Wall clock time and date at job start Mon Mar 30 2020 01:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47329 * 239.99968 * 3 2 1 5 5 H 1.48503 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47209 * 120.00400 * 3 2 1 7 7 C 1.37879 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.42895 * 113.38463 * 46.92306 * 9 7 2 11 11 C 1.53517 * 114.16583 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 139.69853 * 11 9 7 13 13 C 1.46893 * 111.00130 * 221.26429 * 12 11 9 14 14 C 1.50699 * 109.47365 * 170.00095 * 13 12 11 15 15 C 1.39871 * 126.04049 * 90.02427 * 14 13 12 16 16 N 1.30838 * 108.20373 * 179.97438 * 15 14 13 17 17 N 1.40091 * 108.20468 * 359.97438 * 16 15 14 18 18 C 1.46497 * 126.03559 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47369 * 304.97048 * 18 17 16 20 20 F 1.39896 * 109.47521 * 179.97438 * 19 18 17 21 21 C 1.34949 * 107.92193 * 359.76008 * 17 16 15 22 22 C 1.47486 * 87.83624 * 332.95820 * 12 11 9 23 23 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 24 24 H 0.96692 * 114.00048 * 313.07558 * 10 9 7 25 25 H 1.09002 * 113.47888 * 24.90211 * 11 9 7 26 26 H 1.09003 * 113.47419 * 254.49544 * 11 9 7 27 27 H 1.08996 * 109.47219 * 289.99944 * 13 12 11 28 28 H 1.09003 * 109.47111 * 50.00095 * 13 12 11 29 29 H 1.07999 * 125.89878 * 359.95080 * 15 14 13 30 30 H 1.09001 * 109.47599 * 64.97661 * 18 17 16 31 31 H 1.09006 * 109.46837 * 184.97435 * 18 17 16 32 32 H 1.08999 * 109.47489 * 300.00330 * 19 18 17 33 33 H 1.09006 * 109.46825 * 60.00379 * 19 18 17 34 34 H 1.08002 * 126.12070 * 180.24808 * 21 17 16 35 35 H 1.09001 * 113.47573 * 141.77409 * 22 12 11 36 36 H 1.08996 * 113.47515 * 272.18523 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1914 -2.5422 -0.9582 11 6 2.1499 -3.7437 -0.0005 12 7 1.2084 -4.3600 0.9528 13 6 1.9274 -5.0888 2.0062 14 6 0.9592 -5.4933 3.0878 15 6 0.2345 -6.6885 3.1387 16 7 -0.4959 -6.6778 4.2242 17 7 -0.2582 -5.4737 4.8997 18 6 -0.8739 -5.0578 6.1623 19 6 -2.3971 -5.1111 6.0290 20 9 -2.9850 -4.7145 7.2348 21 6 0.6424 -4.7673 4.1849 22 6 0.8556 -2.9990 1.3981 23 1 -0.4849 0.8400 0.0004 24 1 -0.3730 -1.7571 -0.9557 25 1 3.1393 -3.5649 0.4204 26 1 2.1874 -4.2522 -0.9640 27 1 2.3898 -5.9795 1.5810 28 1 2.6988 -4.4463 2.4308 29 1 0.2712 -7.4829 2.4080 30 1 -0.5553 -5.7286 6.9603 31 1 -0.5653 -4.0395 6.3989 32 1 -2.7157 -4.4403 5.2311 33 1 -2.7057 -6.1295 5.7924 34 1 1.0373 -3.7953 4.4412 35 1 -0.2045 -2.8757 1.6197 36 1 1.4990 -2.6218 2.1930 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352017523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:56 Heat of formation + Delta-G solvation = -2.969895 kcal Electronic energy + Delta-G solvation = -20414.050465 eV Core-core repulsion = 17042.905874 eV Total energy + Delta-G solvation = -3371.144591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.81589 -42.24091 -40.68450 -36.38509 -35.12388 -34.06561 -32.36345 -30.72710 -29.06717 -27.14172 -26.51715 -24.77604 -23.79184 -21.80629 -21.06726 -20.39139 -19.19964 -18.18285 -17.46143 -17.07253 -16.81728 -16.59032 -16.24275 -15.94765 -15.69593 -15.53828 -14.96677 -14.86952 -14.37119 -13.93837 -13.78932 -13.59536 -13.31301 -13.20912 -12.82298 -12.58705 -12.54973 -12.35679 -12.18419 -11.97436 -11.80241 -11.47990 -11.13326 -10.62200 -10.40122 -10.03443 -9.62709 -9.29076 -8.22050 -6.39829 0.86178 1.44915 1.46375 1.47014 1.54714 1.81383 2.39525 2.99352 3.19611 3.44717 3.58646 3.81827 3.91126 3.96440 4.09581 4.12165 4.19908 4.34083 4.37774 4.49509 4.56301 4.65058 4.75840 4.83122 4.88958 5.00222 5.14398 5.22660 5.44315 5.56939 5.70620 5.79051 6.00841 6.02136 6.45527 6.66630 6.68165 7.33474 7.60047 8.82618 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.004718 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.934233 B = 5933.642363 C = 6785.766520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.027 3.973 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.213 3.787 10 O -0.586 6.586 11 C 0.012 3.988 12 N -0.472 5.472 13 C 0.097 3.903 14 C -0.234 4.234 15 C 0.063 3.937 16 N -0.324 5.324 17 N -0.378 5.378 18 C 0.106 3.894 19 C 0.058 3.942 20 F -0.215 7.215 21 C 0.064 3.936 22 C 0.005 3.995 23 H 0.273 0.727 24 H 0.382 0.618 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.199 0.801 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.188 0.812 35 H 0.037 0.963 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -7.856 11.568 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.172 4.172 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.172 3.828 10 O -0.397 6.397 11 C -0.117 4.117 12 N -0.194 5.194 13 C -0.032 4.032 14 C -0.246 4.246 15 C -0.124 4.124 16 N -0.145 5.145 17 N -0.161 5.161 18 C -0.016 4.016 19 C 0.002 3.998 20 F -0.196 7.196 21 C -0.082 4.082 22 C -0.125 4.125 23 H 0.083 0.917 24 H 0.237 0.763 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.215 0.785 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.205 0.795 35 H 0.056 0.944 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.024 -9.405 12.113 15.336 hybrid contribution 1.051 2.370 -0.086 2.594 sum 1.076 -7.035 12.027 13.975 Atomic orbital electron populations 1.69383 1.07323 1.28624 1.50998 1.25808 0.95699 1.02726 0.92990 0.85477 0.78298 0.78090 0.78976 1.19772 1.20848 1.19180 1.21850 0.93932 0.91606 1.51932 0.91375 1.19844 0.85489 0.91915 0.85553 1.86013 1.45691 1.47664 1.60363 1.23987 0.95617 0.94756 0.97336 1.68943 1.27300 1.12593 1.10614 1.20915 0.92943 0.99204 0.90131 1.20018 1.08217 0.97410 0.98929 1.24085 0.94031 0.98664 0.95576 1.77216 1.24962 1.02804 1.09510 1.48432 1.33943 1.13888 1.19860 1.22357 0.92675 1.04122 0.82435 1.22107 0.91917 1.02850 0.82930 1.92772 1.85269 1.92959 1.48632 1.22668 0.93846 0.98617 0.93082 1.24296 0.98794 0.89184 1.00212 0.91695 0.76337 0.90076 0.91307 0.89043 0.93377 0.78469 0.87353 0.85489 0.90477 0.89441 0.79533 0.94395 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 11.02 21.45 0.24 -49.00 16 2 C 0.03 1.40 5.40 84.65 0.46 1.85 16 3 Si 0.97 40.43 29.54 68.60 2.03 42.46 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.56 -28.85 8.69 25.60 0.22 -28.62 16 8 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.21 10.66 1.57 -11.13 -0.02 10.64 16 10 O -0.59 -32.41 13.54 -148.98 -2.02 -34.42 16 11 C 0.01 0.49 7.12 83.58 0.59 1.09 16 12 N -0.47 -18.76 6.40 -931.96 -5.97 -24.73 16 13 C 0.10 2.99 5.31 85.56 0.45 3.44 16 14 C -0.23 -6.87 5.31 -20.14 -0.11 -6.97 16 15 C 0.06 1.76 11.96 85.24 1.02 2.78 16 16 N -0.32 -9.20 12.42 -57.02 -0.71 -9.91 16 17 N -0.38 -9.39 3.68 -348.06 -1.28 -10.67 16 18 C 0.11 1.84 6.96 86.38 0.60 2.44 16 19 C 0.06 1.09 7.74 71.98 0.56 1.65 16 20 F -0.22 -4.48 17.36 44.97 0.78 -3.70 16 21 C 0.06 1.70 11.13 83.54 0.93 2.63 16 22 C 0.00 0.22 6.54 83.64 0.55 0.76 16 23 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 24 H 0.38 21.71 6.33 -74.06 -0.47 21.25 16 25 H 0.08 3.05 7.72 -2.39 -0.02 3.04 16 26 H 0.07 2.87 8.14 -2.39 -0.02 2.86 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.42 7.56 -2.39 -0.02 1.40 16 29 H 0.20 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.13 1.68 8.07 -2.38 -0.02 1.66 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.19 4.19 8.06 -2.91 -0.02 4.16 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.06 2.62 7.66 -2.39 -0.02 2.60 16 Total: -1.00 -61.69 311.44 -1.05 -62.74 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.62 Total: 35.54 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.26 Total: -8.31 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -7.72 Total: -94.31 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -2.02 Total: -34.42 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -61.69 -1.05 -62.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352017523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.769 kcal (2) G-P(sol) polarization free energy of solvation -61.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds