Wall clock time and date at job start Mon Mar 30 2020 01:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47329 * 239.99968 * 3 2 1 5 5 H 1.48503 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47209 * 120.00400 * 3 2 1 7 7 C 1.37879 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.42895 * 113.38463 * 46.92306 * 9 7 2 11 11 C 1.53517 * 114.16583 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 139.69853 * 11 9 7 13 13 C 1.46893 * 111.00130 * 221.26429 * 12 11 9 14 14 C 1.50699 * 109.47365 * 170.00095 * 13 12 11 15 15 C 1.39871 * 126.04049 * 90.02427 * 14 13 12 16 16 N 1.30838 * 108.20373 * 179.97438 * 15 14 13 17 17 N 1.40091 * 108.20468 * 359.97438 * 16 15 14 18 18 C 1.46497 * 126.03559 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47369 * 304.97048 * 18 17 16 20 20 F 1.39896 * 109.47521 * 179.97438 * 19 18 17 21 21 C 1.34949 * 107.92193 * 359.76008 * 17 16 15 22 22 C 1.47486 * 87.83624 * 332.95820 * 12 11 9 23 23 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 24 24 H 0.96692 * 114.00048 * 313.07558 * 10 9 7 25 25 H 1.09002 * 113.47888 * 24.90211 * 11 9 7 26 26 H 1.09003 * 113.47419 * 254.49544 * 11 9 7 27 27 H 1.08996 * 109.47219 * 289.99944 * 13 12 11 28 28 H 1.09003 * 109.47111 * 50.00095 * 13 12 11 29 29 H 1.07999 * 125.89878 * 359.95080 * 15 14 13 30 30 H 1.09001 * 109.47599 * 64.97661 * 18 17 16 31 31 H 1.09006 * 109.46837 * 184.97435 * 18 17 16 32 32 H 1.08999 * 109.47489 * 300.00330 * 19 18 17 33 33 H 1.09006 * 109.46825 * 60.00379 * 19 18 17 34 34 H 1.08002 * 126.12070 * 180.24808 * 21 17 16 35 35 H 1.09001 * 113.47573 * 141.77409 * 22 12 11 36 36 H 1.08996 * 113.47515 * 272.18523 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1914 -2.5422 -0.9582 11 6 2.1499 -3.7437 -0.0005 12 7 1.2084 -4.3600 0.9528 13 6 1.9274 -5.0888 2.0062 14 6 0.9592 -5.4933 3.0878 15 6 0.2345 -6.6885 3.1387 16 7 -0.4959 -6.6778 4.2242 17 7 -0.2582 -5.4737 4.8997 18 6 -0.8739 -5.0578 6.1623 19 6 -2.3971 -5.1111 6.0290 20 9 -2.9850 -4.7145 7.2348 21 6 0.6424 -4.7673 4.1849 22 6 0.8556 -2.9990 1.3981 23 1 -0.4849 0.8400 0.0004 24 1 -0.3730 -1.7571 -0.9557 25 1 3.1393 -3.5649 0.4204 26 1 2.1874 -4.2522 -0.9640 27 1 2.3898 -5.9795 1.5810 28 1 2.6988 -4.4463 2.4308 29 1 0.2712 -7.4829 2.4080 30 1 -0.5553 -5.7286 6.9603 31 1 -0.5653 -4.0395 6.3989 32 1 -2.7157 -4.4403 5.2311 33 1 -2.7057 -6.1295 5.7924 34 1 1.0373 -3.7953 4.4412 35 1 -0.2045 -2.8757 1.6197 36 1 1.4990 -2.6218 2.1930 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352017523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:56 Heat of formation + Delta-G solvation = 19.024976 kcal Electronic energy + Delta-G solvation = -20413.096696 eV Core-core repulsion = 17042.905874 eV Total energy + Delta-G solvation = -3370.190822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.95343 -41.13820 -38.99178 -34.71186 -33.95116 -32.06701 -31.03645 -29.67074 -27.50949 -25.52180 -24.79082 -23.81405 -22.26555 -20.77002 -19.90009 -18.57589 -17.36430 -17.09455 -16.60863 -15.78007 -15.37730 -15.09003 -14.99453 -14.54049 -14.24769 -14.03690 -13.73673 -13.56939 -13.05105 -12.86818 -12.27287 -11.99070 -11.77809 -11.51688 -11.46844 -11.25235 -11.09567 -10.86662 -10.69034 -10.37275 -10.25786 -9.98735 -9.35298 -9.31353 -8.68973 -8.33766 -8.05080 -7.83492 -6.27998 -4.37934 1.94032 2.41643 2.96323 3.18752 3.24838 3.27037 4.04146 4.23438 4.36084 4.71316 4.77365 4.92500 4.96299 4.97654 5.13439 5.25568 5.39582 5.49575 5.66185 5.89565 5.98731 6.05394 6.09515 6.29376 6.33968 6.46997 6.72663 6.75602 7.03662 7.06310 7.22000 7.36042 7.75713 7.76754 7.96447 8.07400 8.64277 9.32250 9.69602 10.77769 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.004718 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.934233 B = 5933.642363 C = 6785.766520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.246 3.754 10 O -0.570 6.570 11 C 0.002 3.998 12 N -0.466 5.466 13 C 0.093 3.907 14 C -0.210 4.210 15 C 0.070 3.930 16 N -0.307 5.307 17 N -0.382 5.382 18 C 0.111 3.889 19 C 0.052 3.948 20 F -0.211 7.211 21 C 0.063 3.937 22 C -0.014 4.014 23 H 0.272 0.728 24 H 0.389 0.611 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.183 0.817 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.063 0.937 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -7.943 10.442 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.204 3.796 10 O -0.382 6.382 11 C -0.127 4.127 12 N -0.188 5.188 13 C -0.037 4.037 14 C -0.222 4.222 15 C -0.117 4.117 16 N -0.127 5.127 17 N -0.165 5.165 18 C -0.012 4.012 19 C -0.004 4.004 20 F -0.192 7.192 21 C -0.082 4.082 22 C -0.144 4.144 23 H 0.082 0.918 24 H 0.245 0.755 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.200 0.800 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.188 0.812 35 H 0.082 0.918 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.046 -9.466 10.969 14.526 hybrid contribution 1.418 2.438 0.229 2.830 sum 0.372 -7.028 11.197 13.225 Atomic orbital electron populations 1.69296 1.06125 1.27896 1.50617 1.25060 0.94954 0.99630 0.93434 0.86473 0.79551 0.82081 0.78849 1.19895 1.21020 1.20099 1.21564 0.93635 0.90612 1.51477 0.91622 1.19398 0.85088 0.90560 0.84512 1.86031 1.45035 1.47987 1.59160 1.24077 0.95278 0.96519 0.96831 1.69027 1.26611 1.13664 1.09497 1.20919 0.92867 0.99046 0.90850 1.19994 1.07205 0.96543 0.98413 1.23771 0.94348 0.98293 0.95258 1.77252 1.24547 1.01820 1.09119 1.48193 1.34439 1.14554 1.19308 1.22083 0.93223 1.02439 0.83470 1.22196 0.91604 1.03196 0.83410 1.92780 1.85140 1.92921 1.48355 1.22369 0.94217 0.98255 0.93393 1.24613 1.00361 0.87877 1.01506 0.91797 0.75510 0.91878 0.91101 0.90793 0.94149 0.80030 0.88993 0.87641 0.89828 0.89213 0.81158 0.91843 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.85 11.02 55.43 0.61 -23.24 16 2 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 3 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.53 -13.99 8.69 -34.44 -0.30 -14.29 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 6.16 1.57 -91.14 -0.14 6.02 16 10 O -0.57 -15.49 13.54 -35.23 -0.48 -15.97 16 11 C 0.00 0.04 7.12 -7.54 -0.05 -0.02 16 12 N -0.47 -9.51 6.40 -245.82 -1.57 -11.08 16 13 C 0.09 1.52 5.31 -4.98 -0.03 1.49 16 14 C -0.21 -3.26 5.31 -105.05 -0.56 -3.81 16 15 C 0.07 1.03 11.96 -17.36 -0.21 0.83 16 16 N -0.31 -4.57 12.42 30.62 0.38 -4.19 16 17 N -0.38 -5.08 3.68 -61.37 -0.23 -5.30 16 18 C 0.11 1.08 6.96 -4.05 -0.03 1.05 16 19 C 0.05 0.52 7.74 37.16 0.29 0.81 16 20 F -0.21 -2.34 17.36 2.25 0.04 -2.30 16 21 C 0.06 0.89 11.13 -17.22 -0.19 0.70 16 22 C -0.01 -0.32 6.54 -7.44 -0.05 -0.37 16 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.39 10.75 6.33 45.56 0.29 11.04 16 25 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.65 7.56 -51.93 -0.39 0.25 16 29 H 0.18 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.05 1.17 7.66 -51.93 -0.40 0.78 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -29.37 311.44 -7.19 -36.56 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.25 Total: 11.71 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.37 Total: -5.84 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.81 Total: -43.81 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.48 Total: -15.97 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.37 -7.19 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352017523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.580 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds