Wall clock time and date at job start Mon Mar 30 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.47055 * 125.41201 * 2 1 4 4 C 1.54099 * 103.86423 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.55362 * 241.25852 * 4 3 2 6 6 C 1.50702 * 110.54709 * 118.59399 * 4 3 2 7 7 O 1.21281 * 120.00278 * 262.00202 * 6 4 3 8 8 N 1.34783 * 119.99573 * 82.00141 * 6 4 3 9 9 C 1.47582 * 134.49046 * 179.97438 * 8 6 4 10 10 C 1.53940 * 86.11560 * 155.35845 * 9 8 6 11 11 O 1.42899 * 113.74480 * 269.15283 * 10 9 8 12 12 C 1.50708 * 113.74121 * 137.95289 * 10 9 8 13 13 H 1.07991 * 119.99789 * 1.92942 * 12 10 9 14 14 C 1.37877 * 120.00008 * 181.92253 * 12 10 9 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 C 1.47806 * 134.45885 * 359.86567 * 8 6 4 21 21 N 1.47052 * 103.99350 * 359.93102 * 4 3 2 22 22 C 1.33953 * 125.41105 * 180.02562 * 2 1 3 23 23 O 1.21584 * 123.04238 * 359.97438 * 22 2 1 24 24 H 1.08990 * 109.47507 * 89.99917 * 1 2 3 25 25 H 1.08999 * 109.46820 * 209.99729 * 1 2 3 26 26 H 1.09002 * 109.47207 * 329.99391 * 1 2 3 27 27 H 1.09006 * 110.54815 * 61.40807 * 3 2 1 28 28 H 1.08999 * 110.67208 * 298.65926 * 3 2 1 29 29 H 1.09006 * 113.76710 * 41.05584 * 9 8 6 30 30 H 1.08999 * 113.77298 * 269.66051 * 9 8 6 31 31 H 0.96702 * 114.00346 * 178.07343 * 11 10 9 32 32 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 33 33 H 1.09007 * 113.76641 * 90.37992 * 20 8 6 34 34 H 1.09003 * 113.83940 * 318.91953 * 20 8 6 35 35 H 0.96995 * 125.41523 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2869 0.9482 0.8941 6 6 4.4899 1.0668 -1.2399 7 8 4.5702 0.3191 -2.1914 8 7 5.0621 2.2861 -1.2906 9 6 5.8401 3.0220 -2.3060 10 6 5.3511 4.3008 -1.6024 11 8 4.1300 4.8189 -2.1339 12 6 6.4179 5.3540 -1.4475 13 1 7.4075 5.1825 -1.8443 14 6 6.1304 6.5364 -0.7992 15 7 7.0612 7.4556 -0.6644 16 14 4.4188 6.8327 -0.1123 17 1 3.5759 7.4839 -1.1472 18 1 4.5093 7.7145 1.0791 19 1 3.8102 5.5353 0.2773 20 6 5.1602 3.4234 -0.3517 21 7 3.5570 -0.8252 0.0007 22 6 2.2411 -1.0917 -0.0005 23 8 1.7946 -2.2226 -0.0005 24 1 -0.3634 0.0000 -1.0275 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 2.1407 1.7934 0.8962 28 1 2.1414 1.7955 -0.8949 29 1 5.4592 2.9057 -3.3207 30 1 6.9163 2.8650 -2.2338 31 1 3.8038 5.6055 -1.6756 32 1 6.8590 8.2873 -0.2081 33 1 6.0365 3.3845 0.2955 34 1 4.2374 3.6272 0.1914 35 1 4.2668 -1.4863 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350983010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:13 Heat of formation + Delta-G solvation = -63.191373 kcal Electronic energy + Delta-G solvation = -21230.973607 eV Core-core repulsion = 17844.844827 eV Total energy + Delta-G solvation = -3386.128780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.45350 -41.11804 -39.26580 -37.39929 -36.19666 -35.13657 -34.49379 -31.55317 -29.86827 -28.31468 -27.18043 -26.99134 -24.62470 -22.00322 -21.66059 -20.33650 -19.39296 -18.85043 -18.49403 -18.04367 -17.39786 -17.23451 -16.43318 -16.24978 -15.61320 -15.36599 -15.13880 -15.12152 -14.92547 -14.53679 -14.36322 -14.20525 -13.80802 -13.47460 -13.27736 -12.97011 -12.90339 -12.60311 -12.37892 -11.86605 -11.64501 -11.52176 -11.11147 -10.95353 -10.61825 -10.33251 -9.72632 -9.61126 -8.36246 -6.50386 1.26059 1.30891 1.36447 1.49704 1.55666 1.69937 2.01901 2.25946 2.77528 2.84875 3.16137 3.22671 3.42808 3.82196 3.87656 4.04875 4.34966 4.41393 4.43775 4.48850 4.63738 4.69360 4.72650 4.80606 4.85578 4.92197 5.00889 5.34300 5.56983 5.97267 6.09851 6.27615 6.58408 6.68152 6.77690 6.97716 7.18718 7.38510 8.79144 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030181 B = 0.005425 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.501303 B = 5159.731215 C = 5688.293978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.635 5.635 3 C 0.106 3.894 4 C 0.115 3.885 5 H 0.154 0.846 6 C 0.518 3.482 7 O -0.585 6.585 8 N -0.625 5.625 9 C 0.122 3.878 10 C 0.185 3.815 11 O -0.560 6.560 12 C -0.545 4.545 13 H 0.050 0.950 14 C 0.024 3.976 15 N -0.929 5.929 16 Si 0.918 3.082 17 H -0.263 1.263 18 H -0.287 1.287 19 H -0.208 1.208 20 C 0.075 3.925 21 N -0.714 5.714 22 C 0.694 3.306 23 O -0.630 6.630 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.358 0.642 32 H 0.272 0.728 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -6.317 7.686 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.373 5.373 3 C -0.018 4.018 4 C 0.005 3.995 5 H 0.172 0.828 6 C 0.306 3.694 7 O -0.466 6.466 8 N -0.359 5.359 9 C 0.000 4.000 10 C 0.144 3.856 11 O -0.372 6.372 12 C -0.583 4.583 13 H 0.068 0.932 14 C -0.177 4.177 15 N -0.566 5.566 16 Si 0.742 3.258 17 H -0.189 1.189 18 H -0.213 1.213 19 H -0.131 1.131 20 C -0.047 4.047 21 N -0.375 5.375 22 C 0.394 3.606 23 O -0.512 6.512 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.157 0.843 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.210 0.790 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.062 -7.771 6.873 15.166 hybrid contribution 0.408 0.759 0.057 0.864 sum -10.654 -7.012 6.930 14.516 Atomic orbital electron populations 1.21639 0.73761 1.04644 1.02503 1.47214 1.07478 1.05264 1.77367 1.22523 0.84732 0.88381 1.06133 1.21962 0.98136 0.82059 0.97317 0.82833 1.20979 0.79417 0.79396 0.89598 1.90698 1.62928 1.53358 1.39577 1.50124 1.51799 1.13752 1.20220 1.23293 0.96513 0.86696 0.93545 1.20554 0.82783 0.90965 0.91260 1.86470 1.41487 1.47307 1.61894 1.21351 0.97633 1.01357 1.37993 0.93152 1.25920 1.01614 0.95031 0.95088 1.70020 1.36052 1.08095 1.42462 0.86355 0.79406 0.81301 0.78723 1.18892 1.21347 1.13102 1.24669 1.03769 0.81030 0.95224 1.44937 1.06479 1.07067 1.78977 1.16178 0.82362 0.84721 0.77344 1.90897 1.76752 1.22783 1.60740 0.92712 0.91007 0.87104 0.84311 0.90027 0.91611 0.88097 0.78953 0.91861 0.87003 0.87684 0.72253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.92 11.03 127.77 1.41 3.33 16 2 N -0.63 -14.62 3.36 -863.14 -2.90 -17.52 16 3 C 0.11 1.98 7.32 86.65 0.63 2.61 16 4 C 0.11 2.54 3.91 44.51 0.17 2.72 16 5 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 6 C 0.52 16.29 7.17 87.66 0.63 16.92 16 7 O -0.59 -23.77 17.31 -3.03 -0.05 -23.82 16 8 N -0.63 -19.90 3.61 -839.66 -3.03 -22.93 16 9 C 0.12 4.50 8.23 86.48 0.71 5.21 16 10 C 0.19 7.18 1.06 -10.87 -0.01 7.17 16 11 O -0.56 -22.04 13.35 -148.98 -1.99 -24.03 16 12 C -0.55 -26.10 9.19 25.60 0.24 -25.86 16 13 H 0.05 2.73 8.06 -2.92 -0.02 2.71 16 14 C 0.02 1.17 5.47 84.65 0.46 1.63 16 15 N -0.93 -50.30 13.96 21.45 0.30 -50.00 16 16 Si 0.92 33.10 24.31 68.60 1.67 34.77 16 17 H -0.26 -9.32 7.05 99.48 0.70 -8.62 16 18 H -0.29 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.21 -5.84 5.16 99.48 0.51 -5.33 16 20 C 0.07 2.20 7.10 86.45 0.61 2.82 16 21 N -0.71 -18.58 5.64 -459.90 -2.59 -21.18 16 22 C 0.69 20.95 8.61 179.47 1.55 22.50 16 23 O -0.63 -23.94 17.53 -3.98 -0.07 -24.01 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.30 7.91 -2.39 -0.02 1.28 16 26 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.14 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.08 1.72 7.72 -2.39 -0.02 1.70 16 29 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 30 H 0.10 3.58 8.09 -2.39 -0.02 3.56 16 31 H 0.36 12.96 3.57 -74.06 -0.26 12.70 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.11 3.08 8.09 -2.38 -0.02 3.06 16 34 H 0.11 2.43 6.83 -2.39 -0.02 2.42 16 35 H 0.43 10.61 8.96 -92.71 -0.83 9.78 16 Total: -1.00 -72.78 295.73 -2.42 -75.21 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.16 Total: 34.46 kcal Atomic # 6 Polarization: 32.64 SS G_CDS: 6.40 Total: 39.04 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -8.23 Total: -111.63 kcal Atomic # 8 Polarization: -69.74 SS G_CDS: -2.11 Total: -71.86 kcal Atomic # 14 Polarization: 33.10 SS G_CDS: 1.67 Total: 34.77 kcal Total: -72.78 -2.42 -75.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350983010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.016 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds