Wall clock time and date at job start Mon Mar 30 2020 00:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46891 * 2 1 4 4 C 1.50704 * 109.46886 * 119.99395 * 2 1 3 5 5 H 1.08001 * 119.99623 * 120.00504 * 4 2 1 6 6 C 1.37878 * 119.99945 * 300.00236 * 4 2 1 7 7 N 1.31505 * 120.00191 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99394 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46792 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47257 * 299.99965 * 8 6 4 11 11 H 1.48503 * 109.47331 * 60.00472 * 8 6 4 12 12 C 1.50693 * 109.47135 * 239.99741 * 2 1 3 13 13 O 1.21293 * 119.99764 * 239.99847 * 12 2 1 14 14 N 1.34771 * 120.00402 * 59.99887 * 12 2 1 15 15 C 1.39872 * 120.00496 * 174.72916 * 14 12 2 16 16 C 1.40006 * 119.65581 * 326.16518 * 15 14 12 17 17 C 1.35917 * 120.92137 * 179.74957 * 16 15 14 18 18 C 1.40593 * 119.89645 * 0.52679 * 17 16 15 19 19 C 1.40537 * 121.13265 * 179.72004 * 18 17 16 20 20 C 1.36109 * 119.69151 * 180.02562 * 19 18 17 21 21 C 1.39376 * 120.99580 * 359.97438 * 20 19 18 22 22 C 1.36086 * 120.96805 * 359.97438 * 21 20 19 23 23 C 1.40593 * 119.66325 * 0.02562 * 22 21 20 24 24 C 1.37694 * 119.66386 * 146.44255 * 15 14 12 25 25 H 1.08998 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47314 * 300.00154 * 1 2 3 27 27 H 1.08997 * 109.46939 * 60.00314 * 1 2 3 28 28 H 0.96999 * 119.99974 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00173 * 354.73210 * 14 12 2 30 30 H 1.08002 * 119.53619 * 0.02562 * 16 15 14 31 31 H 1.07995 * 120.04745 * 180.28654 * 17 16 15 32 32 H 1.08000 * 120.16115 * 0.02562 * 19 18 17 33 33 H 1.07996 * 119.50013 * 180.02562 * 20 19 18 34 34 H 1.07997 * 119.51212 * 180.02562 * 21 20 19 35 35 H 1.07999 * 120.16527 * 179.97438 * 22 21 20 36 36 H 1.08006 * 120.24624 * 359.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 1.8278 -0.4188 5.2205 10 1 1.8280 -2.5195 4.0083 11 1 3.8075 -1.1186 4.0079 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6966 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 2.2612 -0.8415 -3.5944 16 6 3.5671 -1.3441 -3.5485 17 6 4.1294 -1.9283 -4.6394 18 6 3.4000 -2.0233 -5.8375 19 6 3.9580 -2.6169 -6.9827 20 6 3.2257 -2.6929 -8.1275 21 6 1.9267 -2.1906 -8.1833 22 6 1.3531 -1.6101 -7.0944 23 6 2.0787 -1.5135 -5.8940 24 6 1.5191 -0.9182 -4.7517 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1616 3.4843 29 1 1.0880 0.4914 -2.5451 30 1 4.1341 -1.2704 -2.6322 31 1 5.1362 -2.3153 -4.5869 32 1 4.9631 -3.0109 -6.9546 33 1 3.6573 -3.1500 -9.0055 34 1 1.3671 -2.2640 -9.1040 35 1 0.3458 -1.2249 -7.1522 36 1 0.5137 -0.5246 -4.7804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354121676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:23 Heat of formation + Delta-G solvation = -17.135948 kcal Electronic energy + Delta-G solvation = -19265.103435 eV Core-core repulsion = 16291.821031 eV Total energy + Delta-G solvation = -2973.282403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69704 -40.49788 -37.60530 -35.84184 -35.17486 -33.44975 -32.54178 -30.59766 -29.53908 -27.23690 -25.17712 -24.36993 -23.31470 -22.89568 -21.19421 -19.15848 -18.26894 -18.20409 -17.85406 -16.98410 -16.54499 -15.98625 -15.85707 -15.53826 -15.00423 -14.73875 -14.50473 -14.45292 -14.16678 -13.97574 -13.51160 -13.08173 -12.94212 -12.77216 -12.63056 -12.52320 -12.23984 -12.11299 -12.03447 -11.74087 -11.19433 -11.08792 -10.65668 -10.58257 -10.37024 -9.22253 -8.60071 -8.18115 -6.28919 -0.38894 0.06309 1.12144 1.40703 1.41819 1.50363 1.67275 2.13569 2.27297 2.45802 3.11912 3.21818 3.69902 3.96040 4.05690 4.09224 4.25091 4.31093 4.41489 4.47316 4.55309 4.70333 4.81899 4.89075 4.94166 4.97576 5.07255 5.20857 5.31430 5.40853 5.45554 5.54779 5.65363 5.68830 5.71839 5.88912 5.97823 6.15272 6.15972 6.58721 6.79519 7.29822 7.41890 8.87689 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043911 B = 0.003794 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.498111 B = 7377.337920 C = 7849.573683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.028 3.972 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.561 6.561 14 N -0.671 5.671 15 C 0.144 3.856 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.087 4.087 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.047 4.047 24 C -0.148 4.148 25 H 0.023 0.977 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.266 0.734 29 H 0.422 0.578 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -2.201 -21.510 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.006 3.994 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.438 6.438 14 N -0.318 5.318 15 C 0.050 3.950 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.048 4.048 24 C -0.169 4.169 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.260 0.740 30 H 0.126 0.874 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.982 -2.741 -21.192 21.391 hybrid contribution 0.129 0.050 1.414 1.421 sum 1.111 -2.691 -19.778 19.991 Atomic orbital electron populations 1.21601 0.94747 0.99643 1.02093 1.18831 0.95605 0.96024 0.88898 0.93493 1.21245 1.31962 1.12920 0.91018 0.93178 1.25574 0.95099 0.95697 1.01390 1.69925 1.36997 1.23436 1.24519 0.85648 0.78690 0.78723 0.78814 1.19877 1.20185 1.20157 1.21849 0.78236 0.83492 0.85112 1.90531 1.38832 1.27302 1.87092 1.43756 1.47634 1.36493 1.03882 1.18044 0.92433 0.97190 0.87382 1.20899 0.94462 1.01226 0.99351 1.21098 1.00476 0.97990 0.91329 1.18362 0.94339 1.01087 0.94951 1.21280 1.00900 0.98605 0.91977 1.21215 0.94769 0.99813 0.98543 1.21241 0.95595 0.97030 0.99152 1.21255 1.00583 1.00470 0.91520 1.18123 0.93853 0.98273 0.94551 1.21147 1.00136 1.03924 0.91697 0.95736 0.90762 0.92653 0.92467 0.73970 0.87395 0.83638 0.83881 0.83239 0.83106 0.83641 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.86 71.98 0.64 -4.86 16 2 C 0.03 1.38 2.65 -12.29 -0.03 1.34 16 3 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 4 C -0.53 -30.71 8.37 25.60 0.21 -30.49 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -50.65 11.32 21.45 0.24 -50.41 16 8 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.52 24.15 6.87 87.66 0.60 24.75 16 13 O -0.56 -29.80 13.14 -3.07 -0.04 -29.84 16 14 N -0.67 -24.07 5.25 -303.56 -1.59 -25.66 16 15 C 0.14 4.93 6.25 38.16 0.24 5.17 16 16 C -0.14 -5.02 8.55 22.16 0.19 -4.83 16 17 C -0.09 -2.65 9.75 22.31 0.22 -2.44 16 18 C -0.09 -2.30 5.74 -21.28 -0.12 -2.42 16 19 C -0.11 -2.20 9.76 22.33 0.22 -1.98 16 20 C -0.13 -2.02 9.95 22.05 0.22 -1.80 16 21 C -0.11 -1.78 9.95 22.04 0.22 -1.56 16 22 C -0.12 -2.34 9.77 22.34 0.22 -2.12 16 23 C -0.05 -1.23 5.74 -21.30 -0.12 -1.35 16 24 C -0.15 -4.10 9.70 22.68 0.22 -3.88 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 26 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 27 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 28 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.42 12.20 8.09 -92.70 -0.75 11.45 16 30 H 0.11 4.47 6.40 -2.91 -0.02 4.45 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -68.88 305.49 4.35 -64.52 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.35 Total: 19.40 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 3.37 Total: -24.80 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.35 Total: -76.08 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.88 4.35 -64.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354121676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.387 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds