Wall clock time and date at job start Mon Mar 30 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 N 1.31122 * 126.55284 * 89.71287 * 4 3 2 6 6 C 1.34497 * 105.61872 * 179.91712 * 5 4 3 7 7 C 1.50696 * 126.29182 * 180.12727 * 6 5 4 8 8 N 1.46900 * 109.47263 * 270.24087 * 7 6 5 9 9 C 1.47483 * 110.99867 * 265.97020 * 8 7 6 10 10 C 1.53509 * 87.92829 * 221.29594 * 9 8 7 11 11 O 1.42906 * 114.17175 * 272.37398 * 10 9 8 12 12 C 1.50704 * 114.34321 * 139.68762 * 10 9 8 13 13 H 1.08005 * 119.99714 * 266.07418 * 12 10 9 14 14 C 1.37879 * 120.00216 * 86.06865 * 12 10 9 15 15 N 1.31517 * 119.99893 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99893 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47202 * 60.00645 * 16 14 12 18 18 H 1.48500 * 109.47147 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47693 * 300.00599 * 16 14 12 20 20 C 1.47476 * 110.99983 * 170.00061 * 8 7 6 21 21 N 1.29943 * 107.41963 * 0.35086 * 6 5 4 22 22 O 1.21298 * 110.25290 * 359.77836 * 21 6 5 23 23 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 27 27 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 28 28 H 1.09002 * 109.46802 * 30.23921 * 7 6 5 29 29 H 1.09000 * 109.47575 * 150.23508 * 7 6 5 30 30 H 1.09000 * 113.47386 * 336.06083 * 9 8 7 31 31 H 1.08998 * 113.47659 * 106.52999 * 9 8 7 32 32 H 0.96702 * 114.00094 * 273.84872 * 11 10 9 33 33 H 0.96995 * 119.99722 * 179.97438 * 15 14 12 34 34 H 1.09004 * 113.47415 * 253.46730 * 20 8 7 35 35 H 1.09001 * 113.48017 * 23.93173 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2902 1.1196 -1.0543 6 6 5.5430 1.0246 -0.5743 7 6 6.8058 0.9241 -1.3906 8 7 7.1063 -0.4892 -1.6557 9 6 8.0350 -1.0305 -0.6459 10 6 8.7601 -1.7604 -1.7852 11 8 8.2222 -3.0486 -2.0907 12 6 10.2627 -1.7553 -1.6692 13 1 10.8404 -0.9919 -2.1691 14 6 10.8999 -2.7252 -0.9246 15 7 10.1965 -3.6551 -0.3162 16 14 12.7623 -2.7185 -0.7803 17 1 13.2063 -1.4429 -0.1628 18 1 13.1971 -3.8565 0.0690 19 1 13.3641 -2.8502 -2.1314 20 6 8.1923 -0.6222 -2.6445 21 7 5.4642 1.0306 0.7228 22 8 4.3064 1.1228 1.0726 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 6.6703 1.4502 -2.3355 29 1 7.6316 1.3740 -0.8394 30 1 8.6441 -0.2666 -0.1626 31 1 7.5579 -1.7033 0.0665 32 1 8.5816 -3.7637 -1.5480 33 1 10.6448 -4.3376 0.2073 34 1 7.8484 -0.9490 -3.6259 35 1 8.8433 0.2506 -2.6945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473415006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:57 Heat of formation + Delta-G solvation = 26.085541 kcal Electronic energy + Delta-G solvation = -20374.133914 eV Core-core repulsion = 16991.876472 eV Total energy + Delta-G solvation = -3382.257442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.46276 -39.24062 -38.32148 -35.88134 -34.34770 -32.93120 -32.05205 -29.48738 -28.54379 -26.26072 -26.17505 -24.94738 -23.81213 -22.67734 -20.99245 -18.68724 -18.13223 -17.63517 -17.17289 -16.60605 -16.33074 -15.89337 -15.15511 -15.01026 -14.46291 -14.21358 -13.98061 -13.51282 -13.01341 -12.67703 -12.24810 -12.05665 -11.95317 -11.81889 -11.58243 -11.45659 -11.15646 -10.96238 -10.84696 -10.69906 -10.34226 -10.18668 -10.01899 -9.95043 -9.27430 -8.65682 -8.26642 -7.96134 -6.27543 -4.37959 1.13111 2.28911 2.70910 3.21220 3.26782 3.28862 3.54253 3.86785 4.17617 4.25193 4.63183 4.82955 4.89531 4.96899 5.00607 5.03464 5.09381 5.35785 5.53038 5.58453 5.86857 5.90543 5.98668 6.13824 6.24633 6.33006 6.60096 6.65367 7.01309 7.07609 7.31427 7.75328 7.84075 7.97925 8.31616 8.64086 9.32293 9.67962 10.78746 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035238 B = 0.003821 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.408737 B = 7326.307121 C = 7461.591943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.163 3.837 4 C 0.160 3.840 5 N -0.448 5.448 6 C 0.197 3.803 7 C 0.102 3.898 8 N -0.466 5.466 9 C -0.021 4.021 10 C 0.250 3.750 11 O -0.569 6.569 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.007 3.993 21 N -0.372 5.372 22 O 0.086 5.914 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.391 0.609 33 H 0.273 0.727 34 H 0.077 0.923 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 10.605 1.725 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.299 6.299 3 C 0.084 3.916 4 C -0.061 4.061 5 N -0.183 5.183 6 C -0.076 4.076 7 C -0.028 4.028 8 N -0.189 5.189 9 C -0.150 4.150 10 C 0.208 3.792 11 O -0.382 6.382 12 C -0.575 4.575 13 H 0.086 0.914 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.121 4.121 21 N -0.077 5.077 22 O 0.024 5.976 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.246 0.754 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.299 10.249 1.387 18.467 hybrid contribution 1.567 0.360 0.891 1.839 sum -13.732 10.609 2.278 17.501 Atomic orbital electron populations 1.22841 0.79296 1.03723 1.00443 1.88014 1.20806 1.25522 1.95571 1.20500 0.80481 0.86762 1.03807 1.28164 0.97535 0.99042 0.81382 1.71840 1.00585 1.17284 1.28598 1.25754 0.95078 0.99054 0.87751 1.21003 0.88813 0.95303 0.97658 1.68956 1.31204 1.10502 1.08287 1.24851 0.93193 0.99304 0.97672 1.19317 0.90258 0.81549 0.88069 1.86036 1.69257 1.17891 1.64988 1.21523 0.91251 1.13154 1.31547 0.91440 1.25082 0.99397 0.94730 0.93931 1.69290 1.36207 1.15531 1.32709 0.86421 0.84160 0.77775 0.78304 1.20026 1.20984 1.19882 1.24096 0.91231 0.99166 0.97632 1.74671 0.97006 1.19927 1.16114 1.85286 1.11921 1.64734 1.35612 0.93417 0.93362 0.88824 0.88519 0.89418 0.88464 0.91134 0.91915 0.91362 0.75354 0.91692 0.90504 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.27 10.69 -35.23 -0.38 -4.65 16 3 C 0.16 1.50 6.56 36.01 0.24 1.74 16 4 C 0.16 2.31 8.14 -13.06 -0.11 2.21 16 5 N -0.45 -7.79 11.55 -9.87 -0.11 -7.91 16 6 C 0.20 3.69 7.80 -156.37 -1.22 2.47 16 7 C 0.10 1.90 5.44 -4.98 -0.03 1.87 16 8 N -0.47 -10.37 6.32 -246.11 -1.55 -11.92 16 9 C -0.02 -0.51 7.13 -7.55 -0.05 -0.57 16 10 C 0.25 6.49 1.56 -91.25 -0.14 6.35 16 11 O -0.57 -15.96 13.53 -35.23 -0.48 -16.44 16 12 C -0.54 -14.41 8.69 -34.44 -0.30 -14.71 16 13 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 15 N -0.90 -24.51 11.02 55.43 0.61 -23.90 16 16 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 20 C 0.01 0.16 7.09 -7.56 -0.05 0.11 16 21 N -0.37 -6.96 12.16 30.90 0.38 -6.58 16 22 O 0.09 1.38 11.31 18.11 0.20 1.58 16 23 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 1.59 8.08 -51.93 -0.42 1.17 16 29 H 0.07 1.25 7.30 -51.93 -0.38 0.87 16 30 H 0.06 1.49 7.38 -51.93 -0.38 1.10 16 31 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.39 11.10 6.33 45.56 0.29 11.38 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -32.16 306.33 -6.19 -38.35 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -3.81 Total: 8.79 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.65 Total: 2.59 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.68 Total: -50.32 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.65 Total: -19.50 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.16 -6.19 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473415006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.434 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds