Wall clock time and date at job start Mon Mar 30 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46674 * 269.99524 * 3 2 1 5 5 H 1.48505 * 109.47094 * 29.99523 * 3 2 1 6 6 H 1.48500 * 109.47273 * 149.99771 * 3 2 1 7 7 C 1.38813 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00693 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99778 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00057 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46830 * 325.00099 * 10 9 7 12 12 C 1.52999 * 109.47126 * 84.99733 * 10 9 7 13 13 O 1.42905 * 109.46727 * 65.00005 * 12 10 9 14 14 C 1.52997 * 109.46848 * 204.99992 * 10 9 7 15 15 N 1.46499 * 109.47555 * 55.00180 * 14 10 9 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 10 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 C 1.50700 * 109.46869 * 179.72354 * 18 16 15 20 20 N 1.33241 * 125.52584 * 269.68822 * 19 18 16 21 21 C 1.30830 * 109.82844 * 179.85606 * 20 19 18 22 22 N 1.34430 * 108.07674 * 0.40877 * 21 20 19 23 23 H 0.96998 * 126.81705 * 179.78890 * 22 21 20 24 24 N 1.30706 * 125.52779 * 90.00107 * 19 18 16 25 25 H 0.97003 * 119.99543 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99767 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46836 * 184.99975 * 12 10 9 28 28 H 1.08997 * 109.47032 * 305.00345 * 12 10 9 29 29 H 0.96705 * 113.99382 * 180.02562 * 13 12 10 30 30 H 1.08998 * 109.47382 * 294.99742 * 14 10 9 31 31 H 1.09002 * 109.47216 * 175.00179 * 14 10 9 32 32 H 0.97000 * 119.99484 * 359.97438 * 15 14 10 33 33 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 34 34 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 35 35 H 1.08001 * 125.95877 * 180.12478 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5644 -3.2067 0.5901 12 6 4.2587 -2.9753 -1.4360 13 8 5.0752 -2.0673 -2.1783 14 6 5.4990 -2.2591 0.6113 15 7 5.3610 -1.6643 1.9430 16 6 6.4587 -1.3864 2.6739 17 8 7.5607 -1.6291 2.2294 18 6 6.3165 -0.7802 4.0463 19 6 7.6824 -0.5760 4.6492 20 7 8.3386 -1.4617 5.3978 21 6 9.4964 -0.9689 5.7559 22 7 9.6006 0.2683 5.2405 23 1 10.3477 0.8787 5.3407 24 7 8.4132 0.5008 4.5274 25 1 -0.4849 0.8401 -0.0004 26 1 3.8646 -0.3622 0.0007 27 1 4.7244 -3.9607 -1.4295 28 1 3.2746 -3.0415 -1.8999 29 1 5.2109 -2.3245 -3.1006 30 1 6.0785 -1.5917 -0.0265 31 1 6.0104 -3.2183 0.6930 32 1 4.4796 -1.4699 2.2983 33 1 5.8065 0.1800 3.9683 34 1 5.7356 -1.4497 4.6807 35 1 10.2371 -1.4672 6.3638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507256260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:29 Heat of formation + Delta-G solvation = -16.582580 kcal Electronic energy + Delta-G solvation = -20272.180188 eV Core-core repulsion = 16920.365268 eV Total energy + Delta-G solvation = -3351.814920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.07574 -40.68837 -38.69370 -36.44855 -35.21698 -34.33192 -33.38351 -32.68286 -30.95432 -29.77745 -26.46535 -25.24587 -23.75338 -22.28218 -21.69493 -20.90636 -19.82976 -19.25671 -18.28220 -18.13372 -17.28840 -16.79499 -16.39552 -16.26311 -15.82209 -15.68611 -15.04691 -14.86239 -14.61733 -14.36211 -14.32129 -14.16045 -13.33154 -13.12504 -13.02959 -12.76547 -12.60636 -12.31525 -11.86458 -11.75823 -11.29016 -11.09896 -11.05455 -10.95603 -10.74506 -10.61559 -10.04569 -9.30930 -7.98746 -5.30982 0.64955 1.40082 1.44290 1.49024 1.60983 1.71995 1.86086 2.41070 2.50938 3.16827 3.33525 3.47831 3.66914 3.71966 3.87482 3.98227 4.18254 4.40398 4.44433 4.53561 4.56297 4.63159 4.83257 4.98993 5.19197 5.24584 5.32243 5.47776 5.81171 6.24890 6.27856 6.55521 7.03435 7.09680 7.11162 7.21725 7.85875 8.04959 9.22192 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.004778 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.278773 B = 5858.803776 C = 6669.848223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.052 4.052 3 Si 0.942 3.058 4 H -0.293 1.293 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.221 4.221 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.166 3.834 11 H 0.085 0.915 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.128 3.872 15 N -0.712 5.712 16 C 0.520 3.480 17 O -0.582 6.582 18 C -0.050 4.050 19 C 0.235 3.765 20 N -0.573 5.573 21 C 0.275 3.725 22 N -0.475 5.475 23 H 0.458 0.542 24 N -0.344 5.344 25 H 0.256 0.744 26 H 0.363 0.637 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.388 0.612 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.414 0.586 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.909 -3.820 10.146 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.244 4.244 3 Si 0.772 3.228 4 H -0.220 1.220 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.352 4.352 8 H 0.087 0.913 9 N -0.383 5.383 10 C 0.058 3.942 11 H 0.102 0.898 12 C -0.016 4.016 13 O -0.392 6.392 14 C 0.004 3.996 15 N -0.364 5.364 16 C 0.306 3.694 17 O -0.463 6.463 18 C -0.092 4.092 19 C -0.048 4.048 20 N -0.302 5.302 21 C -0.023 4.023 22 N -0.195 5.195 23 H 0.306 0.694 24 N -0.174 5.174 25 H 0.065 0.935 26 H 0.196 0.804 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.236 0.764 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.251 0.749 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 19.102 -3.486 10.103 21.889 hybrid contribution 0.228 1.283 -0.616 1.441 sum 19.330 -2.203 9.487 21.645 Atomic orbital electron populations 1.69848 1.06843 1.26369 1.59969 1.25256 0.95738 1.00355 1.03057 0.85605 0.78711 0.81049 0.77453 1.21970 1.22421 1.17988 1.19032 0.82115 0.93548 1.40484 0.91294 1.42713 1.02409 1.03387 1.89812 1.20827 0.90699 0.88923 0.93777 0.89758 1.22822 0.93476 0.91994 0.93339 1.86470 1.72162 1.52711 1.27809 1.21409 0.97087 0.98604 0.82513 1.45927 1.09539 1.63136 1.17797 1.20586 0.83957 0.77724 0.87124 1.90669 1.27280 1.54893 1.73428 1.19985 0.90853 1.05565 0.92800 1.23528 0.97462 0.88011 0.95801 1.70330 1.07624 1.32955 1.19286 1.27067 0.95865 0.83971 0.95362 1.48003 1.16256 1.15845 1.39403 0.69364 1.77886 0.95982 1.24630 1.18922 0.93495 0.80402 0.91336 0.94577 0.76410 0.92674 0.90211 0.74858 0.85069 0.83493 0.70854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.55 13.97 21.65 0.30 -60.25 16 2 C -0.05 -2.94 5.50 84.86 0.47 -2.48 16 3 Si 0.94 45.34 27.74 68.60 1.90 47.24 16 4 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 7 C -0.22 -11.64 10.41 84.03 0.87 -10.76 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.74 -32.12 4.31 -322.94 -1.39 -33.52 16 10 C 0.17 5.74 2.84 44.99 0.13 5.86 16 11 H 0.08 2.78 8.08 -2.39 -0.02 2.76 16 12 C 0.06 2.00 6.86 71.98 0.49 2.49 16 13 O -0.58 -18.56 12.64 -148.98 -1.88 -20.44 16 14 C 0.13 4.16 5.12 86.38 0.44 4.60 16 15 N -0.71 -22.04 5.39 -463.06 -2.49 -24.54 16 16 C 0.52 16.79 7.82 87.66 0.69 17.48 16 17 O -0.58 -23.25 16.03 -3.04 -0.05 -23.30 16 18 C -0.05 -1.29 6.33 29.10 0.18 -1.10 16 19 C 0.24 6.72 6.63 138.63 0.92 7.64 16 20 N -0.57 -14.68 11.19 -191.81 -2.15 -16.82 16 21 C 0.28 4.33 13.13 180.36 2.37 6.70 16 22 N -0.48 -8.25 7.45 -60.49 -0.45 -8.70 16 23 H 0.46 4.00 8.96 -213.10 -1.91 2.09 16 24 N -0.34 -9.65 12.80 -51.34 -0.66 -10.31 16 25 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.36 16.28 5.66 -92.71 -0.52 15.76 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.39 8.46 9.12 -74.05 -0.68 7.78 16 30 H 0.05 2.04 7.39 -2.39 -0.02 2.02 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.41 12.21 8.14 -92.71 -0.75 11.46 16 33 H 0.13 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.28 0.70 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -83.13 309.37 -3.06 -86.19 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -2.75 Total: 34.02 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: 6.56 Total: 30.43 kcal Atomic # 7 Polarization: -147.30 SS G_CDS: -6.84 Total: -154.14 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.93 Total: -43.74 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Total: -83.13 -3.06 -86.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507256260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.603 kcal (2) G-P(sol) polarization free energy of solvation -83.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds