Wall clock time and date at job start Mon Mar 30 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99536 * 2 1 4 4 C 1.50707 * 109.46734 * 180.02562 * 3 2 1 5 5 N 1.29948 * 126.28691 * 89.97689 * 4 3 2 6 6 O 1.21299 * 110.25072 * 179.97438 * 5 4 3 7 7 C 1.33641 * 109.81099 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.55020 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46700 * 270.02007 * 8 7 6 10 10 C 1.47962 * 110.99872 * 189.99899 * 9 8 7 11 11 C 1.53936 * 86.18114 * 222.42159 * 10 9 8 12 12 O 1.42894 * 113.73136 * 269.25675 * 11 10 9 13 13 C 1.50704 * 113.73419 * 138.08099 * 11 10 9 14 14 H 1.07997 * 119.99971 * 17.15828 * 13 11 10 15 15 C 1.37875 * 119.99930 * 197.16645 * 13 11 10 16 16 N 1.31517 * 119.99957 * 194.36598 * 15 13 11 17 17 Si 1.86800 * 120.00135 * 14.35819 * 15 13 11 18 18 H 1.48499 * 109.47279 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47539 * 300.00757 * 17 15 13 20 20 H 1.48501 * 109.47023 * 60.00547 * 17 15 13 21 21 C 1.48191 * 111.06779 * 90.56710 * 9 8 7 22 22 N 1.31133 * 106.89570 * 0.22616 * 7 6 5 23 23 H 1.09002 * 109.47184 * 299.99589 * 1 2 3 24 24 H 1.08994 * 109.47207 * 60.00149 * 1 2 3 25 25 H 1.08999 * 109.46651 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47238 * 60.00467 * 3 2 1 27 27 H 1.08999 * 109.46977 * 299.99758 * 3 2 1 28 28 H 1.08997 * 109.47058 * 150.02020 * 8 7 6 29 29 H 1.08996 * 109.46960 * 30.01927 * 8 7 6 30 30 H 1.08999 * 113.75796 * 108.09869 * 10 9 8 31 31 H 1.09006 * 113.85766 * 336.74932 * 10 9 8 32 32 H 0.96707 * 114.00278 * 174.16088 * 12 11 10 33 33 H 0.96997 * 119.99760 * 354.85817 * 16 15 13 34 34 H 1.09000 * 113.75867 * 23.24178 * 21 9 8 35 35 H 1.08991 * 113.82866 * 251.80756 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2787 1.1256 -1.0484 6 8 5.4411 1.0342 -0.7138 7 6 5.5293 1.0273 0.6196 8 6 6.7928 0.9274 1.4349 9 7 7.0943 -0.4858 1.6995 10 6 8.1847 -0.6187 2.6907 11 6 8.7349 -1.7335 1.7829 12 8 8.2479 -3.0360 2.1120 13 6 10.2315 -1.6923 1.6106 14 1 10.8388 -1.1239 2.2994 15 6 10.8252 -2.3799 0.5735 16 7 12.1246 -2.5829 0.5778 17 14 9.7841 -3.0234 -0.8377 18 1 10.6548 -3.7223 -1.8167 19 1 8.7699 -3.9723 -0.3121 20 1 9.0996 -1.8874 -1.5059 21 6 7.9605 -1.0532 0.6395 22 7 4.3060 1.1187 1.0830 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 6.6579 1.4533 2.3800 29 1 7.6178 1.3778 0.8831 30 1 7.8507 -0.9716 3.6664 31 1 8.8323 0.2559 2.7538 32 1 8.5194 -3.7260 1.4912 33 1 12.6752 -2.1858 1.2706 34 1 8.5415 -0.3053 0.0999 35 1 7.4478 -1.7527 -0.0206 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:18 Heat of formation + Delta-G solvation = -1.833364 kcal Electronic energy + Delta-G solvation = -20589.033389 eV Core-core repulsion = 17205.565292 eV Total energy + Delta-G solvation = -3383.468097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.74914 -41.09054 -39.13537 -37.03199 -36.53403 -34.62028 -34.24602 -30.91592 -29.67263 -27.90383 -27.21769 -26.92381 -25.03450 -23.97848 -22.30577 -20.92834 -19.89548 -19.33134 -18.71336 -17.49370 -17.42235 -17.10740 -16.93055 -16.63282 -16.45283 -16.13423 -15.25982 -14.96815 -14.60547 -14.09934 -13.85908 -13.79460 -13.42227 -13.22271 -13.11840 -12.95042 -12.63152 -12.38995 -12.31279 -12.20141 -12.09099 -11.64844 -11.32846 -11.08630 -10.88716 -10.86744 -10.27736 -9.86767 -8.78852 -6.55361 -0.06725 0.90761 1.40282 1.48551 1.64295 1.65832 2.32235 2.38710 2.75789 2.91314 2.94915 3.18301 3.64666 3.73821 3.90009 3.97508 4.02969 4.17275 4.22762 4.36987 4.45636 4.51173 4.53723 4.60750 4.68256 4.79552 4.82260 4.86973 5.14764 5.21229 5.70280 5.91707 5.96674 5.97416 6.44891 6.97113 7.01989 7.28528 8.54761 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029091 B = 0.004497 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.268648 B = 6224.606429 C = 6373.720710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.157 3.843 4 C 0.160 3.840 5 N -0.388 5.388 6 O 0.072 5.928 7 C 0.210 3.790 8 C 0.104 3.896 9 N -0.478 5.478 10 C 0.041 3.959 11 C 0.188 3.812 12 O -0.573 6.573 13 C -0.619 4.619 14 H 0.036 0.964 15 C -0.006 4.006 16 N -0.925 5.925 17 Si 1.071 2.929 18 H -0.290 1.290 19 H -0.255 1.255 20 H -0.247 1.247 21 C -0.034 4.034 22 N -0.480 5.480 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.367 0.633 33 H 0.259 0.741 34 H 0.090 0.910 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.250 9.985 -1.770 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C 0.080 3.920 4 C -0.114 4.114 5 N -0.098 5.098 6 O 0.014 5.986 7 C -0.011 4.011 8 C -0.025 4.025 9 N -0.203 5.203 10 C -0.087 4.087 11 C 0.147 3.853 12 O -0.381 6.381 13 C -0.657 4.657 14 H 0.055 0.945 15 C -0.207 4.207 16 N -0.560 5.560 17 Si 0.893 3.107 18 H -0.216 1.216 19 H -0.180 1.180 20 H -0.171 1.171 21 C -0.163 4.163 22 N -0.215 5.215 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.160 0.840 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.217 0.783 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.659 9.058 -3.015 22.759 hybrid contribution 1.540 1.035 0.944 2.083 sum -19.119 10.094 -2.071 21.719 Atomic orbital electron populations 1.23037 0.77450 1.04406 1.01930 1.87920 1.23078 1.26963 1.95843 1.20630 0.80423 0.86215 1.04776 1.26058 1.00697 1.01133 0.83487 1.74594 0.89933 1.20575 1.24679 1.85285 1.22458 1.65212 1.25644 1.28997 0.97184 0.93578 0.81376 1.21442 0.88087 0.93674 0.99343 1.68495 1.32144 1.12974 1.06656 1.23926 0.90318 0.97594 0.96832 1.20412 0.90625 0.81954 0.92320 1.86353 1.77499 1.18514 1.55739 1.22466 0.92584 1.35920 1.14758 0.94541 1.27055 0.97671 0.94063 1.01872 1.70948 1.06863 1.40439 1.37778 0.83778 0.74387 0.78260 0.74278 1.21587 1.17982 1.17108 1.25195 0.94508 1.00431 0.96205 1.71882 1.00084 1.20043 1.29491 0.91914 0.91932 0.88504 0.87753 0.88158 0.83957 0.87626 0.89281 0.88503 0.78322 0.93178 0.89249 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -10.14 10.69 -148.98 -1.59 -11.73 16 3 C 0.16 3.30 6.56 71.24 0.47 3.77 16 4 C 0.16 4.69 7.85 138.47 1.09 5.78 16 5 N -0.39 -12.38 12.16 -60.32 -0.73 -13.11 16 6 O 0.07 2.30 11.31 74.85 0.85 3.15 16 7 C 0.21 6.35 8.07 88.38 0.71 7.06 16 8 C 0.10 2.80 5.43 85.56 0.46 3.26 16 9 N -0.48 -16.76 6.14 -914.74 -5.62 -22.38 16 10 C 0.04 1.50 7.34 86.41 0.63 2.14 16 11 C 0.19 8.36 1.07 -10.89 -0.01 8.34 16 12 O -0.57 -26.67 13.47 -148.98 -2.01 -28.68 16 13 C -0.62 -32.50 9.04 25.60 0.23 -32.27 16 14 H 0.04 2.08 8.06 -2.91 -0.02 2.06 16 15 C -0.01 -0.30 5.44 84.65 0.46 0.16 16 16 N -0.93 -54.58 13.70 21.45 0.29 -54.29 16 17 Si 1.07 46.16 24.55 68.60 1.68 47.85 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.25 -9.87 5.81 99.48 0.58 -9.29 16 20 H -0.25 -9.57 6.48 99.48 0.64 -8.92 16 21 C -0.03 -1.34 4.73 86.37 0.41 -0.93 16 22 N -0.48 -15.10 11.55 -303.20 -3.50 -18.60 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.14 3.09 8.08 -2.39 -0.02 3.07 16 29 H 0.11 2.43 7.39 -2.39 -0.02 2.41 16 30 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.10 3.16 7.88 -2.38 -0.02 3.14 16 32 H 0.37 16.10 6.07 -74.05 -0.45 15.65 16 33 H 0.26 15.43 8.73 -92.71 -0.81 14.62 16 34 H 0.09 3.32 7.32 -2.39 -0.02 3.30 16 35 H 0.07 2.84 6.86 -2.39 -0.02 2.82 16 Total: -1.00 -68.88 298.71 -4.48 -73.36 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.44 Total: 25.50 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.70 Total: -1.07 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -9.56 Total: -108.38 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.75 Total: -37.26 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.68 Total: 47.85 kcal Total: -68.88 -4.48 -73.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.527 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds