04238 * 359.97438 * 22 2 1 24 24 H 1.08990 * 109.47507 * 89.99917 * 1 2 3 25 25 H 1.08999 * 109.46820 * 209.99729 * 1 2 3 26 26 H 1.09002 * 109.47207 * 329.99391 * 1 2 3 27 27 H 1.09006 * 110.54815 * 61.40807 * 3 2 1 28 28 H 1.08999 * 110.67208 * 298.65926 * 3 2 1 29 29 H 1.09006 * 113.76710 * 41.05584 * 9 8 6 30 30 H 1.08999 * 113.77298 * 269.66051 * 9 8 6 31 31 H 0.96702 * 114.00346 * 178.07343 * 11 10 9 32 32 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 33 33 H 1.09007 * 113.76641 * 90.37992 * 20 8 6 34 34 H 1.09003 * 113.83940 * 318.91953 * 20 8 6 35 35 H 0.96995 * 125.41523 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2869 0.9482 0.8941 6 6 4.4899 1.0668 -1.2399 7 8 4.5702 0.3191 -2.1914 8 7 5.0621 2.2861 -1.2906 9 6 5.8401 3.0220 -2.3060 10 6 5.3511 4.3008 -1.6024 11 8 4.1300 4.8189 -2.1339 12 6 6.4179 5.3540 -1.4475 13 1 7.4075 5.1825 -1.8443 14 6 6.1304 6.5364 -0.7992 15 7 7.0612 7.4556 -0.6644 16 14 4.4188 6.8327 -0.1123 17 1 3.5759 7.4839 -1.1472 18 1 4.5093 7.7145 1.0791 19 1 3.8102 5.5353 0.2773 20 6 5.1602 3.4234 -0.3517 21 7 3.5570 -0.8252 0.0007 22 6 2.2411 -1.0917 -0.0005 23 8 1.7946 -2.2226 -0.0005 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 2.1407 1.7934 0.8962 28 1 2.1414 1.7955 -0.8949 29 1 5.4592 2.9057 -3.3207 30 1 6.9163 2.8650 -2.2338 31 1 3.8038 5.6055 -1.6756 32 1 6.8590 8.2873 -0.2081 33 1 6.0365 3.3845 0.2955 34 1 4.2374 3.6272 0.1914 35 1 4.2668 -1.4863 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350983010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:14 Heat of formation + Delta-G solvation = -34.913986 kcal Electronic energy + Delta-G solvation = -21229.747408 eV Core-core repulsion = 17844.844827 eV Total energy + Delta-G solvation = -3384.902580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32778 -39.70257 -37.81384 -36.16098 -34.62355 -34.13582 -32.65757 -30.25558 -28.58309 -27.26713 -25.79049 -25.42415 -23.52074 -20.64429 -20.45367 -18.96346 -17.75872 -17.70228 -17.14937 -16.51647 -16.22513 -15.93095 -15.09695 -15.03354 -14.30873 -14.20597 -13.72806 -13.69905 -13.51163 -13.44760 -12.98610 -12.68908 -12.44732 -12.41234 -12.29407 -11.98334 -11.40148 -11.07449 -10.73343 -10.33426 -10.25130 -10.14295 -9.57532 -9.32472 -9.11495 -8.86738 -8.64389 -8.22770 -6.51958 -4.59258 2.37613 2.77342 2.86661 2.89061 2.91713 3.05727 3.23058 3.80245 3.92533 4.22550 4.39408 4.59194 4.68327 4.88757 4.97381 5.19457 5.29940 5.40448 5.44057 5.55691 5.72726 5.85519 5.88679 6.07860 6.20330 6.24890 6.46661 6.53074 7.01494 7.08130 7.34777 7.92086 8.04601 8.31539 8.38708 8.52214 8.52803 9.04560 10.60182 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030181 B = 0.005425 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.501303 B = 5159.731215 C = 5688.293978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.637 5.637 3 C 0.107 3.893 4 C 0.109 3.891 5 H 0.114 0.886 6 C 0.519 3.481 7 O -0.541 6.541 8 N -0.630 5.630 9 C 0.129 3.871 10 C 0.197 3.803 11 O -0.553 6.553 12 C -0.539 4.539 13 H 0.092 0.908 14 C 0.081 3.919 15 N -0.874 5.874 16 Si 0.858 3.142 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.256 1.256 20 C 0.059 3.941 21 N -0.715 5.715 22 C 0.706 3.294 23 O -0.587 6.587 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.353 0.647 32 H 0.272 0.728 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 -6.421 5.612 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.376 5.376 3 C -0.017 4.017 4 C -0.001 4.001 5 H 0.131 0.869 6 C 0.305 3.695 7 O -0.418 6.418 8 N -0.365 5.365 9 C 0.007 3.993 10 C 0.156 3.844 11 O -0.364 6.364 12 C -0.576 4.576 13 H 0.109 0.891 14 C -0.125 4.125 15 N -0.509 5.509 16 Si 0.686 3.314 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.181 1.181 20 C -0.064 4.064 21 N -0.376 5.376 22 C 0.406 3.594 23 O -0.465 6.465 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.205 0.795 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -8.738 -7.884 4.792 12.707 hybrid contribution -0.421 0.771 0.841 1.217 sum -9.159 -7.112 5.633 12.892 Atomic orbital electron populations 1.21385 0.75433 1.03096 1.02031 1.46999 1.06423 1.05673 1.78516 1.22276 0.86281 0.88875 1.04300 1.21755 0.97148 0.82843 0.98377 0.86875 1.20222 0.80139 0.80323 0.88836 1.90708 1.61399 1.52234 1.37502 1.50211 1.52131 1.13331 1.20784 1.23336 0.95904 0.86530 0.93524 1.20531 0.83731 0.91578 0.88604 1.86472 1.41821 1.46994 1.61120 1.21215 0.98092 0.99817 1.38499 0.89050 1.25016 0.96978 0.95664 0.94857 1.69851 1.33122 1.07268 1.40692 0.87352 0.84913 0.79388 0.79708 1.19302 1.20908 1.18090 1.24806 1.01520 0.83253 0.96825 1.44882 1.06837 1.06265 1.79659 1.15851 0.81673 0.84558 0.77283 1.90936 1.75950 1.20921 1.58732 0.92611 0.90380 0.90800 0.88879 0.89258 0.90465 0.88503 0.79529 0.91795 0.88287 0.91028 0.72485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.21 11.03 59.85 0.66 1.87 16 2 N -0.64 -8.38 3.36 -186.64 -0.63 -9.01 16 3 C 0.11 1.27 7.32 -3.17 -0.02 1.25 16 4 C 0.11 1.43 3.91 -68.21 -0.27 1.16 16 5 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 6 C 0.52 8.84 7.17 -10.98 -0.08 8.76 16 7 O -0.54 -11.24 17.31 5.56 0.10 -11.14 16 8 N -0.63 -10.92 3.61 -178.12 -0.64 -11.57 16 9 C 0.13 2.42 8.23 -2.97 -0.02 2.40 16 10 C 0.20 4.00 1.06 -90.84 -0.10 3.91 16 11 O -0.55 -11.69 13.35 -35.23 -0.47 -12.16 16 12 C -0.54 -12.83 9.19 -34.44 -0.32 -13.15 16 13 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.87 -23.17 13.96 55.43 0.77 -22.39 16 16 Si 0.86 17.13 24.31 -169.99 -4.13 13.00 16 17 H -0.27 -5.26 7.05 56.52 0.40 -4.87 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -4.51 5.16 56.52 0.29 -4.22 16 20 C 0.06 0.99 7.10 -2.83 -0.02 0.97 16 21 N -0.72 -10.11 5.64 -59.24 -0.33 -10.45 16 22 C 0.71 11.31 8.61 -88.11 -0.76 10.55 16 23 O -0.59 -11.30 17.53 5.29 0.09 -11.20 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.15 7.72 -51.93 -0.40 0.75 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 31 H 0.35 7.08 3.57 45.56 0.16 7.24 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.10 1.57 8.09 -51.93 -0.42 1.15 16 34 H 0.07 1.09 6.83 -51.93 -0.35 0.73 16 35 H 0.43 5.58 8.96 -40.82 -0.37 5.21 16 LS Contribution 295.73 15.07 4.46 4.46 Total: -1.00 -31.99 295.73 -5.80 -37.80 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -3.99 Total: 13.09 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: -1.02 Total: 19.58 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.83 Total: -53.42 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.28 Total: -34.50 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -4.13 Total: 13.00 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.99 -5.80 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350983010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.882 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds