Wall clock time and date at job start Mon Mar 30 2020 01:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46674 * 269.99524 * 3 2 1 5 5 H 1.48505 * 109.47094 * 29.99523 * 3 2 1 6 6 H 1.48500 * 109.47273 * 149.99771 * 3 2 1 7 7 C 1.38813 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00693 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99778 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00057 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46830 * 325.00099 * 10 9 7 12 12 C 1.52999 * 109.47126 * 84.99733 * 10 9 7 13 13 O 1.42905 * 109.46727 * 65.00005 * 12 10 9 14 14 C 1.52997 * 109.46848 * 204.99992 * 10 9 7 15 15 N 1.46499 * 109.47555 * 55.00180 * 14 10 9 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 10 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 C 1.50700 * 109.46869 * 179.72354 * 18 16 15 20 20 N 1.33241 * 125.52584 * 269.68822 * 19 18 16 21 21 C 1.30830 * 109.82844 * 179.85606 * 20 19 18 22 22 N 1.34430 * 108.07674 * 0.40877 * 21 20 19 23 23 H 0.96998 * 126.81705 * 179.78890 * 22 21 20 24 24 N 1.30706 * 125.52779 * 90.00107 * 19 18 16 25 25 H 0.97003 * 119.99543 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99767 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46836 * 184.99975 * 12 10 9 28 28 H 1.08997 * 109.47032 * 305.00345 * 12 10 9 29 29 H 0.96705 * 113.99382 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.47382 * 294.99742 * 14 10 9 31 31 H 1.09002 * 109.47216 * 175.00179 * 14 10 9 32 32 H 0.97000 * 119.99484 * 359.97438 * 15 14 10 33 33 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 34 34 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 35 35 H 1.08001 * 125.95877 * 180.12478 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5644 -3.2067 0.5901 12 6 4.2587 -2.9753 -1.4360 13 8 5.0752 -2.0673 -2.1783 14 6 5.4990 -2.2591 0.6113 15 7 5.3610 -1.6643 1.9430 16 6 6.4587 -1.3864 2.6739 17 8 7.5607 -1.6291 2.2294 18 6 6.3165 -0.7802 4.0463 19 6 7.6824 -0.5760 4.6492 20 7 8.3386 -1.4617 5.3978 21 6 9.4964 -0.9689 5.7559 22 7 9.6006 0.2683 5.2405 23 1 10.3477 0.8787 5.3407 24 7 8.4132 0.5008 4.5274 25 1 -0.4849 0.8401 -0.0004 26 1 3.8646 -0.3622 0.0007 27 1 4.7244 -3.9607 -1.4295 28 1 3.2746 -3.0415 -1.8999 29 1 5.2109 -2.3245 -3.1006 30 1 6.0785 -1.5917 -0.0265 31 1 6.0104 -3.2183 0.6930 32 1 4.4796 -1.4699 2.2983 33 1 5.8065 0.1800 3.9683 34 1 5.7356 -1.4497 4.6807 35 1 10.2371 -1.4672 6.3638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507256260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:30 Heat of formation + Delta-G solvation = 16.544048 kcal Electronic energy + Delta-G solvation = -20270.743709 eV Core-core repulsion = 16920.365268 eV Total energy + Delta-G solvation = -3350.378441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20942 -39.35521 -37.24333 -35.00804 -33.53122 -33.37475 -31.84249 -31.47788 -29.54363 -28.45469 -25.15323 -23.30442 -22.92864 -21.17873 -20.18916 -19.70768 -18.49256 -17.91348 -16.92442 -16.81114 -15.87545 -15.65465 -15.28504 -14.86731 -14.56205 -14.17164 -13.65739 -13.34466 -13.30419 -13.04212 -12.79231 -12.47718 -12.24673 -12.00450 -11.52722 -10.98282 -10.85255 -10.69208 -10.29568 -10.16534 -10.11245 -9.94257 -9.64659 -9.56492 -9.42304 -8.99516 -8.67844 -7.34697 -5.82813 -3.19165 1.49199 2.51092 2.71326 2.89127 3.37333 3.43426 3.46473 3.57145 4.01254 4.51850 4.56288 4.77503 4.82418 5.09257 5.22963 5.37429 5.39820 5.45160 5.46586 5.83676 5.93668 5.94980 6.07465 6.22060 6.28054 6.39624 6.63613 6.81912 6.87351 7.84459 7.90986 7.95243 8.11837 8.36196 8.50293 9.14296 9.86938 10.07109 11.34840 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.004778 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.278773 B = 5858.803776 C = 6669.848223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.075 0.925 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.117 3.883 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.544 6.544 18 C -0.053 4.053 19 C 0.255 3.745 20 N -0.534 5.534 21 C 0.259 3.741 22 N -0.486 5.486 23 H 0.440 0.560 24 N -0.304 5.304 25 H 0.260 0.740 26 H 0.366 0.634 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.366 0.634 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.410 0.590 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -3.393 9.177 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.061 3.939 11 H 0.093 0.907 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.007 4.007 15 N -0.367 5.367 16 C 0.304 3.696 17 O -0.421 6.421 18 C -0.096 4.096 19 C -0.029 4.029 20 N -0.262 5.262 21 C -0.040 4.040 22 N -0.204 5.204 23 H 0.286 0.714 24 N -0.133 5.133 25 H 0.070 0.930 26 H 0.199 0.801 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.211 0.789 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.247 0.753 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 16.831 -3.040 9.135 19.390 hybrid contribution 0.785 1.274 -0.319 1.530 sum 17.616 -1.766 8.816 19.778 Atomic orbital electron populations 1.69704 1.05147 1.25962 1.56984 1.24637 0.95143 0.97209 1.01593 0.86572 0.79139 0.84877 0.78015 1.21090 1.21838 1.20175 1.19052 0.80423 0.94712 1.43843 0.89137 1.42737 1.03869 1.01826 1.89761 1.20575 0.90494 0.90596 0.92240 0.90673 1.22999 0.93821 0.90423 0.94970 1.86525 1.72364 1.52039 1.25956 1.21587 0.98299 0.98343 0.82505 1.45935 1.09299 1.63376 1.18124 1.20076 0.84730 0.78578 0.86253 1.90696 1.25902 1.53192 1.72357 1.19936 0.90364 1.04700 0.94563 1.23336 0.96890 0.87532 0.95121 1.70352 1.05785 1.32023 1.18062 1.26044 0.96385 0.84659 0.96904 1.48077 1.16905 1.15100 1.40303 0.71441 1.78015 0.94209 1.23775 1.17259 0.92988 0.80051 0.95099 0.92760 0.78888 0.90716 0.91686 0.75345 0.86316 0.85850 0.76187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.97 55.49 0.78 -27.48 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.74 -16.49 4.31 -53.43 -0.23 -16.72 16 10 C 0.17 3.11 2.84 -67.93 -0.19 2.91 16 11 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 12 C 0.06 0.98 6.86 37.16 0.25 1.23 16 13 O -0.57 -9.54 12.64 -35.23 -0.45 -9.99 16 14 C 0.12 2.00 5.12 -4.04 -0.02 1.98 16 15 N -0.72 -11.61 5.39 -60.29 -0.32 -11.93 16 16 C 0.52 8.69 7.82 -10.98 -0.09 8.60 16 17 O -0.54 -11.05 16.03 5.55 0.09 -10.96 16 18 C -0.05 -0.72 6.33 -29.03 -0.18 -0.90 16 19 C 0.25 3.78 6.63 -156.86 -1.04 2.74 16 20 N -0.53 -7.32 11.19 -11.98 -0.13 -7.46 16 21 C 0.26 2.41 13.13 -90.66 -1.19 1.22 16 22 N -0.49 -4.73 7.45 29.53 0.22 -4.51 16 23 H 0.44 2.43 8.96 -182.34 -1.63 0.80 16 24 N -0.30 -4.43 12.80 32.42 0.41 -4.02 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.37 8.51 5.66 -40.82 -0.23 8.28 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.37 4.40 9.12 45.56 0.42 4.82 16 30 H 0.07 1.43 7.39 -51.93 -0.38 1.05 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 6.38 8.14 -40.82 -0.33 6.05 16 33 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -38.03 309.37 -7.11 -45.15 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -2.71 Total: 11.20 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: 0.72 Total: -72.12 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.36 Total: -20.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -38.03 -7.11 -45.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507256260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.691 kcal (2) G-P(sol) polarization free energy of solvation -38.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds