Wall clock time and date at job start Mon Mar 30 2020 00:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47438 * 2 1 4 4 C 1.50695 * 109.47197 * 239.99347 * 2 1 3 5 5 H 1.07994 * 120.00693 * 265.10047 * 4 2 1 6 6 C 1.37882 * 119.99816 * 85.10278 * 4 2 1 7 7 N 1.31509 * 120.00065 * 185.00330 * 6 4 2 8 8 Si 1.86803 * 119.99750 * 5.01204 * 6 4 2 9 9 H 1.48498 * 109.47469 * 94.94954 * 8 6 4 10 10 H 1.48503 * 109.46670 * 214.94817 * 8 6 4 11 11 H 1.48503 * 109.47040 * 334.94521 * 8 6 4 12 12 C 1.50704 * 109.46586 * 119.99533 * 2 1 3 13 13 O 1.21287 * 119.99564 * 120.00217 * 12 2 1 14 14 N 1.34774 * 120.00497 * 299.99969 * 12 2 1 15 15 C 1.39872 * 120.00132 * 184.52564 * 14 12 2 16 16 C 1.39993 * 119.66231 * 324.78751 * 15 14 12 17 17 C 1.35912 * 120.92582 * 180.02562 * 16 15 14 18 18 C 1.40595 * 119.89533 * 0.02562 * 17 16 15 19 19 C 1.40540 * 121.13190 * 180.02562 * 18 17 16 20 20 C 1.36105 * 119.68873 * 179.97438 * 19 18 17 21 21 C 1.39374 * 120.99837 * 0.02562 * 20 19 18 22 22 C 1.36085 * 120.97120 * 359.97438 * 21 20 19 23 23 C 1.40595 * 119.66033 * 359.97438 * 22 21 20 24 24 C 1.37699 * 119.65496 * 144.80535 * 15 14 12 25 25 H 1.08999 * 109.46790 * 185.00511 * 1 2 3 26 26 H 1.08993 * 109.47353 * 305.01236 * 1 2 3 27 27 H 1.08995 * 109.46679 * 65.00955 * 1 2 3 28 28 H 0.96998 * 120.00188 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99941 * 4.53412 * 14 12 2 30 30 H 1.07998 * 119.53789 * 0.04165 * 16 15 14 31 31 H 1.07994 * 120.05487 * 179.97438 * 17 16 15 32 32 H 1.07997 * 120.15879 * 359.96103 * 19 18 17 33 33 H 1.08000 * 119.49790 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.51132 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.17001 * 180.27744 * 22 21 20 36 36 H 1.08004 * 120.24709 * 359.96200 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2877 -1.7587 -1.1822 6 6 2.1661 -0.0223 -2.4176 7 7 2.5097 -0.6625 -3.5137 8 14 1.8593 1.8197 -2.4690 9 1 3.1483 2.5408 -2.3148 10 1 1.2417 2.1824 -3.7699 11 1 0.9439 2.2001 -1.3633 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2499 2.4547 15 6 2.2489 -0.8512 3.5952 16 6 2.4753 -2.2327 3.6088 17 6 3.0005 -2.8437 4.7034 18 6 3.3232 -2.0849 5.8421 19 6 3.8680 -2.6897 6.9878 20 6 4.1700 -1.9270 8.0738 21 6 3.9470 -0.5512 8.0692 22 6 3.4210 0.0693 6.9782 23 6 3.0973 -0.6856 5.8371 24 6 2.5542 -0.0783 4.6931 25 1 -0.3633 -1.0238 0.0897 26 1 -0.3634 0.5896 0.8416 27 1 -0.3632 0.4341 -0.9314 28 1 2.6034 -0.1784 -4.3490 29 1 1.0962 0.4985 2.5447 30 1 2.2293 -2.8211 2.7373 31 1 3.1689 -3.9104 4.6987 32 1 4.0459 -3.7548 7.0065 33 1 4.5889 -2.3949 8.9524 34 1 4.1959 0.0311 8.9441 35 1 3.2577 1.1368 6.9870 36 1 2.3770 0.9869 4.6748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354121674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:22 Heat of formation + Delta-G solvation = 4.008745 kcal Electronic energy + Delta-G solvation = -19307.047953 eV Core-core repulsion = 16334.682452 eV Total energy + Delta-G solvation = -2972.365501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52617 -39.21002 -36.42585 -33.99113 -33.72336 -32.43184 -31.33785 -29.61516 -28.51061 -25.29491 -23.81677 -23.30822 -21.95199 -21.88595 -19.56042 -17.92713 -17.06340 -16.98673 -16.69740 -15.57282 -15.11588 -14.61955 -14.41081 -14.27592 -13.72078 -13.52583 -13.29749 -13.27450 -12.94913 -12.59986 -12.30112 -11.99318 -11.65074 -11.40013 -11.24880 -11.14679 -10.82741 -10.71761 -10.47510 -10.06568 -9.83691 -9.49536 -9.22721 -8.84525 -8.62136 -8.16272 -7.55612 -6.12417 -4.12971 0.58050 1.09101 2.09789 2.95609 3.19363 3.26682 3.30422 3.46852 3.56158 4.20946 4.33035 4.63609 4.83898 4.96182 5.08926 5.16282 5.18991 5.36168 5.38140 5.45434 5.70127 5.76081 5.93777 6.01525 6.04104 6.20069 6.27844 6.32397 6.41120 6.44116 6.54768 6.63394 6.72587 6.76043 6.91564 7.09106 7.22919 7.45561 7.89123 8.44778 8.86125 9.04295 9.46176 11.00443 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.004008 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.841219 B = 6984.750075 C = 7307.023284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.002 4.002 3 H 0.057 0.943 4 C -0.504 4.504 5 H 0.089 0.911 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.868 3.132 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.522 3.478 13 O -0.507 6.507 14 N -0.691 5.691 15 C 0.177 3.823 16 C -0.110 4.110 17 C -0.095 4.095 18 C -0.071 4.071 19 C -0.097 4.097 20 C -0.134 4.134 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.027 4.027 24 C -0.162 4.162 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 1.997 21.146 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.075 0.925 4 C -0.542 4.542 5 H 0.107 0.893 6 C -0.129 4.129 7 N -0.529 5.529 8 Si 0.695 3.305 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.184 1.184 12 C 0.312 3.688 13 O -0.379 6.379 14 N -0.337 5.337 15 C 0.081 3.919 16 C -0.130 4.130 17 C -0.113 4.113 18 C -0.072 4.072 19 C -0.115 4.115 20 C -0.152 4.152 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.028 4.028 24 C -0.184 4.184 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.818 1.304 20.712 20.770 hybrid contribution -0.344 1.465 -0.146 1.512 sum -1.161 2.770 20.566 20.784 Atomic orbital electron populations 1.22033 0.96637 1.00729 1.00097 1.19366 0.94072 0.97214 0.91699 0.92480 1.20772 1.43809 0.99080 0.90489 0.89266 1.24986 0.94535 0.97923 0.95441 1.69884 1.47456 1.35996 0.99593 0.87012 0.78990 0.86530 0.77996 1.20281 1.21028 1.18423 1.21932 0.78728 0.84521 0.83626 1.90582 1.36019 1.25275 1.86039 1.44180 1.48207 1.36498 1.04812 1.17926 0.95054 0.91867 0.87017 1.21181 0.99324 0.93375 0.99105 1.20926 0.98685 0.99655 0.92060 1.18098 1.01222 0.92934 0.94912 1.21009 0.98180 0.99649 0.92653 1.20750 1.01755 0.94104 0.98581 1.20773 0.99709 0.94831 0.98297 1.20959 0.99911 0.99446 0.92713 1.17793 0.98469 0.92627 0.93929 1.20902 1.04757 0.99128 0.93618 0.92981 0.95428 0.92188 0.92470 0.75720 0.83771 0.85375 0.85850 0.86410 0.86383 0.85881 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.61 37.16 0.32 -2.30 16 2 C 0.00 -0.04 2.18 -92.92 -0.20 -0.24 16 3 H 0.06 1.24 5.72 -51.93 -0.30 0.94 16 4 C -0.50 -14.07 8.52 -34.44 -0.29 -14.37 16 5 H 0.09 2.84 7.34 -52.49 -0.39 2.46 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 8 Si 0.87 20.25 26.35 -169.99 -4.48 15.78 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.26 -5.48 5.97 56.52 0.34 -5.14 16 12 C 0.52 11.09 6.98 -10.98 -0.08 11.02 16 13 O -0.51 -12.57 13.03 5.55 0.07 -12.49 16 14 N -0.69 -11.41 5.24 -9.88 -0.05 -11.46 16 15 C 0.18 2.86 6.28 -83.73 -0.53 2.33 16 16 C -0.11 -1.84 8.59 -39.76 -0.34 -2.18 16 17 C -0.09 -1.34 9.75 -39.53 -0.39 -1.73 16 18 C -0.07 -0.97 5.74 -106.80 -0.61 -1.58 16 19 C -0.10 -1.09 9.76 -39.48 -0.39 -1.48 16 20 C -0.13 -1.34 9.95 -39.93 -0.40 -1.74 16 21 C -0.12 -1.18 9.95 -39.93 -0.40 -1.58 16 22 C -0.11 -1.26 9.77 -39.47 -0.39 -1.64 16 23 C -0.03 -0.37 5.74 -106.84 -0.61 -0.99 16 24 C -0.16 -2.25 9.71 -38.95 -0.38 -2.63 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.41 7.61 -51.93 -0.40 0.02 16 27 H 0.06 1.18 6.90 -51.93 -0.36 0.83 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.41 5.35 8.21 -40.82 -0.34 5.02 16 30 H 0.14 2.68 6.18 -52.49 -0.32 2.36 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -32.55 302.51 -8.15 -40.71 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.25 Total: 6.28 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -4.77 Total: -17.13 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.72 Total: -37.70 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.07 Total: -12.49 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.48 Total: 15.78 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.55 -8.15 -40.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354121674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.715 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds