Wall clock time and date at job start Mon Mar 30 2020 01:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31796 * 119.08385 * 2 1 4 4 C 1.32546 * 121.00947 * 179.75465 * 3 2 1 5 5 C 1.38129 * 119.19997 * 0.48179 * 4 3 2 6 6 C 1.50695 * 120.83577 * 179.78787 * 5 4 3 7 7 C 1.39612 * 118.32926 * 359.51147 * 5 4 3 8 8 N 1.38650 * 120.53297 * 180.23499 * 7 5 4 9 9 C 1.39796 * 120.00642 * 174.77807 * 8 7 5 10 10 C 1.39329 * 119.94763 * 326.06192 * 9 8 7 11 11 C 1.38478 * 120.42352 * 179.76047 * 10 9 8 12 12 C 1.37685 * 120.32565 * 0.51308 * 11 10 9 13 13 C 1.40757 * 119.89207 * 359.74568 * 12 11 10 14 14 C 1.41405 * 120.20721 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99781 * 205.17091 * 14 13 12 16 16 C 1.39928 * 120.00047 * 25.18209 * 14 13 12 17 17 N 1.30833 * 120.00167 * 16.76056 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 196.76917 * 16 14 13 19 19 H 1.48500 * 109.47228 * 59.99293 * 18 16 14 20 20 H 1.48501 * 109.47375 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47015 * 299.99540 * 18 16 14 22 22 C 1.38272 * 119.95433 * 146.33482 * 9 8 7 23 23 N 1.31737 * 119.08215 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46924 * 270.02112 * 1 2 3 25 25 H 1.09000 * 109.47464 * 30.01815 * 1 2 3 26 26 H 1.08997 * 109.47593 * 150.02268 * 1 2 3 27 27 H 1.08005 * 120.39890 * 180.26265 * 4 3 2 28 28 H 1.08996 * 109.47383 * 269.71646 * 6 5 4 29 29 H 1.09000 * 109.47250 * 149.71529 * 6 5 4 30 30 H 1.09008 * 109.46874 * 29.71633 * 6 5 4 31 31 H 0.97004 * 119.99779 * 354.77714 * 8 7 5 32 32 H 1.08006 * 119.78526 * 0.02562 * 10 9 8 33 33 H 1.07999 * 119.83749 * 180.23533 * 11 10 9 34 34 H 1.07998 * 120.05557 * 179.76347 * 12 11 10 35 35 H 0.97000 * 119.99815 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.15968 * 359.95591 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1963 0.0049 5 6 4.1864 0.0139 -0.0001 6 6 5.6933 0.0216 0.0003 7 6 3.4769 -1.1885 0.0003 8 7 4.1474 -2.4020 0.0003 9 6 3.4304 -3.5970 0.1109 10 6 2.2715 -3.6438 0.8829 11 6 1.5509 -4.8210 0.9953 12 6 1.9781 -5.9616 0.3532 13 6 3.1500 -5.9309 -0.4258 14 6 3.5945 -7.0983 -1.0885 15 1 4.6398 -7.2154 -1.3332 16 6 2.6800 -8.1017 -1.4275 17 7 1.3978 -7.8414 -1.4392 18 14 3.2896 -9.8128 -1.8630 19 1 4.0350 -10.3808 -0.7110 20 1 2.1307 -10.6852 -2.1809 21 1 4.1879 -9.7328 -3.0428 22 6 3.8754 -4.7321 -0.5414 23 7 2.1473 -1.1513 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 3.9872 2.1457 0.0091 28 1 6.0570 0.0229 -1.0272 29 1 6.0610 -0.8663 0.5148 30 1 6.0519 0.9137 0.5138 31 1 5.1142 -2.4219 -0.0765 32 1 1.9306 -2.7552 1.3934 33 1 0.6518 -4.8456 1.5931 34 1 1.4148 -6.8783 0.4470 35 1 0.7639 -8.5371 -1.6738 36 1 4.7756 -4.6978 -1.1370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472785861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:32 Heat of formation + Delta-G solvation = 51.437748 kcal Electronic energy + Delta-G solvation = -19475.446150 eV Core-core repulsion = 16537.430076 eV Total energy + Delta-G solvation = -2938.016074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10404 -39.72949 -37.35645 -35.44020 -34.86991 -33.20585 -31.74813 -31.01591 -29.64575 -27.17711 -26.64518 -24.93077 -23.27580 -22.47405 -22.12245 -19.68592 -18.76959 -18.09679 -17.20337 -16.68816 -16.58330 -16.18811 -15.53590 -15.22270 -15.08590 -14.62320 -14.31441 -14.09537 -14.05799 -13.65238 -13.40480 -13.23723 -13.10410 -12.99797 -12.88803 -12.72661 -12.30861 -12.11460 -11.90087 -11.57182 -11.38334 -11.04123 -10.70946 -10.00229 -9.75671 -9.37620 -8.64045 -8.38622 -6.34416 0.05266 0.29479 1.00575 1.19225 1.39288 1.50753 1.57088 2.08236 2.22961 2.74049 2.91963 3.20349 3.40435 3.73237 3.77122 4.07243 4.21678 4.43634 4.48946 4.70671 4.73715 4.78133 4.79358 4.96688 4.99693 5.04060 5.09377 5.16421 5.20728 5.32680 5.40830 5.56099 5.83587 5.88866 6.04332 6.12017 6.20102 6.46461 6.68463 6.73649 6.94620 7.04408 7.39633 8.35879 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.004483 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.288748 B = 6244.130290 C = 6876.832229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.326 3.674 3 N -0.570 5.570 4 C 0.169 3.831 5 C -0.259 4.259 6 C -0.093 4.093 7 C 0.411 3.589 8 N -0.642 5.642 9 C 0.172 3.828 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.196 4.196 13 C 0.096 3.904 14 C -0.501 4.501 15 H 0.077 0.923 16 C 0.036 3.964 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.262 4.262 23 N -0.582 5.582 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.204 0.796 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.423 0.577 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.287 0.713 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 12.710 2.302 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.289 5.289 4 C 0.007 3.993 5 C -0.269 4.269 6 C -0.151 4.151 7 C 0.169 3.831 8 N -0.269 5.269 9 C 0.078 3.922 10 C -0.243 4.243 11 C -0.114 4.114 12 C -0.216 4.216 13 C 0.093 3.907 14 C -0.530 4.530 15 H 0.095 0.905 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.284 4.284 23 N -0.305 5.305 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.220 0.780 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.264 0.736 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.289 12.523 2.248 13.142 hybrid contribution 1.191 -1.062 -0.349 1.633 sum 4.480 11.461 1.899 12.451 Atomic orbital electron populations 1.20583 0.84513 1.04209 1.04469 1.23517 0.99014 0.82589 0.89071 1.68296 1.10867 1.29390 1.20362 1.23432 0.88894 0.98540 0.88437 1.21276 1.00281 0.92279 1.13055 1.20569 0.86961 1.04192 1.03373 1.18834 0.88870 0.86586 0.88850 1.42014 1.08924 1.00993 1.74920 1.17428 0.93995 0.84589 0.96172 1.20405 0.99132 0.97703 1.07065 1.20786 0.98529 0.92972 0.99151 1.21286 1.00601 0.97857 1.01905 1.17700 0.91419 0.92001 0.89536 1.19761 0.95943 1.02049 1.35290 0.90487 1.26754 0.94314 1.04276 0.92563 1.69894 1.03728 1.36031 1.35631 0.85244 0.78846 0.75929 0.79615 1.18379 1.19300 1.18415 1.20807 1.05753 0.92953 1.08868 1.68129 1.08492 1.31609 1.22303 0.88685 0.88132 0.90671 0.77963 0.90128 0.91935 0.88239 0.73646 0.87367 0.87278 0.87963 0.90194 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.04 10.32 71.23 0.73 -1.31 16 2 C 0.33 10.64 7.64 138.77 1.06 11.70 16 3 N -0.57 -16.62 10.33 -188.10 -1.94 -18.57 16 4 C 0.17 4.04 10.99 84.56 0.93 4.97 16 5 C -0.26 -6.69 5.93 -19.56 -0.12 -6.81 16 6 C -0.09 -1.57 9.61 71.23 0.68 -0.89 16 7 C 0.41 14.28 7.21 133.12 0.96 15.24 16 8 N -0.64 -23.25 5.36 -185.17 -0.99 -24.24 16 9 C 0.17 7.83 6.28 38.14 0.24 8.07 16 10 C -0.22 -10.38 8.60 22.59 0.19 -10.18 16 11 C -0.10 -4.67 10.01 22.20 0.22 -4.45 16 12 C -0.20 -10.65 8.69 22.75 0.20 -10.45 16 13 C 0.10 5.30 5.57 -21.31 -0.12 5.18 16 14 C -0.50 -27.23 9.05 23.46 0.21 -27.02 16 15 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 16 C 0.04 1.82 5.16 85.25 0.44 2.26 16 17 N -0.83 -44.06 10.94 21.82 0.24 -43.82 16 18 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 C -0.26 -12.99 9.70 22.85 0.22 -12.77 16 23 N -0.58 -22.19 7.19 -185.36 -1.33 -23.53 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.20 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.08 6.76 -2.39 -0.02 1.06 16 30 H 0.10 1.13 8.10 -2.38 -0.02 1.11 16 31 H 0.42 12.52 7.02 -92.71 -0.65 11.87 16 32 H 0.11 4.90 6.30 -2.91 -0.02 4.88 16 33 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.10 5.76 6.16 -2.91 -0.02 5.75 16 35 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 36 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -66.48 306.77 4.32 -62.16 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.46 Total: 34.04 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 5.86 Total: -26.46 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.03 Total: -110.16 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -66.48 4.32 -62.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472785861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.601 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds