Wall clock time and date at job start Mon Mar 30 2020 01:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31796 * 119.08385 * 2 1 4 4 C 1.32546 * 121.00947 * 179.75465 * 3 2 1 5 5 C 1.38129 * 119.19997 * 0.48179 * 4 3 2 6 6 C 1.50695 * 120.83577 * 179.78787 * 5 4 3 7 7 C 1.39612 * 118.32926 * 359.51147 * 5 4 3 8 8 N 1.38650 * 120.53297 * 180.23499 * 7 5 4 9 9 C 1.39796 * 120.00642 * 174.77807 * 8 7 5 10 10 C 1.39329 * 119.94763 * 326.06192 * 9 8 7 11 11 C 1.38478 * 120.42352 * 179.76047 * 10 9 8 12 12 C 1.37685 * 120.32565 * 0.51308 * 11 10 9 13 13 C 1.40757 * 119.89207 * 359.74568 * 12 11 10 14 14 C 1.41405 * 120.20721 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99781 * 205.17091 * 14 13 12 16 16 C 1.39928 * 120.00047 * 25.18209 * 14 13 12 17 17 N 1.30833 * 120.00167 * 16.76056 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 196.76917 * 16 14 13 19 19 H 1.48500 * 109.47228 * 59.99293 * 18 16 14 20 20 H 1.48501 * 109.47375 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47015 * 299.99540 * 18 16 14 22 22 C 1.38272 * 119.95433 * 146.33482 * 9 8 7 23 23 N 1.31737 * 119.08215 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46924 * 270.02112 * 1 2 3 25 25 H 1.09000 * 109.47464 * 30.01815 * 1 2 3 26 26 H 1.08997 * 109.47593 * 150.02268 * 1 2 3 27 27 H 1.08005 * 120.39890 * 180.26265 * 4 3 2 28 28 H 1.08996 * 109.47383 * 269.71646 * 6 5 4 29 29 H 1.09000 * 109.47250 * 149.71529 * 6 5 4 30 30 H 1.09008 * 109.46874 * 29.71633 * 6 5 4 31 31 H 0.97004 * 119.99779 * 354.77714 * 8 7 5 32 32 H 1.08006 * 119.78526 * 0.02562 * 10 9 8 33 33 H 1.07999 * 119.83749 * 180.23533 * 11 10 9 34 34 H 1.07998 * 120.05557 * 179.76347 * 12 11 10 35 35 H 0.97000 * 119.99815 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.15968 * 359.95591 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1963 0.0049 5 6 4.1864 0.0139 -0.0001 6 6 5.6933 0.0216 0.0003 7 6 3.4769 -1.1885 0.0003 8 7 4.1474 -2.4020 0.0003 9 6 3.4304 -3.5970 0.1109 10 6 2.2715 -3.6438 0.8829 11 6 1.5509 -4.8210 0.9953 12 6 1.9781 -5.9616 0.3532 13 6 3.1500 -5.9309 -0.4258 14 6 3.5945 -7.0983 -1.0885 15 1 4.6398 -7.2154 -1.3332 16 6 2.6800 -8.1017 -1.4275 17 7 1.3978 -7.8414 -1.4392 18 14 3.2896 -9.8128 -1.8630 19 1 4.0350 -10.3808 -0.7110 20 1 2.1307 -10.6852 -2.1809 21 1 4.1879 -9.7328 -3.0428 22 6 3.8754 -4.7321 -0.5414 23 7 2.1473 -1.1513 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 3.9872 2.1457 0.0091 28 1 6.0570 0.0229 -1.0272 29 1 6.0610 -0.8663 0.5148 30 1 6.0519 0.9137 0.5138 31 1 5.1142 -2.4219 -0.0765 32 1 1.9306 -2.7552 1.3934 33 1 0.6518 -4.8456 1.5931 34 1 1.4148 -6.8783 0.4470 35 1 0.7639 -8.5371 -1.6738 36 1 4.7756 -4.6978 -1.1370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472785861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:33 Heat of formation + Delta-G solvation = 66.795445 kcal Electronic energy + Delta-G solvation = -19474.780190 eV Core-core repulsion = 16537.430076 eV Total energy + Delta-G solvation = -2937.350114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84814 -38.01699 -35.80321 -34.02484 -33.32527 -31.77030 -30.03883 -29.78065 -27.95371 -25.63761 -25.25652 -23.58044 -21.87171 -20.77594 -20.43529 -18.06020 -17.40830 -16.54248 -15.41971 -15.23187 -15.09275 -14.60990 -14.19390 -14.03143 -13.49996 -13.25862 -13.03862 -12.77107 -12.46522 -12.36775 -12.19787 -12.13213 -11.77104 -11.55039 -11.14421 -10.97401 -10.72058 -10.46594 -10.37220 -10.02166 -9.59035 -9.30704 -9.14114 -8.69122 -8.32246 -7.46042 -6.80814 -6.67091 -4.36428 1.24340 1.58284 2.82081 2.99773 3.06628 3.08849 3.24993 3.46246 3.93569 4.11714 4.33962 4.56015 4.65759 4.88062 5.06037 5.23181 5.53073 5.55050 5.67880 5.74577 5.80309 5.86825 6.01182 6.12195 6.25718 6.52720 6.67027 6.87362 6.95871 6.99524 7.05782 7.25839 7.37699 7.60216 7.76735 8.01954 8.06449 8.17110 8.31503 8.62041 8.66613 8.89124 8.96517 10.20775 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.004483 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.288748 B = 6244.130290 C = 6876.832229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.345 3.655 3 N -0.569 5.569 4 C 0.171 3.829 5 C -0.273 4.273 6 C -0.094 4.094 7 C 0.441 3.559 8 N -0.641 5.641 9 C 0.157 3.843 10 C -0.217 4.217 11 C -0.095 4.095 12 C -0.167 4.167 13 C 0.123 3.877 14 C -0.466 4.466 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.246 4.246 23 N -0.543 5.543 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.410 0.590 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.280 0.720 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 11.073 2.372 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 N -0.288 5.288 4 C 0.009 3.991 5 C -0.283 4.283 6 C -0.152 4.152 7 C 0.197 3.803 8 N -0.264 5.264 9 C 0.065 3.935 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.187 4.187 13 C 0.120 3.880 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.420 5.420 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.268 4.268 23 N -0.266 5.266 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.176 0.824 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.248 0.752 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.046 10.824 2.315 11.257 hybrid contribution 1.574 -0.814 -0.392 1.815 sum 3.620 10.010 1.923 10.817 Atomic orbital electron populations 1.20513 0.86216 1.03839 1.03523 1.22998 0.97743 0.82796 0.88792 1.68210 1.09614 1.30074 1.20899 1.22650 0.89488 0.96979 0.90013 1.20861 0.98179 0.93730 1.15551 1.20441 0.89993 1.02646 1.02090 1.18446 0.88614 0.85861 0.87375 1.42209 1.08476 1.01942 1.73819 1.17436 0.94463 0.83522 0.98098 1.20269 0.98771 0.97897 1.06884 1.20559 0.97955 0.93297 0.99622 1.21365 0.99836 0.97618 0.99913 1.17336 0.90708 0.90870 0.89053 1.19469 0.95467 1.00777 1.33900 0.90618 1.25870 0.94433 1.00517 0.93231 1.69825 1.02508 1.34522 1.35133 0.86379 0.79205 0.81377 0.79793 1.18863 1.20346 1.19103 1.20674 1.05290 0.92773 1.08073 1.68220 1.07271 1.29931 1.21209 0.89976 0.90053 0.89579 0.82369 0.91442 0.91998 0.91219 0.75203 0.88048 0.89134 0.86364 0.90859 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.32 36.00 0.37 -0.72 16 2 C 0.35 5.82 7.64 -157.24 -1.20 4.62 16 3 N -0.57 -8.96 10.33 -10.81 -0.11 -9.07 16 4 C 0.17 2.34 10.99 -17.28 -0.19 2.15 16 5 C -0.27 -3.90 5.93 -104.15 -0.62 -4.52 16 6 C -0.09 -0.96 9.61 36.00 0.35 -0.62 16 7 C 0.44 7.92 7.21 -154.66 -1.11 6.81 16 8 N -0.64 -11.80 5.36 -9.88 -0.05 -11.86 16 9 C 0.16 3.53 6.28 -83.81 -0.53 3.01 16 10 C -0.22 -5.01 8.60 -39.09 -0.34 -5.35 16 11 C -0.10 -2.27 10.01 -39.69 -0.40 -2.67 16 12 C -0.17 -4.36 8.69 -38.83 -0.34 -4.69 16 13 C 0.12 3.27 5.57 -106.85 -0.59 2.67 16 14 C -0.47 -12.29 9.05 -37.74 -0.34 -12.63 16 15 H 0.08 1.91 7.90 -52.49 -0.41 1.49 16 16 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 17 N -0.79 -20.58 10.94 55.55 0.61 -19.97 16 18 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.25 -5.96 9.70 -38.68 -0.38 -6.34 16 23 N -0.54 -10.49 7.19 -9.94 -0.07 -10.56 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.63 6.76 -51.93 -0.35 0.27 16 30 H 0.07 0.57 8.10 -51.92 -0.42 0.15 16 31 H 0.41 6.28 7.02 -40.82 -0.29 6.00 16 32 H 0.10 2.28 6.30 -52.48 -0.33 1.95 16 33 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -29.80 306.77 -9.66 -39.47 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.22 Total: 10.25 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -5.41 Total: -16.44 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.37 Total: -51.46 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.80 -9.66 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472785861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.262 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds