Wall clock time and date at job start Mon Mar 30 2020 00:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47438 * 2 1 4 4 C 1.50695 * 109.47197 * 239.99347 * 2 1 3 5 5 H 1.07994 * 120.00693 * 265.10047 * 4 2 1 6 6 C 1.37882 * 119.99816 * 85.10278 * 4 2 1 7 7 N 1.31509 * 120.00065 * 185.00330 * 6 4 2 8 8 Si 1.86803 * 119.99750 * 5.01204 * 6 4 2 9 9 H 1.48498 * 109.47469 * 94.94954 * 8 6 4 10 10 H 1.48503 * 109.46670 * 214.94817 * 8 6 4 11 11 H 1.48503 * 109.47040 * 334.94521 * 8 6 4 12 12 C 1.50704 * 109.46586 * 119.99533 * 2 1 3 13 13 O 1.21287 * 119.99564 * 120.00217 * 12 2 1 14 14 N 1.34774 * 120.00497 * 299.99969 * 12 2 1 15 15 C 1.39872 * 120.00132 * 184.52564 * 14 12 2 16 16 C 1.39993 * 119.66231 * 324.78751 * 15 14 12 17 17 C 1.35912 * 120.92582 * 180.02562 * 16 15 14 18 18 C 1.40595 * 119.89533 * 0.02562 * 17 16 15 19 19 C 1.40540 * 121.13190 * 180.02562 * 18 17 16 20 20 C 1.36105 * 119.68873 * 179.97438 * 19 18 17 21 21 C 1.39374 * 120.99837 * 0.02562 * 20 19 18 22 22 C 1.36085 * 120.97120 * 359.97438 * 21 20 19 23 23 C 1.40595 * 119.66033 * 359.97438 * 22 21 20 24 24 C 1.37699 * 119.65496 * 144.80535 * 15 14 12 25 25 H 1.08999 * 109.46790 * 185.00511 * 1 2 3 26 26 H 1.08993 * 109.47353 * 305.01236 * 1 2 3 27 27 H 1.08995 * 109.46679 * 65.00955 * 1 2 3 28 28 H 0.96998 * 120.00188 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99941 * 4.53412 * 14 12 2 30 30 H 1.07998 * 119.53789 * 0.04165 * 16 15 14 31 31 H 1.07994 * 120.05487 * 179.97438 * 17 16 15 32 32 H 1.07997 * 120.15879 * 359.96103 * 19 18 17 33 33 H 1.08000 * 119.49790 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.51132 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.17001 * 180.27744 * 22 21 20 36 36 H 1.08004 * 120.24709 * 359.96200 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2877 -1.7587 -1.1822 6 6 2.1661 -0.0223 -2.4176 7 7 2.5097 -0.6625 -3.5137 8 14 1.8593 1.8197 -2.4690 9 1 3.1483 2.5408 -2.3148 10 1 1.2417 2.1824 -3.7699 11 1 0.9439 2.2001 -1.3633 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2499 2.4547 15 6 2.2489 -0.8512 3.5952 16 6 2.4753 -2.2327 3.6088 17 6 3.0005 -2.8437 4.7034 18 6 3.3232 -2.0849 5.8421 19 6 3.8680 -2.6897 6.9878 20 6 4.1700 -1.9270 8.0738 21 6 3.9470 -0.5512 8.0692 22 6 3.4210 0.0693 6.9782 23 6 3.0973 -0.6856 5.8371 24 6 2.5542 -0.0783 4.6931 25 1 -0.3633 -1.0238 0.0897 26 1 -0.3634 0.5896 0.8416 27 1 -0.3632 0.4341 -0.9314 28 1 2.6034 -0.1784 -4.3490 29 1 1.0962 0.4985 2.5447 30 1 2.2293 -2.8211 2.7373 31 1 3.1689 -3.9104 4.6987 32 1 4.0459 -3.7548 7.0065 33 1 4.5889 -2.3949 8.9524 34 1 4.1959 0.0311 8.9441 35 1 3.2577 1.1368 6.9870 36 1 2.3770 0.9869 4.6748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354121674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:21 Heat of formation + Delta-G solvation = -16.896331 kcal Electronic energy + Delta-G solvation = -19307.954465 eV Core-core repulsion = 16334.682452 eV Total energy + Delta-G solvation = -2973.272013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71996 -40.52871 -37.60998 -35.75141 -35.17784 -33.54139 -33.15116 -30.63095 -29.60100 -27.21093 -25.24613 -24.35168 -23.23584 -22.89721 -21.10663 -19.26793 -18.89290 -18.21008 -17.82949 -16.98933 -16.53003 -16.02886 -15.71325 -15.50166 -15.19583 -14.67998 -14.58559 -14.41962 -14.19830 -14.08819 -13.86281 -13.27004 -12.96757 -12.95340 -12.56607 -12.50945 -12.27359 -12.11598 -11.74581 -11.66700 -11.25276 -11.18133 -10.76042 -10.59090 -10.47606 -9.23512 -8.60634 -8.28006 -6.35793 -0.39272 0.06561 1.11967 1.37223 1.39468 1.50912 1.66798 2.09875 2.26940 2.36042 3.07573 3.21368 3.70183 3.95570 3.99424 4.09278 4.21768 4.31040 4.38721 4.41004 4.48019 4.52869 4.68904 4.80981 4.82532 4.96172 5.06466 5.09966 5.22198 5.31554 5.41883 5.47899 5.54751 5.56585 5.65284 5.69883 5.96326 6.15061 6.22919 6.57163 6.78581 7.23967 7.35929 8.89777 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.004008 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.841219 B = 6984.750075 C = 7307.023284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.004 4.004 3 H 0.077 0.923 4 C -0.515 4.515 5 H 0.024 0.976 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.944 3.056 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.213 1.213 12 C 0.521 3.479 13 O -0.559 6.559 14 N -0.668 5.668 15 C 0.141 3.859 16 C -0.140 4.140 17 C -0.095 4.095 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.049 4.049 24 C -0.142 4.142 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.425 0.575 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 5.330 25.254 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.554 4.554 5 H 0.043 0.957 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.766 3.234 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.135 1.135 12 C 0.311 3.689 13 O -0.435 6.435 14 N -0.315 5.315 15 C 0.047 3.953 16 C -0.160 4.160 17 C -0.114 4.114 18 C -0.086 4.086 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.050 4.050 24 C -0.163 4.163 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.264 0.736 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.363 4.657 24.901 25.369 hybrid contribution -0.075 0.282 -1.164 1.200 sum -1.438 4.939 23.737 24.288 Atomic orbital electron populations 1.21923 0.93635 1.01194 1.02209 1.19330 0.96265 0.97227 0.89740 0.90514 1.20926 1.43996 0.96885 0.93549 0.95712 1.26060 0.94040 1.04414 0.94437 1.70080 1.49654 1.38771 1.00615 0.85809 0.79842 0.78252 0.79529 1.19969 1.20945 1.13507 1.21677 0.78299 0.83907 0.84971 1.90577 1.38537 1.27466 1.86928 1.43659 1.47934 1.36424 1.03503 1.18011 0.97798 0.91901 0.87624 1.21027 1.01838 0.94136 0.98992 1.21102 0.97902 1.00547 0.91829 1.18369 1.01475 0.93437 0.95305 1.21274 0.98463 1.00956 0.92329 1.21211 0.99820 0.94351 0.98884 1.21243 0.97923 0.95103 0.98906 1.21268 0.99628 1.00669 0.92019 1.18128 0.99037 0.92940 0.94857 1.21184 1.02501 1.00206 0.92442 0.94167 0.90171 0.92431 0.92375 0.73566 0.87176 0.84035 0.84111 0.83350 0.83103 0.83408 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.61 71.98 0.62 -4.17 16 2 C 0.00 -0.18 2.18 -12.28 -0.03 -0.20 16 3 H 0.08 3.12 5.72 -2.39 -0.01 3.10 16 4 C -0.52 -30.35 8.52 25.60 0.22 -30.13 16 5 H 0.02 1.72 7.34 -2.91 -0.02 1.70 16 6 C 0.01 0.41 5.47 84.66 0.46 0.88 16 7 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 8 Si 0.94 41.38 26.35 68.60 1.81 43.18 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.21 -7.69 5.97 99.48 0.59 -7.10 16 12 C 0.52 22.82 6.98 87.66 0.61 23.43 16 13 O -0.56 -29.93 13.03 -3.05 -0.04 -29.97 16 14 N -0.67 -21.66 5.24 -303.56 -1.59 -23.25 16 15 C 0.14 4.56 6.28 38.16 0.24 4.80 16 16 C -0.14 -4.96 8.59 22.16 0.19 -4.77 16 17 C -0.10 -2.79 9.75 22.30 0.22 -2.58 16 18 C -0.09 -2.22 5.74 -21.28 -0.12 -2.35 16 19 C -0.11 -2.25 9.76 22.33 0.22 -2.03 16 20 C -0.12 -1.98 9.95 22.05 0.22 -1.76 16 21 C -0.11 -1.73 9.95 22.04 0.22 -1.51 16 22 C -0.12 -2.16 9.77 22.34 0.22 -1.94 16 23 C -0.05 -1.21 5.74 -21.30 -0.12 -1.33 16 24 C -0.14 -3.66 9.71 22.68 0.22 -3.44 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 2.08 7.61 -2.39 -0.02 2.06 16 27 H 0.06 2.12 6.90 -2.39 -0.02 2.11 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.43 10.04 8.21 -92.71 -0.76 9.28 16 30 H 0.11 4.58 6.18 -2.91 -0.02 4.57 16 31 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -78.94 302.51 4.09 -74.85 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.23 Total: 22.71 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 3.38 Total: -27.11 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.29 Total: -83.66 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.04 Total: -29.97 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.81 Total: 43.18 kcal Total: -78.94 4.09 -74.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354121674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.952 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds